BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg349267 Length=741 Score E Sequences producing significant alignments: (Bits) Value AT3G62070.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 830 0.0 AT2G46940.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 95.3 7e-19 > AT3G62070.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46940.1); Has 137 Blast hits to 135 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22983138-22984513 REVERSE LENGTH=1290 Length=1290 Score = 830 bits (449), Expect = 0.0 Identities = 570/624 (91%), Gaps = 26/624 (4%) Strand=Plus/Plus Query 1 ATGGCGTTGGACGAGAGCTTAGTGATGGTTTCTTCTTTGTCGAGATTGTCTATATGTACG 60 |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 32 ATGGCGTTCGAAGAGAGCTTAGTAATGGTTTCTTCTTTGTCGAGATTGTCTATATGTACG 91 Query 61 AGCTCTGCTTACGTCACCGAAGACGAAGCAGCCACGAAGAATCATCTAGATTCGTGTGTT 120 |||||||| | | | | ||||||||||||||||||||||| | ||||||||||||| Sbjct 92 AGCTCTGC-T---T-A-C---GACGAAGCAGCCACGAAGAATCAACCAGATTCGTGTGTT 142 Query 121 TTCACGTCTCTGGAGAATTTCGACGGAGCAGAGGCGGATGGAGAAGTTTCCGATGATGGA 180 | ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 143 TCCACATCTCTGGAGAATTTCGACGGAGCAGAGGCGGATGGGGAAGTTTCCGATGATGGA 202 Query 181 GAAGGAAAAGAGAACGTTCGAGAGTCTGATTCCGACAAAGAGACACGTGGGTTTTACTCT 240 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 203 GAAGGAAAAGAGAACGTTCGAGAGTCAGATTCCGACAAAGAGACACGTGGGTTTTACTCT 262 Query 241 CTTCCGGTGACTCCATCTCGCCGGAGAAGAAAACTTACAGTTTCAGGCGAGTTAGATGCG 300 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 263 CTTCCGGTGACTCCATCTCGCCGGAGAAGAAAACTTACAGTTTCCGGCGAGTTAGATGCG 322 Query 301 AATGAGAGTAACAGAGACGGCGGTAAGTGTAGTTTACGGAGGCAAAAAAGGTTAGTAAGG 360 ||||||||||||| | | ||| |||||||||||||||||||||||| || || || Sbjct 323 AATGAGAGTAACAAAAATGGCAGTAAGTGTAGTTTACGGAGGCAAA---GG--AG---GG 374 Query 361 GAAAAGAAGAAAAAGAGAGTTAACGGAGAAAGTGACGGCGGTGGAAGAGAAGGATTAACG 420 |||||||||||||| ||||||||||||| |||||| ||||||||||||||| |||||| Sbjct 375 -AAAAGAAGAAAAAGGGAGTTAACGGAGAGTGTGACGTCGGTGGAAGAGAAGGCTTAACG 433 Query 421 GTGTTAACGAGAGCGAA-AGGTGGAGAGAAGTCGTTGAGGATGGGGTTAGAAGAAGTGAA 479 ||||| |||||||| || ||||||||| | ||||||||||||||||||| |||||||||| Sbjct 434 GTGTTGACGAGAGC-AAGAGGTGGAGATAGGTCGTTGAGGATGGGGTTACAAGAAGTGAA 492 Query 480 AGCTTGTAGAGATCTCGGGTTCGAATTAGAGGTTCCGGTTCCGGGTCCGGGTCGGATCTC 539 ||||||||||||||||||||||||||||||||||||||||||||||| || | |||| Sbjct 493 AGCTTGTAGAGATCTCGGGTTCGAATTAGAGGTTCCGGTTCCGGGTC-GGAT---ATCT- 547 Query 540 TGTGTCAACAACCGGGTCGAATTTCGATACTCAGACTAGTAGTGGCGGCAACTCACCCAT 599 ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 548 -GTGTCAACAACCGGGTCGAATTTCGATACTCAGACTAGTAGCGGCGGCGACTCACCCAT 606 Query 600 CGCCACTTGGCGCATCTCCAGTCC 623 |||||| ||||| ||||||||||| Sbjct 607 CGCCACCTGGCGTATCTCCAGTCC 630 Score = 137 bits (74), Expect = 1e-31 Identities = 82/86 (95%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 655 GGTGATGATCCAAAGGAGGTTAAGGCGAGGCTGAAGGTGTGGGCACAAGCAGTAGCTTTA 714 |||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||| Sbjct 632 GGTGATGATCCAAAGGAGGTCAAGGCGAGGTTGAAAGTGTGGGCACAAGCGGTAGCTTTA 691 Query 715 GCTTCTGCGACACGTCAAGCTTCTTA 740 |||||||||||||||||||||||||| Sbjct 692 GCTTCTGCGACACGTCAAGCTTCTTA 717 > AT2G46940.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62070.1); Has 143 Blast hits to 141 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19286658-19287581 REVERSE LENGTH=835 Length=835 Score = 95.3 bits (51), Expect = 7e-19 Identities = 66/73 (90%), Gaps = 2/73 (3%) Strand=Plus/Plus Query 658 GATGATCC-AAAGGAGGTTAAGGCGAGGCTGAAGGTGTGGGCACAAGCAGTAGCTTTAGC 716 |||||||| ||| |||||||||||||| | ||| ||||||||||||||||||||||||| Sbjct 761 GATGATCCGAAA-GAGGTTAAGGCGAGATTAAAGATGTGGGCACAAGCAGTAGCTTTAGC 819 Query 717 TTCTGCGACACGT 729 ||||||| ||||| Sbjct 820 TTCTGCGTCACGT 832 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35967649252 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5