BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349241
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61830.1 | Symbols: ARF18 | auxin response factor 18 | chr3:... 1555 0.0
AT2G46530.3 | Symbols: ARF11 | auxin response factor 11 | chr2:... 869 0.0
> AT3G61830.1 | Symbols: ARF18 | auxin response factor 18 | chr3:22887889-22891435
FORWARD LENGTH=2347
Length=2347
Score = 1555 bits (842), Expect = 0.0
Identities = 899/927 (97%), Gaps = 2/927 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAGTGTTGAAGGTGATGACGATTTCGGAAGTTCTTCGTCAAGGTTTTATCAAGAT 60
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 283 ATGGCGAGTGTTGAAGGTGATGATGATTTCGGAAGTTCTTCGTCAAGGTCTTATCAAGAT 342
Query 61 CAACTATACACAGAGCTATGGAAAGTTTGTGCAGGTCCATTAGTGGAGGTTCCTCGTGCT 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 343 CAACTATACACAGAGCTATGGAAAGTTTGTGCAGGTCCATTAGTGGAAGTTCCTCGTGCT 402
Query 121 GACGAGAAAGTTTTCTACTTCCCTCAGGGTCACATGGAACAACTTGTGGCGTCAACTAAT 180
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 CAAGAGAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACAACTTGTGGCGTCAACTAAT 462
Query 181 CAAGGAATCAAATCAGAAGAAATACCTGTTTTTGATCTTCCTCCAAAGATTCTTTGTCGA 240
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 463 CAAGGAATCAATTCAGAAGAAATACCTGTTTTTGATCTTCCTCCAAAGATACTTTGTCGA 522
Query 241 GTTCTTGGTGTCACTTTAAAGGCGGAGCATGAAACAGATGAAGTTTACGCTCAGATCACA 300
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 523 GTTCTTGATGTCACTTTAAAGGCGGAGCATGAAACAGATGAGGTTTACGCTCAGATCACA 582
Query 301 TTACAGCCAGAGGAAGATCAAAGTGAACCCACAAGTCTTGATCCACCTCTGGTTGAACCA 360
||||| ||||||||||||||||||||||| |||||||||||||||||| | |||| ||||
Sbjct 583 TTACAACCAGAGGAAGATCAAAGTGAACCAACAAGTCTTGATCCACCTATTGTTGGACCA 642
Query 361 ACTAAGCAA-ATGTTTCATTCGTTTGTTAAGATTTTAACGGCTTCAGATACAAGCACTCA 419
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 ACTAAGCAAGA-GTTTCATTCGTTTGTTAAGATTTTAACGGCTTCAGATACAAGCACTCA 701
Query 420 TGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGAATGCTTGCCTGCTTTGGATATGAC 479
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 702 TGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGAATGCTTGCCTTCTTTGGATATGAC 761
Query 480 ACAAGCGACTCCTACTCAAGAACTTGTGACTAGAGATCTTCATGGGTTTGAATGGAGGTT 539
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 762 ACAAGCTACTCCTACTCAAGAACTTGTGACTAGAGATCTTCATGGCTTTGAATGGAGGTT 821
Query 540 TAAGCATATATTCAGAGGGCAACCACGGAGGCATTTGCTTACAACGGGTTGGAGTACATT 599
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 822 TAAGCATATATTCAGAGGACAACCACGGAGGCATTTGCTTACTACGGGTTGGAGTACATT 881
