BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349229
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36001.1 | Symbols: | RING/U-box superfamily protein | chr5... 1254 0.0
AT5G36002.1 | Symbols: | other RNA | chr5:14141898-14143241 RE... 826 0.0
> AT5G36001.1 | Symbols: | RING/U-box superfamily protein | chr5:14141641-14143436
FORWARD LENGTH=1581
Length=1581
Score = 1254 bits (679), Expect = 0.0
Identities = 869/954 (91%), Gaps = 40/954 (4%)
Strand=Plus/Plus
Query 1 ATGACTTTCTCAAAACAATTCCCtcttcttctc--ttt-ttcttcttcttcttcttcCCT 57
||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||| |||
Sbjct 320 ATGACTTTCTCAAAACAATTCCCTCTTCTTCTCTATTTCTTCTTCTTCTTCTACTTTCCT 379
Query 58 CTCCTAAATGCCTCAGAACCAAAACGTTGCTACAGTTCCTCCA-CAGGAGGAAACAACCT 116
||||||||||||||| ||||||||||||||||||||| || || ||||||||||||||
Sbjct 380 CTCCTAAATGCCTCAAAACCAAAACGTTGCTACAGTT-CTTCATGTGGAGGAAACAACCT 438
Query 117 TGACGTTAGGTTCCCTTTCTGGCTACCCCCTGATCAATCTTCTTCCTGTGGCTACCCAGG 176
||||||||| ||||||||||||||| | ||||| |||||||| || |||| |||||||||
Sbjct 439 TGACGTTAGCTTCCCTTTCTGGCTATCTCCTGAGCAATCTTCGTCATGTGACTACCCAGG 498
Query 177 ATTCAACCTCCATTGCACCGATCGTCATAAGACAGCCTTAAAGCTTCCAAACTCCGGATC 236
|||||||||||||| | | | |||||||||||||||||||||| ||| || |
Sbjct 499 ATTCAACCTCCATT-----G-T-G-----AGACAGCCTTAAAGCTTCCAAATTCCAGA-C 545
Query 237 -ATTTCTCGTCCGAGACATAAAATCGCAGCGTATTCGCCTCAGCGACCCTGATAACTGCT 295
||||||||||| ||||||||| ||||||||||||| ||| || ||||| ||||||||||
Sbjct 546 GATTTCTCGTCCAAGACATAAAGTCGCAGCGTATTCACCTTAGAGACCCCGATAACTGCT 605
Query 296 TAGCCAGACGGCTTCTCAGCTTCGACGCTTCAGGGTCTCCTTTTTCTCCTCTTCACCTTG 355
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 606 TAGCCAGACGGCTTCTCAGCTTCGACGCTTCAATGTCTCCTTTTTCTCCTCTTCACCTTG 665
Query 356 TCAACTACACTTTCTTGAGCTGTCCTACCGAAAACGTCAAATCCTCTTCTTTGGAACCCA 415
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 666 TCAACTACACTTTCTTGAGCTGTCATAACGAAAACGTCAAATCCTCTTCTTTGGAACCCA 725
Query 416 TCCATTGCCTTGGTAACTCCACAACCTCCTTCTTAGCCACACCTTCAGATCTCACCGGTT 475
||||||||| | | ||| || || ||||||||||||||||||||||||
Sbjct 726 TCCATTGCC-T--T-ACT----AA--------TT--CCACACCTTCAGATCTCACCGGTT 767
Query 476 CAATGCCGTCCTCTTGTCAAATCTCCAAGACACTACTTCTTCCGGTCTCTTCACCACTCG 535
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 768 CAATGCCGTCCTCTTGTCAAACCTTGAAGACACTACTTCTTCCGGTCTCTTCACCACTCG 827
Query 536 CCGTTGACCTCAACAAACAAGACCTCTGGCTGAAATGGGACTCACCGGATTGCACAGGTT 595
| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 CAGGTGATCTCAACAAACAAGACCTCTGGCTGAAATGGGACTCACCGGATTGCACAGGTT 887
