BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349295
Length=2061
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62310.1 | Symbols: | RNA helicase family protein | chr3:23... 2025 0.0
AT2G47250.1 | Symbols: | RNA helicase family protein | chr2:19... 1282 0.0
AT5G14900.1 | Symbols: | helicase associated (HA2) domain-cont... 167 4e-40
> AT3G62310.1 | Symbols: | RNA helicase family protein | chr3:23057245-23060731
REVERSE LENGTH=2622
Length=2622
Score = 2025 bits (1096), Expect = 0.0
Identities = 1168/1204 (97%), Gaps = 0/1204 (0%)
Strand=Plus/Plus
Query 1 ATGGGTACGGAGAGAAAGAGGAAAATTAGTCTGTTCGATGTTATGGACGATCCGTCTGCT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 ATGGGTACTGAGAGAAAGAGGAAAATTAGTCTGTTCGATGTTATGGACGATCCGTCTGCT 230
Query 61 GCGGCGAAGAACACCAAAATCAGTGGTCTTGCCGACGGCGGAATCAACAGTCTGATCAAT 120
||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 231 CCGGCGAAGAACGCCAAAACCAGTGGTCTTCCCGACGGCGGAATCAACAGTCTGATCAAT 290
Query 121 AAATGGAACGGGAAGCCTTATTCACAGAGATATTATGACATTCTGGAGAAACGGAGGACT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 AAATGGAACGGGAAGCCTTATTCACAGAGATATTATGACATTCTGGAGAAACGGAGGACT 350
Query 181 CTACCTGTCTGGCTGCAGAAAGAGGAGTTTCTCAAAACTTTGAACAGCAATCAAACTCTA 240
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||
Sbjct 351 CTACCTGTCTGGCTGCAGAAAGAGGAGTTTCTCAAAACGTTGAACAACAATCAAACCCTA 410
Query 241 ATTCTGGTTGGTGAGACCGGTAGTGGTAAAACTACTCAGATTCCACAGTTTGTGATAGAT 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 ATTCTGGTTGGTGAAACCGGTAGTGGTAAAACTACTCAGATTCCACAGTTTGTGATAGAT 470
Query 301 GCTGTGGATTCTGAAACATCGGATAAGCGTAGGAAGTGGTTGGTTGGATGCACACAGCCT 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GCTGTGGATGCTGAAACATCGGATAAGCGTAGGAAGTGGTTGGTTGGATGCACACAGCCT 530
Query 361 CGTAGAGTTGCCGCCATGTCTGTGTCCCGTCGTGTTGCTGAAGAGATGGATGTAACTATT 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CGTAGAGTTGCTGCCATGTCTGTGTCCCGTCGTGTTGCTGAAGAGATGGATGTAACTATT 590
Query 421 GGGGAAGAAGTTGGTTACAGCATCCGTTTCGAGGATTGCAGTAGCCCCAGAACGGTGCTT 480
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 591 GGGGAAGAAGTTGGTTACAGCATCCGTTTCGAGGACTGCAGTAGCCCCAGAACGGTTCTT 650
Query 481 AAGTACTTGACTGATGGTATGCTCCTAAGAGAAGCAATGGCAGACCCGCTTCTAGAGAGA 540
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 651 AAGTACTTGACTGATGGTATGCTCCTGAGAGAAGCAATGGCGGACCCTCTTCTAGAGAGA 710
Query 541 TACAAAGTGATTATTCTCGATGAGGCCCACGAGAGGACTCTAGCCACAGATGTGCTGTTT 600
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 711 TACAAAGTCATTATTCTTGATGAGGCCCACGAAAGGACTCTAGCCACAGATGTGCTGTTT 770
Query 601 GGTCTTCTGAAAGAAGTGTTGAAAAATAGACCTGATCTTAAGTTAGTTGTGATGAGTGCA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GGTCTTCTGAAAGAAGTGTTGAAAAATAGACCTGATCTTAAGTTAGTTGTGATGAGTGCA 830