Query 600 TGTATCCTCGAAAAGACTTGTAGCTGGAGATGCTTTTGTGTTCTTGAGGGGCGAGAATGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 882 TGTATCCTCGAAAAGACTTGTAGCTGGAGATGCTTTTGTGTTCTTGAGGGGTGAGAATGG 941
Query 660 GGATTTACGGGTTGGAGTGAGGCGATTAGCTCGGCATCAAAGCACGATGCCTACTTCGGT 719
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 942 GGATTTACGGGTTGGAGTGAGACGATTAGCTCGGCATCAAAGCACAATGCCTACTTCGGT 1001
Query 720 TATCTCGAGTCAGAGCATGCATTTGGGAGTTCTTGCTACAGCTTCTCATGCTGTGCGTAC 779
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TATTTCAAGTCAGAGCATGCATTTGGGAGTTCTTGCTACAGCTTCTCATGCTGTGCGTAC 1061
Query 780 AACAACAATCTTTGTTGTGTTTTACAAGCCTAGGATAAGCCAATTCATAGTTGGGGTGAA 839
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 AACAACAATCTTTGTTGTCTTTTACAAGCCTAGGATAAGCCAATTCATAGTTGGGGTGAA 1121
Query 840 CAAGTATATGGAAGCTATAAAGCATGGATTTTCTCTCGGTACCCGATTCAGAATGAGGTT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 CAAGTATATGGAAGCTATAAAGCATGGATTTTCTCTCGGTACCCGATTCAGAATGAGGTT 1181
Query 900 TGAAGGAGAAGAGTCTCCTGAGAGAAT 926
|||||||||||||||||||||||||||
Sbjct 1182 TGAAGGAGAAGAGTCTCCTGAGAGAAT 1208
Score = 1391 bits (753), Expect = 0.0
Identities = 831/867 (96%), Gaps = 11/867 (1%)
Strand=Plus/Plus
Query 960 ATTTACGGGTACAATTGTGGGAACCGGAGATCTATCTTCACAATGGCCAGCTTCTAAATG 1019
|||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1209 ATTTACTGGTACGATTGTGGGAAGTGGAGATCTATCTTCACAATGGCCAGCTTCTAAATG 1268
Query 1020 GAGGTCATTGCAGGTCCAATGGGATGAGCCAACAACAGTTCAGAGACCAGACAAAGTCTC 1079
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1269 GAGGTCATTGCAGGTACAATGGGATGAGCCAACAACAGTTCAGAGACCAGATAAAGTCTC 1328
Query 1080 ACCATGGGAGATTGAGCCTTTCTTGGCAACTTCCCCAATTTCAACCCCTGCTCAACAACC 1139
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1329 ACCATGGGAGATAGAGCCTTTCTTGGCAACTTCCCCAATTTCAACTCCTGCTCAACAACC 1388
Query 1140 ACAATCGAAATGCAAGCGGTCAAGACCCATCGAGCCATCAGTTATAACACCAGCCCCACC 1199
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1389 ACAATCGAAATGCAAGCGGTCAAGACCCATCGAGCCATCAGTTAAAACACCAGCCCCACC 1448
Query 1200 TAGTTTCTTGTACAGCCTCCCTCAGAGCCAAGATTCCATCAATGCATCCCTTAAACTGTT 1259
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1449 TAGTTTCTTGTACAGCCTCCCTCAGAGCCAAGATTCCATTAATGCATCCCTTAAACTGTT 1508
Query 1260 CCAAGATCCATCACTTGAGAGAAATTCAGGTGGATACTCCTCAAACAACAGCTTCAAACC 1319
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1509 TCAAGATCCATCACTTGAGAGAATTTCAGGTGGATACTCCTCAAACAACAGCTTCAAACC 1568
Query 1320 CGAGActcctcctcctcctcctcGTCCAACGAATTGTAGCTATAGGTTATTTGGATTTGA 1379