Query 596 GTGTTGATTTTAGTCCGTTATGTGGCTTCATAAACAATACCACCCTCAAAGTCAAATGCT 655
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 888 GTGTTGATTTTAGTCCGTTATGTAGCTTCATAAACAATACCATCCTCAAAGTCAAATGCT 947
Query 656 TCGCATACGTTGATTCCGGAAACCCCTGGTTAATAACGTTAAAGATATTGTGCTTATGCC 715
|| ||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 948 TCACATACGTTGATTCTGGAAACCCTTGGTTAATAACGTTAAAGATATTATGCTTATGCC 1007
Query 716 TATCGGTACCATTCTTCCTAGTGATAACTCCTGCCCTCTGTATCATTTTTATCCCAATCC 775
|||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1008 TATCCGTACCATTCTTCATAGTGATAACTCCTGCCGTCTGTATCATTTTTATCCCAATCC 1067
Query 776 AAAACCAAAAATCCAAGAATGTCCCTTGGCGAAATGATACTCTCTGTCCCATTTGTTTAT 835
|| ||| || |||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1068 --AA-CAACAAGCCAAGAGTGTCCCTTGGCGAAATGACACTCTCTGTCCCATTTGTTTAT 1124
Query 836 CAGAATACACAAGTGAAGAGACCGTTAAGTGCTTACCCGAATGTGAACATTGCTTCCACA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 CAGAATACACAAGTGAAGAGACCGTTAAGTGCTTACCCGAATGTGAACATTGCTTCCACA 1184
Query 896 CCGAATGCATCGACCCGTGGCTCAAGTTGCATAATTCTTGTCCGGTTTGTCGGA 949
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1185 CCGAATGCATCGACCCGTGGCTCAAGTTGCATAACTCTTGTCCGGTTTGTCGGA 1238
> AT5G36002.1 | Symbols: | other RNA | chr5:14141898-14143241
REVERSE LENGTH=1250
Length=1250
Score = 826 bits (447), Expect = 0.0
Identities = 612/685 (89%), Gaps = 37/685 (5%)
Strand=Plus/Minus
Query 1 ATGACTTTCTCAAAACAATTCCCtcttcttctc--ttt-ttcttcttcttcttcttcCCT 57
||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||| |||
Sbjct 1192 ATGACTTTCTCAAAACAATTCCCTCTTCTTCTCTATTTCTTCTTCTTCTTCTACTTTCCT 1133
Query 58 CTCCTAAATGCCTCAGAACCAAAACGTTGCTACAGTTCCTCCA-CAGGAGGAAACAACCT 116
||||||||||||||| ||||||||||||||||||||| || || ||||||||||||||
Sbjct 1132 CTCCTAAATGCCTCAAAACCAAAACGTTGCTACAGTT-CTTCATGTGGAGGAAACAACCT 1074
Query 117 TGACGTTAGGTTCCCTTTCTGGCTACCCCCTGATCAATCTTCTTCCTGTGGCTACCCAGG 176
||||||||| ||||||||||||||| | ||||| |||||||| || |||| |||||||||
Sbjct 1073 TGACGTTAGCTTCCCTTTCTGGCTATCTCCTGAGCAATCTTCGTCATGTGACTACCCAGG 1014
Query 177 ATTCAACCTCCATTGCACCGATCGTCATAAGACAGCCTTAAAGCTTCCAAACTCCGGATC 236
|||||||||||||| | | | |||||||||||||||||||||| ||| || |
Sbjct 1013 ATTCAACCTCCATT-----G-T-G-----AGACAGCCTTAAAGCTTCCAAATTCCAGA-C 967
Query 237 -ATTTCTCGTCCGAGACATAAAATCGCAGCGTATTCGCCTCAGCGACCCTGATAACTGCT 295
||||||||||| ||||||||| ||||||||||||| ||| || ||||| ||||||||||