Query 661 ACTCTAGAAGCTGAAAAGTTTCAGGATTATTTTAGCGGTGCTCCTCTGATGAAAGTTCCT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 ACTCTAGAAGCTGAAAAGTTTCAGGATTATTTTAGCGGTGCTCCTCTGATGAAAGTTCCT 890
Query 721 GGTAGGCTTCATCCTGTTGAGATCTTTTACACTCAGGAGCCTGAGAGGGACTATCTTGAG 780
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 GGTAGGCTTCATCCAGTTGAGATCTTTTACACTCAGGAGCCTGAGAGGGACTATCTTGAG 950
Query 781 GCTGCTATTAGGACTGTTGTCCAGATTCACATGTGTGAGCCACCTGGTGATATTCTTGTT 840
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 951 GCTGCTATTAGAACTGTTGTCCAGATTCACATGTGTGAGCCACCTGGCGATATTCTTGTT 1010
Query 841 TTCTTAACTGGAGAAGAGGAGATCGAAGATGCATGTCGCAAAATCAATAAAGAGGTTGGT 900
||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1011 TTCTTAACTGGGGAGGAGGAGATTGAAGATGCATGCCGCAAAATCAATAAAGAGGTTGGT 1070
Query 901 AATCTCGGAGATCAAGTGGGGCCTATTAAAGTTGTGCCATTGTATTCTACTCTTCCACCT 960
||||| || ||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1071 AATCTTGGGGATCAAGTGGGGCCTATTAAAGTAGTGCCACTGTATTCTACTCTTCCACCT 1130
Query 961 GCGATGCAGCAGAAGATATTTGATCCTGCTCCAGAGCCGGTAACAGAAGGTGGTCCTCCT 1020
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1131 GCGATGCAGCAGAAGATATTTGATCCTGCTCCAGAGCCTGTAACAGAAGGTGGTCCTCCT 1190
Query 1021 GGGAGAAAGATTGTTGTCTCGACTAACATTGCTGAGACTTCTCTAACCATAGATGGGATT 1080
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1191 GGGAGAAAGATTGTTGTCTCCACTAACATTGCTGAGACTTCTCTCACCATAGATGGGATT 1250
Query 1081 GTGTACGTCATTGATCCTGGTTTTGCTAAGCAAAAAGTCTACAACCCTCGAATCCGTGTT 1140
|| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1251 GTCTACGTCATTGACCCTGGTTTTGCTAAGCAAAAAGTCTATAACCCTCGAATCCGTGTT 1310
Query 1141 GAGTCTTTGTTGGTGTCCCCAATTTCAAAGGCAAGTGCTCACCAGAGATCTGGTCGTGCC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GAGTCTTTGTTGGTGTCCCCAATTTCAAAGGCAAGTGCTCACCAGAGATCTGGTCGTGCC 1370
Query 1201 GGTA 1204
||||
Sbjct 1371 GGTA 1374
Score = 1046 bits (566), Expect = 0.0
Identities = 598/614 (97%), Gaps = 0/614 (0%)
Strand=Plus/Plus
Query 1448 TACCGAATTGCTTTGTCCGGCCTAGAGAGGCTCAAAAAGCAGCAGATGAAGCTAAAGCTA 1507
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 TACCGAATTGCTTTATTCGGCCTAGAGAGGCTCAAAAAGCAGCAGATGAAGCTAAAGCTA 1797
Query 1508 GGTTTGGACACATTGATGGAGATCACCTCACATTGTTGAATGTCTACCACGCTTTCAAGC 1567
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 GGTTTGGACACATTGAGGGAGATCACCTCACATTGTTGAATGTCTACCACGCTTTCAAGC 1857
Query 1568 AACACAATGAAGATCCAAATTGGTGCTATGAAAACTTCATCAACAACAGAGCGATGAAAT 1627
|| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1858 AAAACAATGAGGATCCAAATTGGTGCTATGAAAACTTCATCAACAATAGAGCGATGAAAT 1917
Query 1628 CTGCAGACAATGTTAGACAGCAGCTAGTTCGGATAATGTCAAGATTCAACCTGAAGATGT 1687