||||| |||||||| | | |||||||||||||||||||||||| |||||||||||
Sbjct 1569 CGAGA------CTCCTCCT-C-C-TCCAACGAATTGTAGCTATAGGTTGTTTGGATTTGA 1619
Query 1380 TCTCACAAGCAATCCTCCTGCTCCAATCCCTCAAGACAAGCAACCGATGGATACTTGTGG 1439
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TCTCACAAGCAATTCTCCTGCTCCAATCCCTCAAGACAAGCAACCGATGGATACTTGTGG 1679
Query 1440 AGCTGCCAAGTGTCAAGAACCCATCACTCCAACCTCAATGAATGAGCAGAAGAAGCAACA 1499
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1680 AGCTGCCAAGTGTCAAGAACCCATCACTCCAACCTCAATGAGTGAGCAGAAGAAGCAACA 1739
Query 1500 AACATCAAGAAGTCGAACTAAAGTGCAAATGCAAGGCATTGCTGTTGGTCGTGCGGTTGA 1559
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1740 AACATCAAGAAGTCGAACTAAAGTGCAAATGCAAGGCATTGCGGTTGGTCGTGCGGTTGA 1799
Query 1560 TTTAACACTGTTGAAATCATACGATGAACTGATTGAGGAGCTTGAGGAGATGTTTGAGAT 1619
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1800 TTTAACACTGTTGAAATCTTACGATGAACTGATTGATGAGCTTGAGGAGATGTTTGAGAT 1859
Query 1620 TCAAGGACAGCTTCGT-CCTCGAGACAAATGGATCGTTGTCTTCACAGATGATGAAGGAG 1678
|||||||||||||| | || |||||||||||||||||||||||||| |||||||||||||
Sbjct 1860 TCAAGGACAGCTTCTTGCC-CGAGACAAATGGATCGTTGTCTTCACTGATGATGAAGGAG 1918
Query 1679 ATATGATGCTTGCTGGAGATGATCCATGGAATGAGTTTTGCAAGATGGCTAAGAAGATAT 1738
|||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1919 ATATGATGCTTGCTGGTGATGATCCGTGGAATGAGTTTTGCAAGATGGCAAAGAAGATAT 1978
Query 1739 TTATATATTCGAGCGATGAGGTTAAGAAAATGACAACGAAATTGAAGATTTCTTCGTCGT 1798
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1979 TTATATATTCGAGCGATGAGGTTAAGAAAATGACAACGAAACTGAAGATTTCTTCGTCGT 2038
Query 1799 TAGAGAATGAAGAATATGGTAATGAAT 1825
|||||||||| ||||||||||||||||
Sbjct 2039 TAGAGAATGAGGAATATGGTAATGAAT 2065
> AT2G46530.3 | Symbols: ARF11 | auxin response factor 11 | chr2:19105112-19108331
FORWARD LENGTH=2171
Length=2171
Score = 869 bits (470), Expect = 0.0
Identities = 742/872 (85%), Gaps = 24/872 (3%)
Strand=Plus/Plus
Query 67 TACACAGAGCTATGGAAAGTTTGTGCAGGTCCA-TTAGTGGAGGTTCCTCGTGCTGACGA 125
||||| ||||||||||||| ||||||||| ||| || ||||| ||||||||| || ||
Sbjct 118 TACACGGAGCTATGGAAAGCTTGTGCAGGGCCACTT-GTGGAAGTTCCTCGTTATGGTGA 176
Query 126 GAA-AGTTTTCTACTTCCCTCAGGGTCACATGGAACAACTT-GTGGCGTCAACTAATCAA 183
|| |||||||||||||||||| ||||||||||||||| || || || || |||||||||
Sbjct 177 -AAGAGTTTTCTACTTCCCTCAAGGTCACATGGAACAA-TTGGTTGCTTCGACTAATCAA 234
Query 184 GGA-AT-CAAATCAGAAGAAATACCTGTTTTTGATCTTCCTCCAAAGATTCTTTGTCGAG 241
||| | ||| |||| ||||| || ||| |||||||||||||||| |||||||| |
Sbjct 235 GGAGTTGTTGATC--AAGAGATACCAGTGTTTAATCTTCCTCCAAAGATACTTTGTCGTG 292