Sbjct 966 GATTTCTCGTCCAAGACATAAAGTCGCAGCGTATTCACCTTAGAGACCCCGATAACTGCT 907
Query 296 TAGCCAGACGGCTTCTCAGCTTCGACGCTTCAGGGTCTCCTTTTTCTCCTCTTCACCTTG 355
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 906 TAGCCAGACGGCTTCTCAGCTTCGACGCTTCAATGTCTCCTTTTTCTCCTCTTCACCTTG 847
Query 356 TCAACTACACTTTCTTGAGCTGTCCTACCGAAAACGTCAAATCCTCTTCTTTGGAACCCA 415
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 846 TCAACTACACTTTCTTGAGCTGTCATAACGAAAACGTCAAATCCTCTTCTTTGGAACCCA 787
Query 416 TCCATTGCCTTGGTAACTCCACAACCTCCTTCTTAGCCACACCTTCAGATCTCACCGGTT 475
||||||||| | | ||| || || ||||||||||||||||||||||||
Sbjct 786 TCCATTGCC-T--T-ACT----AA--------TT--CCACACCTTCAGATCTCACCGGTT 745
Query 476 CAATGCCGTCCTCTTGTCAAATCTCCAAGACACTACTTCTTCCGGTCTCTTCACCACTCG 535
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 744 CAATGCCGTCCTCTTGTCAAACCTTGAAGACACTACTTCTTCCGGTCTCTTCACCACTCG 685
Query 536 CCGTTGACCTCAACAAACAAGACCTCTGGCTGAAATGGGACTCACCGGATTGCACAGGTT 595
| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 CAGGTGATCTCAACAAACAAGACCTCTGGCTGAAATGGGACTCACCGGATTGCACAGGTT 625
Query 596 GTGTTGATTTTAGTCCGTTATGTGGCTTCATAAACAATACCACCCTCAAAGTCAAATGCT 655
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 624 GTGTTGATTTTAGTCCGTTATGTAGCTTCATAAACAATACCATCCTCAAAGTCAAATGCT 565
Query 656 TCGCATACGTTGATTCCGGAAACCC 680
|| ||||||||||||| || |||||
Sbjct 564 TCACATACGTTGATTCTGGTAACCC 540
Score = 438 bits (237), Expect = 4e-122
Identities = 267/281 (95%), Gaps = 3/281 (1%)
Strand=Plus/Minus
Query 669 TTCCGGAAACCCCTGGTTAATAACGTTAAAGATATTGTGCTTATGCCTATCGGTACCATT 728
||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 426 TTCAGGAAACCCTTGGTTAATAACGTTAAAGATATTATGCTTATGCCTATCCGTACCATT 367
Query 729 CTTCCTAGTGATAACTCCTGCCCTCTGTATCATTTTTATCCCAATCCAAAACCAAAAATC 788
|||| ||||||||||||||||| |||||||||||||||||||||||| || ||| || |
Sbjct 366 CTTCATAGTGATAACTCCTGCCGTCTGTATCATTTTTATCCCAATCC--AA-CAACAAGC 310
Query 789 CAAGAATGTCCCTTGGCGAAATGATACTCTCTGTCCCATTTGTTTATCAGAATACACAAG 848
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 309 CAAGAGTGTCCCTTGGCGAAATGACACTCTCTGTCCCATTTGTTTATCAGAATACACAAG 250
Query 849 TGAAGAGACCGTTAAGTGCTTACCCGAATGTGAACATTGCTTCCACACCGAATGCATCGA 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 TGAAGAGACCGTTAAGTGCTTACCCGAATGTGAACATTGCTTCCACACCGAATGCATCGA 190
Query 909 CCCGTGGCTCAAGTTGCATAATTCTTGTCCGGTTTGTCGGA 949
||||||||||||||||||||| |||||||||||||||||||
Sbjct 189 CCCGTGGCTCAAGTTGCATAACTCTTGTCCGGTTTGTCGGA 149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5