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1918 CTGCAGACAATGTTAGACAGCAGCTAGTCCGGATAATGTCAAGATTCAACCTGAAGATGT 1977
Query 1688 GCAGCACTGATTTTAACAGCCGCGACTACTACATCAACATAAGGAAGGCCATGCTTGCCG 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 GCAGCACTGATTTTAACAGCCGCGACTACTACATCAACATAAGGAAGGCCATGCTTGCCG 2037
Query 1748 GTTATTTCATGCAAGTGGCTCACTTAGAACGTACTGGCCATTACTTGACCGTCAAAGACA 1807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 GTTATTTCATGCAAGTGGCTCACTTAGAACGTACTGGCCATTACTTGACCGTCAAAGACA 2097
Query 1808 ACCAAGTGGTTCATTTGCATCCATCAAATTGCTTGGATCACAAACCGGAGTGGGTAATCT 1867
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2098 ACCAAGTGGTTCATTTGCATCCATCCAATTGCTTGGATCACAAACCGGAGTGGGTAATCT 2157
Query 1868 ACAATGAATATGTTTTGACTAGCCGGAATTTCATAAGAACTGTGACAGACATTCGTGGTG 1927
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2158 ACAACGAATATGTTTTGACTAGCCGGAATTTCATCAGAACTGTGACAGACATTCGTGGTG 2217
Query 1928 AATGGCTAGTAGATGTTGCTTCTCATTATTACGATCTTTCAAACTTTCCCAACTGCGAAG 1987
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 2218 AATGGCTAGTTGATGTTGCTTCTCATTATTACGATCTTTCGAACTTTCCCAACTGTGAAG 2277
Query 1988 CCAAACGTGTCATCgagaagctttataagaaaagagaaagggagaaggaagagagcaaga 2047
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2278 CCAAACGTGTAATCGAGAAGCTTTATAAGAAGAGAGAAAGGGAGAAGGAAGAGAGCAAGA 2337
Query 2048 agaaccggaagTGA 2061
|||||||||| |||
Sbjct 2338 AGAACCGGAAATGA 2351
Score = 230 bits (124), Expect = 6e-59
Identities = 128/130 (98%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 1201 GGTAACTTGACAAAGACAGGTGAGATCATGAGTGAGTTCCCCTTGGATCCACAGATGGCA 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 GGTAACTTGACAAAGACAGGTGAGATCATGAGTGAGTTCCCCTTGGATCCACAGATGGCA 1667
Query 1261 AAGATGCTCATAGTCAGTCCTGAATTCAACTGCTCAAACGAGATTCTCTCAGTTTCAGCC 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 AAGATGCTCATAGTCAGTCCTGAATTCAACTGCTCAAACGAGATTCTCTCAGTTTCAGCT 1727
Query 1321 ATGCTCTCAG 1330
||||| ||||
Sbjct 1728 ATGCTATCAG 1737
> AT2G47250.1 | Symbols: | RNA helicase family protein | chr2:19399694-19403044
REVERSE LENGTH=2482
Length=2482
Score = 1282 bits (694), Expect = 0.0
Identities = 1057/1229 (86%), Gaps = 38/1229 (3%)
Strand=Plus/Plus
Query 1 ATGGGTACGGAGAGAAAGA-GGAAAATTAGTCTGTTCGATGTTATGGACGATCCGTCTGC 59
|||||||| |||||||| | |||| ||||| |||||||||||||||| ||||| ||| |
Sbjct 64 ATGGGTACAGAGAGAAA-ACGGAAGGTTAGTTTGTTCGATGTTATGGAAGATCCTTCT-C 121
Query 60 -TGCGGCGAAGAACACCAAAAT-C-A--G--T-GGTCTTGC--CGACGGC-GG-AAT-CA 106
| || ||||||||||| |||| | | | | || ||||| || |||| || | |
Sbjct 122 TTTCGTCGAAGAACACC-AAATCCAATGGTCTCGGACTTGCGGCGGCGGCTGGTGGTGGA 180
Query 107 A-CAGTCTGATCAATAAATGGAACGGGAAGCCTTATTCACAGAGATATTAT-GACATTCT 164