Query 242 TTCTTGGTGTCACTTTAAAGGCGGAGCATGAAACAGATGAAGTTTACGCTCAGATCACAT 301
||||| |||| || ||||| || || ||||| || ||||| |||||||||||||||||||
Sbjct 293 TTCTTAGTGTTACGTTAAAAGCAGAACATGAGACCGATGAGGTTTACGCTCAGATCACAT 352
Query 302 TACAGCCAGAGGAAGATCAAAGTGAACCCACAAGTCTTGATCCACCTCTGGTTGAACCAA 361
|||| ||||| ||||||||||||||||| ||||||||||| |||||| | || ||||||
Sbjct 353 TACAACCAGAAGAAGATCAAAGTGAACCAACAAGTCTTGACCCACCTTTAGTAGAACCAG 412
Query 362 CTAAGCAAATGTTTCATTCGTTTGTTAAGATTTTAACGGCTTCAGATACAAGCACTCATG 421
|||| | || | || |||| ||||| |||||| |||| ||||||||||||||||| ||||
Sbjct 413 CTAAACCAACGGTTGATTCTTTTGTGAAGATTCTAACAGCTTCAGATACAAGCACACATG 472
Query 422 GTGGATTCTCTGTTCTTCGTAAACACGCCACTGAATGCTTGCCTGCT-TTGGATATGACA 480
|||||||||||||||||||||||||||||||||| || || ||| | ||| ||||||||
Sbjct 473 GTGGATTCTCTGTTCTTCGTAAACACGCCACTGAGTGTTTACCTTCACTTG-ATATGACA 531
Query 481 CAAGCGACTCCTACTCAAGAACTTGT-GACTAGAGATCTTCATGGGTTTGAATGGAGGTT 539
||| | || || |||||||||||||| | ||||||||||||| || | ||||||||||||
Sbjct 532 CAACCTACACCGACTCAAGAACTTGTAG-CTAGAGATCTTCACGGCTATGAATGGAGGTT 590
Query 540 TAAGCATATATTCAGAGGGCAACC-ACGGAGGCATTTGCTTACAACGGGTTGGAGTACAT 598
|||||||||||| ||||||||||| | |||||||||| |||||||| |||||||||||||
Sbjct 591 TAAGCATATATTTAGAGGGCAACCGA-GGAGGCATTTACTTACAACCGGTTGGAGTACAT 649
Query 599 TTGTATCCTCGAAAAGACTTGTAGCTGGAGATGCTTTTGTGTTCTTGAGGGGCGAGAAT- 657
||||| |||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 650 TTGTAACCTCGAAAAGACTTGTAGCTGGAGATGCATTTGTGTTCTTGAGGGGTGA-AACC 708
Query 658 GGGGATTTACGGGTTGGAGTGAGGCGATTAGCTCGGCATCAAAGCACGATGCCTACTTCG 717
||||||||||||||||| |||||||| |||||| ||| |||||||||||||| | ||
Sbjct 709 GGGGATTTACGGGTTGGTGTGAGGCGTTTAGCTAAGCAGCAAAGCACGATGCCCGCATCC 768
Query 718 GTTATCTCGAGTCAGAGCATGCATTTGGGAGTTCTTGCTACAGCTTCTCATGCTGTG-CG 776
||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |
Sbjct 769 GTTATTTCGAGTCAGAGTATGCGTTTGGGAGTTCTTGCTACAGCTTCTCATGCTGTTACC 828
Query 777 TACAACAACAATCTTTGTTGTGTTTTACAAGCCTAGGATAAGCCAATTCATAGTTGGGGT 836
|||||||| || |||||||| || || || || ||||||||||| || ||| || | ||
Sbjct 829 -ACAACAACTATATTTGTTGTCTTCTATAAACCAAGGATAAGCCAGTTTATAATTAGTGT 887
Query 837 GAACAAGTATATGGAAG-CTATAAAGCATGGATTTTCTCTCGGTACCCGAT-TCAGAATG 894
||||||||||||| | | | || ||| | || ||||||||||||| || | | || |||
Sbjct 888 GAACAAGTATATG-ATGGCGATGAAGAACGGGTTTTCTCTCGGTATGCGGTAT-AGGATG 945
Query 895 AGGTTTGAAGGAGAAGAGTCTCCTGAGAGAAT 926
|| || ||||||||||||||||||||||||||
Sbjct 946 AGATTCGAAGGAGAAGAGTCTCCTGAGAGAAT 977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90411181545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5