BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg349241 Length=1827 Score E Sequences producing significant alignments: (Bits) Value AT3G61830.1 | Symbols: ARF18 | auxin response factor 18 | chr3:... 1555 0.0 AT2G46530.3 | Symbols: ARF11 | auxin response factor 11 | chr2:... 869 0.0 > AT3G61830.1 | Symbols: ARF18 | auxin response factor 18 | chr3:22887889-22891435 FORWARD LENGTH=2347 Length=2347 Score = 1555 bits (842), Expect = 0.0 Identities = 899/927 (97%), Gaps = 2/927 (0%) Strand=Plus/Plus Query 1 ATGGCGAGTGTTGAAGGTGATGACGATTTCGGAAGTTCTTCGTCAAGGTTTTATCAAGAT 60 ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 283 ATGGCGAGTGTTGAAGGTGATGATGATTTCGGAAGTTCTTCGTCAAGGTCTTATCAAGAT 342 Query 61 CAACTATACACAGAGCTATGGAAAGTTTGTGCAGGTCCATTAGTGGAGGTTCCTCGTGCT 120 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 343 CAACTATACACAGAGCTATGGAAAGTTTGTGCAGGTCCATTAGTGGAAGTTCCTCGTGCT 402 Query 121 GACGAGAAAGTTTTCTACTTCCCTCAGGGTCACATGGAACAACTTGTGGCGTCAACTAAT 180 | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 403 CAAGAGAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACAACTTGTGGCGTCAACTAAT 462 Query 181 CAAGGAATCAAATCAGAAGAAATACCTGTTTTTGATCTTCCTCCAAAGATTCTTTGTCGA 240 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 463 CAAGGAATCAATTCAGAAGAAATACCTGTTTTTGATCTTCCTCCAAAGATACTTTGTCGA 522 Query 241 GTTCTTGGTGTCACTTTAAAGGCGGAGCATGAAACAGATGAAGTTTACGCTCAGATCACA 300 ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 523 GTTCTTGATGTCACTTTAAAGGCGGAGCATGAAACAGATGAGGTTTACGCTCAGATCACA 582 Query 301 TTACAGCCAGAGGAAGATCAAAGTGAACCCACAAGTCTTGATCCACCTCTGGTTGAACCA 360 ||||| ||||||||||||||||||||||| |||||||||||||||||| | |||| |||| Sbjct 583 TTACAACCAGAGGAAGATCAAAGTGAACCAACAAGTCTTGATCCACCTATTGTTGGACCA 642 Query 361 ACTAAGCAA-ATGTTTCATTCGTTTGTTAAGATTTTAACGGCTTCAGATACAAGCACTCA 419 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 643 ACTAAGCAAGA-GTTTCATTCGTTTGTTAAGATTTTAACGGCTTCAGATACAAGCACTCA 701 Query 420 TGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGAATGCTTGCCTGCTTTGGATATGAC 479 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 702 TGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGAATGCTTGCCTTCTTTGGATATGAC 761 Query 480 ACAAGCGACTCCTACTCAAGAACTTGTGACTAGAGATCTTCATGGGTTTGAATGGAGGTT 539 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 762 ACAAGCTACTCCTACTCAAGAACTTGTGACTAGAGATCTTCATGGCTTTGAATGGAGGTT 821 Query 540 TAAGCATATATTCAGAGGGCAACCACGGAGGCATTTGCTTACAACGGGTTGGAGTACATT 599 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 822 TAAGCATATATTCAGAGGACAACCACGGAGGCATTTGCTTACTACGGGTTGGAGTACATT 