BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349267
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62070.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 830 0.0
AT2G46940.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 95.3 7e-19
> AT3G62070.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G46940.1);
Has 137 Blast hits to 135 proteins in 12 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22983138-22984513
REVERSE LENGTH=1290
Length=1290
Score = 830 bits (449), Expect = 0.0
Identities = 570/624 (91%), Gaps = 26/624 (4%)
Strand=Plus/Plus
Query 1 ATGGCGTTGGACGAGAGCTTAGTGATGGTTTCTTCTTTGTCGAGATTGTCTATATGTACG 60
|||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 32 ATGGCGTTCGAAGAGAGCTTAGTAATGGTTTCTTCTTTGTCGAGATTGTCTATATGTACG 91
Query 61 AGCTCTGCTTACGTCACCGAAGACGAAGCAGCCACGAAGAATCATCTAGATTCGTGTGTT 120
|||||||| | | | | ||||||||||||||||||||||| | |||||||||||||
Sbjct 92 AGCTCTGC-T---T-A-C---GACGAAGCAGCCACGAAGAATCAACCAGATTCGTGTGTT 142
Query 121 TTCACGTCTCTGGAGAATTTCGACGGAGCAGAGGCGGATGGAGAAGTTTCCGATGATGGA 180
| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 143 TCCACATCTCTGGAGAATTTCGACGGAGCAGAGGCGGATGGGGAAGTTTCCGATGATGGA 202
Query 181 GAAGGAAAAGAGAACGTTCGAGAGTCTGATTCCGACAAAGAGACACGTGGGTTTTACTCT 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 203 GAAGGAAAAGAGAACGTTCGAGAGTCAGATTCCGACAAAGAGACACGTGGGTTTTACTCT 262
Query 241 CTTCCGGTGACTCCATCTCGCCGGAGAAGAAAACTTACAGTTTCAGGCGAGTTAGATGCG 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 263 CTTCCGGTGACTCCATCTCGCCGGAGAAGAAAACTTACAGTTTCCGGCGAGTTAGATGCG 322
Query 301 AATGAGAGTAACAGAGACGGCGGTAAGTGTAGTTTACGGAGGCAAAAAAGGTTAGTAAGG 360
||||||||||||| | | ||| |||||||||||||||||||||||| || || ||
Sbjct 323 AATGAGAGTAACAAAAATGGCAGTAAGTGTAGTTTACGGAGGCAAA---GG--AG---GG 374
Query 361 GAAAAGAAGAAAAAGAGAGTTAACGGAGAAAGTGACGGCGGTGGAAGAGAAGGATTAACG 420
|||||||||||||| ||||||||||||| |||||| ||||||||||||||| ||||||
Sbjct 375 -AAAAGAAGAAAAAGGGAGTTAACGGAGAGTGTGACGTCGGTGGAAGAGAAGGCTTAACG 433
Query 421 GTGTTAACGAGAGCGAA-AGGTGGAGAGAAGTCGTTGAGGATGGGGTTAGAAGAAGTGAA 479
||||| |||||||| || ||||||||| | ||||||||||||||||||| ||||||||||
Sbjct 434 GTGTTGACGAGAGC-AAGAGGTGGAGATAGGTCGTTGAGGATGGGGTTACAAGAAGTGAA 492
Query 480 AGCTTGTAGAGATCTCGGGTTCGAATTAGAGGTTCCGGTTCCGGGTCCGGGTCGGATCTC 539
||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 493 AGCTTGTAGAGATCTCGGGTTCGAATTAGAGGTTCCGGTTCCGGGTC-GGAT---ATCT- 547
Query 540 TGTGTCAACAACCGGGTCGAATTTCGATACTCAGACTAGTAGTGGCGGCAACTCACCCAT 599
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 548 -GTGTCAACAACCGGGTCGAATTTCGATACTCAGACTAGTAGCGGCGGCGACTCACCCAT 606
Query 600 CGCCACTTGGCGCATCTCCAGTCC 623
|||||| ||||| |||||||||||
Sbjct 607 CGCCACCTGGCGTATCTCCAGTCC 630
Score = 137 bits (74), Expect = 1e-31
Identities = 82/86 (95%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 655 GGTGATGATCCAAAGGAGGTTAAGGCGAGGCTGAAGGTGTGGGCACAAGCAGTAGCTTTA 714
|||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||||
Sbjct 632 GGTGATGATCCAAAGGAGGTCAAGGCGAGGTTGAAAGTGTGGGCACAAGCGGTAGCTTTA 691
Query 715 GCTTCTGCGACACGTCAAGCTTCTTA 740
||||||||||||||||||||||||||
Sbjct 692 GCTTCTGCGACACGTCAAGCTTCTTA 717
> AT2G46940.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G62070.1);
Has 143 Blast hits to 141 proteins in 14 species: Archae -
0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 139; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19286658-19287581
REVERSE LENGTH=835
Length=835
Score = 95.3 bits (51), Expect = 7e-19
Identities = 66/73 (90%), Gaps = 2/73 (3%)
Strand=Plus/Plus
Query 658 GATGATCC-AAAGGAGGTTAAGGCGAGGCTGAAGGTGTGGGCACAAGCAGTAGCTTTAGC 716
|||||||| ||| |||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 761 GATGATCCGAAA-GAGGTTAAGGCGAGATTAAAGATGTGGGCACAAGCAGTAGCTTTAGC 819
Query 717 TTCTGCGACACGT 729
||||||| |||||
Sbjct 820 TTCTGCGTCACGT 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35967649252
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5