BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg349284

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62190.1 | Symbols:  | Chaperone DnaJ-domain superfamily pro...   688    0.0  


> AT3G62190.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein 
| chr3:23021121-23023332 FORWARD LENGTH=1160
Length=1160

 Score =  688 bits (372),  Expect = 0.0
 Identities = 402/417 (96%), Gaps = 0/417 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGGTGGAGGAAGCCAAGATCTTGCTCGGCTTTCCTCCTAAATCTCGTCCCGATCCT  60
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  26   ATGGAGGTGGAGGAAGCCAAGATCTTGCTCGGCTTTCCTCCTAATTCTCGTCCCGATCCT  85

Query  61   TCTCAGGTTAAAGCTGCTTACCGGAAGAAGGTATGGGAATCACATCCTGACTTATTTCCT  120
            ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct  86   TCTCAGGTTAAAGCTGCTTACAGGAAGAAAGTATGGGAATCACATCCTGACTTATTTCCT  145

Query  121  GATGATCAGAAGCAAGTTGCCGAGTCTAAGTTCAAATCGATATCTGAAGCTTACTCTTGC  180
            |||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  146  GATGATCAGAAGCTTGTTGCCGAGTCTAAGTTCAAATCGATATCTGAAGCTTATTCTTGC  205

Query  181  CTAGAGTCTGGTGATGGTAAAGGTCAACGATATTACAGAGCAGGTGTATATTCGAGGGTC  240
            |||||||||||||||| |||||||||| | ||||||||||||||||| ||||||||||||
Sbjct  206  CTAGAGTCTGGTGATGTTAAAGGTCAATGGTATTACAGAGCAGGTGTGTATTCGAGGGTC  265

Query  241  GTCAAGACTGGAGTTCCTGGGACATATTCATCTGCCAAAAGAGGTAACCGTTGGTTGATC  300
            ||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct  266  GTCAAGACTGGGGTTCCTCGGCCATATTCATCTGCCAAAAGAGGTAACCGTTGGTTGATC  325

Query  301  GGTGCACCTTTCCTTTTGATCGTCTTAGGAACCATCGGACTTGGTGGAATCAAAGCTAAC  360
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  326  GGTGCACCTTTCCTTTTGATTGTCTTAGGAACCATCGGACTTGGTGGAATCAAAGCTAAC  385

Query  361  AGGGCATATAATCTGCAAAAACAGACGTTCCCGTCTCACAATCCTTTCCTTCCTTGA  417
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  386  AGGGCATATAATCTGCAAAAACAGACGTTCCCATCTCACAATCCTTTCCTTCCTTGA  442



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19755225357


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5