881 Query 600 TGTATCCTCGAAAAGACTTGTAGCTGGAGATGCTTTTGTGTTCTTGAGGGGCGAGAATGG 659 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 882 TGTATCCTCGAAAAGACTTGTAGCTGGAGATGCTTTTGTGTTCTTGAGGGGTGAGAATGG 941 Query 660 GGATTTACGGGTTGGAGTGAGGCGATTAGCTCGGCATCAAAGCACGATGCCTACTTCGGT 719 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 942 GGATTTACGGGTTGGAGTGAGACGATTAGCTCGGCATCAAAGCACAATGCCTACTTCGGT 1001 Query 720 TATCTCGAGTCAGAGCATGCATTTGGGAGTTCTTGCTACAGCTTCTCATGCTGTGCGTAC 779 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1002 TATTTCAAGTCAGAGCATGCATTTGGGAGTTCTTGCTACAGCTTCTCATGCTGTGCGTAC 1061 Query 780 AACAACAATCTTTGTTGTGTTTTACAAGCCTAGGATAAGCCAATTCATAGTTGGGGTGAA 839 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1062 AACAACAATCTTTGTTGTCTTTTACAAGCCTAGGATAAGCCAATTCATAGTTGGGGTGAA 1121 Query 840 CAAGTATATGGAAGCTATAAAGCATGGATTTTCTCTCGGTACCCGATTCAGAATGAGGTT 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1122 CAAGTATATGGAAGCTATAAAGCATGGATTTTCTCTCGGTACCCGATTCAGAATGAGGTT 1181 Query 900 TGAAGGAGAAGAGTCTCCTGAGAGAAT 926 ||||||||||||||||||||||||||| Sbjct 1182 TGAAGGAGAAGAGTCTCCTGAGAGAAT 1208 Score = 1391 bits (753), Expect = 0.0 Identities = 831/867 (96%), Gaps = 11/867 (1%) Strand=Plus/Plus Query 960 ATTTACGGGTACAATTGTGGGAACCGGAGATCTATCTTCACAATGGCCAGCTTCTAAATG 1019 |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1209 ATTTACTGGTACGATTGTGGGAAGTGGAGATCTATCTTCACAATGGCCAGCTTCTAAATG 1268 Query 1020 GAGGTCATTGCAGGTCCAATGGGATGAGCCAACAACAGTTCAGAGACCAGACAAAGTCTC 1079 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1269 GAGGTCATTGCAGGTACAATGGGATGAGCCAACAACAGTTCAGAGACCAGATAAAGTCTC 1328 Query 1080 ACCATGGGAGATTGAGCCTTTCTTGGCAACTTCCCCAATTTCAACCCCTGCTCAACAACC 1139 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1329 ACCATGGGAGATAGAGCCTTTCTTGGCAACTTCCCCAATTTCAACTCCTGCTCAACAACC 1388 Query 1140 ACAATCGAAATGCAAGCGGTCAAGACCCATCGAGCCATCAGTTATAACACCAGCCCCACC 1199 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1389 ACAATCGAAATGCAAGCGGTCAAGACCCATCGAGCCATCAGTTAAAACACCAGCCCCACC 1448 Query 1200 TAGTTTCTTGTACAGCCTCCCTCAGAGCCAAGATTCCATCAATGCATCCCTTAAACTGTT 1259 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1449 TAGTTTCTTGTACAGCCTCCCTCAGAGCCAAGATTCCATTAATGCATCCCTTAAACTGTT 1508 Query 1260 CCAAGATCCATCACTTGAGAGAAATTCAGGTGGATACTCCTCAAACAACAGCTTCAAACC 1319 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1509 TCAAGATCCATCACTTGAGAGAATTTCAGGTGGATACTCCTCAAACAACAGCTTCAAACC 1568 Query 1320 CGAGActcctcctcctcctcctcGTCCAACGAATTGTAGCTATAGGTTATTTGGATTTGA 1379 ||||| |||||||| | | |||||||||||||||||||||||| ||||||||||| Sbjct 1569 CGAGA------CTCCTCCT-C-C-TCCAACGAATTGTAGCTATAGGTTGTTTGGATTTGA 1619 Query 1380 TCTCACAAGCAATCCTCCTGCTCCAATCCCTCAAGACAAGCAACCGATGGATACTTGTGG 1439 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1620 TCTCACAAGCAATTCTCCTGCTCCAATCCCTCAAGACAAGCAACCGATGGATACTTGTGG 1679 Query 1440 AGCTGCCAAGTGTCAAGAACCCATCACTCCAACCTCAATGAATGAGCAGAAGAAGCAACA 1499 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1680 AGCTGCCAAGTGTCAAGAACCCATCACTCCAACCTCAATGAGTGAGCAGAAGAAGCAACA 1739 Query 1500 AACATCAAGAAGTCGAACTAAAGTGCAAATGCAAGGCATTGCTGTTGGTCGTGCGGTTGA 1559 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1740 AACATCAAGAAGTCGAACTAAAGTGCAAATGCAAGGCATTGCGGTTGGTCGTGCGGTTGA 1799 Query 1560 TTTAACACTGTTGAAATCATACGATGAACTGATTGAGGAGCTTGAGGAGATGTTTGAGAT 1619 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 1800 TTTAACACTGTTGAAATCTTACGATGAACTGATTGATGAGCTTGAGGAGATGTTTGAGAT 1859 Query 1620 TCAAGGACAGCTTCGT-CCTCGAGACAAATGGATCGTTGTCTTCACAGATGATGAAGGAG 1678 |||||||||||||| | || |||||||||||||||||||||||||| ||||||||||||| Sbjct 1860 TCAAGGACAGCTTCTTGCC-CGAGACAAATGGATCGTTGTCTTCACTGATGATGAAGGAG 1918 Query 1679 ATATGATGCTTGCTGGAGATGATCCATGGAATGAGTTTTGCAAGATGGCTAAGAAGATAT 1738 |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1919 ATATGATGCTTGCTGGTGATGATCCGTGGAATGAGTTTTGCAAGATGGCAAAGAAGATAT 1978 Query 1739 TTATATATTCGAGCGATGAGGTTAAGAAAATGACAACGAAATTGAAGATTTCTTCGTCGT 1798 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1979 TTATATATTCGAGCGATGAGGTTAAGAAAATGACAACGAAACTGAAGATTTCTTCGTCGT 2038 Query 1799 TAGAGAATGAAGAATATGGTAATGAAT 1825 |||||||||| |||||||||||||||| Sbjct 2039 TAGAGAATGAGGAATATGGTAATGAAT 2065 > AT2G46530.3 | Symbols: ARF11 | auxin response factor 11 | chr2:19105112-19108331 FORWARD LENGTH=2171 Length=2171 Score = 869 bits (470), Expect = 0.0 Identities = 742/872 (85%), Gaps = 24/872 (3%) Strand=Plus/Plus Query 67 TACACAGAGCTATGGAAAGTTTGTGCAGGTCCA-TTAGTGGAGGTTCCTCGTGCTGACGA 125 ||||| ||||||||||||| ||||||||| ||| || ||||| ||||||||| || || Sbjct 118 TACACGGAGCTATGGAAAGCTTGTGCAGGGCCACTT-GTGGAAGTTCCTCGTTATGGTGA 176 Query 126 GAA-AGTTTTCTACTTCCCTCAGGGTCACATGGAACAACTT-GTGGCGTCAACTAATCAA 183 || |||||||||||||||||| ||||||||||||||| || || || || ||||||||| Sbjct 177 -AAGAGTTTTCTACTTCCCTCAAGGTCACATGGAACAA-TTGGTTGCTTCGACTAATCAA 234 Query 184 GGA-AT-CAAATCAGAAGAAATACCTGTTTTTGATCTTCCTCCAAAGATTCTTTGTCGAG 241 ||| | ||| |||| ||||| || ||| |||||||||||||||| |||||||| | Sbjct 235 GGAGTTGTTGATC--AAGAGATACCAGTGTTTAATCTTCCTCCAAAGATACTTTGTCGTG 292 Query 242 TTCTTGGTGTCACTTTAAAGGCGGAGCATGAAACAGATGAAGTTTACGCTCAGATCACAT 301 ||||| |||| || ||||| || || ||||| || ||||| ||||||||||||||||||| Sbjct 293 TTCTTAGTGTTACGTTAAAAGCAGAACATGAGACCGATGAGGTTTACGCTCAGATCACAT 352 Query 302 TACAGCCAGAGGAAGATCAAAGTGAACCCACAAGTCTTGATCCACCTCTGGTTGAACCAA 361 |||| ||||| ||||||||||||||||| ||||||||||| |||||| | || |||||| Sbjct 353 TACAACCAGAAGAAGATCAAAGTGAACCAACAAGTCTTGACCCACCTTTAGTAGAACCAG 412 Query 362 CTAAGCAAATGTTTCATTCGTTTGTTAAGATTTTAACGGCTTCAGATACAAGCACTCATG 421 |||| | || | || |||| ||||| |||||| |||| ||||||||||||||||| |||| Sbjct 413 CTAAACCAACGGTTGATTCTTTTGTGAAGATTCTAACAGCTTCAGATACAAGCACACATG 472 Query 422 GTGGATTCTCTGTTCTTCGTAAACACGCCACTGAATGCTTGCCTGCT-TTGGATATGACA 480 |||||||||||||||||||||||||||||||||| || || ||| | ||| |||||||| Sbjct 473 GTGGATTCTCTGTTCTTCGTAAACACGCCACTGAGTGTTTACCTTCACTTG-ATATGACA 531 Query 481 CAAGCGACTCCTACTCAAGAACTTGT-GACTAGAGATCTTCATGGGTTTGAATGGAGGTT 539 ||| | || || |||||||||||||| | ||||||||||||| || | |||||||||||| Sbjct 532 CAACCTACACCGACTCAAGAACTTGTAG-CTAGAGATCTTCACGGCTATGAATGGAGGTT 590 Query 540 TAAGCATATATTCAGAGGGCAACC-ACGGAGGCATTTGCTTACAACGGGTTGGAGTACAT 598 |||||||||||| ||||||||||| | |||||||||| |||||||| ||||||||||||| Sbjct 591 TAAGCATATATTTAGAGGGCAACCGA-GGAGGCATTTACTTACAACCGGTTGGAGTACAT 649 Query 599 TTGTATCCTCGAAAAGACTTGTAGCTGGAGATGCTTTTGTGTTCTTGAGGGGCGAGAAT- 657 ||||| |||||||||||||||||||||||||||| ||||||||||||||||| || || Sbjct 650 TTGTAACCTCGAAAAGACTTGTAGCTGGAGATGCATTTGTGTTCTTGAGGGGTGA-AACC 708 Query 658 GGGGATTTACGGGTTGGAGTGAGGCGATTAGCTCGGCATCAAAGCACGATGCCTACTTCG 717 ||||||||||||||||| |||||||| |||||| ||| |||||||||||||| | || Sbjct 709 GGGGATTTACGGGTTGGTGTGAGGCGTTTAGCTAAGCAGCAAAGCACGATGCCCGCATCC 768 Query 718 GTTATCTCGAGTCAGAGCATGCATTTGGGAGTTCTTGCTACAGCTTCTCATGCTGTG-CG 776 ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| | Sbjct 769 GTTATTTCGAGTCAGAGTATGCGTTTGGGAGTTCTTGCTACAGCTTCTCATGCTGTTACC 828 Query 777 TACAACAACAATCTTTGTTGTGTTTTACAAGCCTAGGATAAGCCAATTCATAGTTGGGGT 836 |||||||| || |||||||| || || || || ||||||||||| || ||| || | || Sbjct 829 -ACAACAACTATATTTGTTGTCTTCTATAAACCAAGGATAAGCCAGTTTATAATTAGTGT 887 Query 837 GAACAAGTATATGGAAG-CTATAAAGCATGGATTTTCTCTCGGTACCCGAT-TCAGAATG 894 ||||||||||||| | | | || ||| | || ||||||||||||| || | | || ||| Sbjct 888 GAACAAGTATATG-ATGGCGATGAAGAACGGGTTTTCTCTCGGTATGCGGTAT-AGGATG 945 Query 895 AGGTTTGAAGGAGAAGAGTCTCCTGAGAGAAT 926 || || |||||||||||||||||||||||||| Sbjct 946 AGATTCGAAGGAGAAGAGTCTCCTGAGAGAAT 977 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90411181545 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5