| || ||||||||| ||||||||||| ||| ||||||| ||||| |||| | || |||||
Sbjct 181 AGCAATCTGATCAACAAATGGAACGGAAAGGCTTATTCTCAGAGGTATT-TCGAGATTCT 239
Query 165 GGAGAA-ACGGAG-GACTCTACCTGTCTGGCTGCAGAAAGAGGAGTTTCTCAAAACTTTG 222
|||||| | |||| || ||| || || ||||| |||||||| || |||||||| ||||||
Sbjct 240 GGAGAAGA-GGAGAGA-TCTTCCCGTTTGGCTCCAGAAAGATGACTTTCTCAATACTTTG 297
Query 223 AACAGC-AATCAAACTCTAATTCTGGTTGGTGAGACCGGTAGTGGTAAAACTACTCAGAT 281
||| | ||||||||||| || || || ||||| || ||||||||||||||||| |||||
Sbjct 298 AAC-TCTAATCAAACTCTCATACTCGTCGGTGAAACTGGTAGTGGTAAAACTACACAGAT 356
Query 282 TCCACAGTTTGTGA-TAGATGCTGTGGAT-TCTGA-AACATCGGATAAGCGTAGGAAGTG 338
|||||||||||| | |||||||||||| | |||| ||| || |||||| | ||||| ||
Sbjct 357 TCCACAGTTTGT-ATTAGATGCTGTGG-TGGCTGACAAC-TCCGATAAGGGAAGGAAATG 413
Query 339 GTTGGTTGGATGCACACAGCCTCGTAGAGTTGCCGCCATGTCTGTGTCCCGTCGTGTTGC 398
|||||||||||| || ||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 414 GTTGGTTGGATGTACCCAGCCTCGTAGAGTTGCTGCAATGTCTGTGTCTCGTCGTGTTGC 473
Query 399 TGAAGAGATGGATGTAACTATTGGGGAAGAAGTTGGTTACAGCATCCGTTTCGAGGATTG 458
||| || |||||||| | ||||| ||||||||||||||||| || ||||| ||||||||
Sbjct 474 TGATGAAATGGATGTCTCCATTGGTGAAGAAGTTGGTTACAGTATTCGTTTTGAGGATTG 533
Query 459 CAGTAGC-CCCAGAACGGTGCTTAAGTACTTGACTGATGGTATGCTCCTAAGAGAAGCAA 517
| |||| | | | || |||||||||| ||||||||||||||||| | ||||| ||||
Sbjct 534 TACTAGCTCTC-GTACTATGCTTAAGTATTTGACTGATGGTATGCTTTTGAGAGAGGCAA 592
Query 518 TGGCAGACCCGCTTCTAGAGAGATACAAAGTGATTATTCTCGATGAGGCCCACGAGAGGA 577
|||| || |||||| |||||||||||||||| |||||||||||||| || || || ||||
Sbjct 593 TGGCGGATCCGCTTTTAGAGAGATACAAAGTTATTATTCTCGATGAAGCTCATGAAAGGA 652
Query 578 CTCTAGCCACAGATGTGCTGTTTGGTCTTCTGAAAGAAGTGTTGAAAAATAGACCTGATC 637
|||||||||| |||||||| ||||||||||| ||||| || |||| ||||| |||||||
Sbjct 653 CTCTAGCCACGGATGTGCTCTTTGGTCTTCTCAAAGAGGTCTTGAGGAATAGGCCTGATC 712
Query 638 TTAAGTTAGTTGTGATGAGTGCAACTCTAGAAGCTGAAAAGTTTCAGGATTATTTTAGCG 697
||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 713 TTAAGCTAGTTGTCATGAGTGCAACTTTAGAAGCTGAAAAGTTTCAGGAATATTTTAGCG 772
Query 698 GTGCTCCTCTGATGAAAGTTCCTGGTAGGCTTCATCCTGTTGAGATCTTTTACACTCAGG 757
|||||||||| |||||||| ||||||||||||||||||||||||||||| || || ||||
Sbjct 773 GTGCTCCTCTTATGAAAGTCCCTGGTAGGCTTCATCCTGTTGAGATCTTCTATACACAGG 832
Query 758 AGCCTGAGAGGGACTATCTTGAGGCTGCTATTAGGACTGTTGTCCAGATTCACATGTGTG 817
| ||||||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||| |
Sbjct 833 AACCTGAGAGGGATTATCTCGAGGCTGCTATAAGGACTGTTGTTCAGATACACATGTGCG 892
Query 818 AGCCACCTGGTGATATTCTTGTTTTCTTAACTGGAGAAGAGGAGATCGAAGATGCATGTC 877
|||||||||| |||||||||||||||||||||||||| ||||| || |||||||| || |
Sbjct 893 AGCCACCTGGAGATATTCTTGTTTTCTTAACTGGAGAGGAGGAAATAGAAGATGCTTGCC 952
Query 878 GCAAAATCAATAAAGAGGTTGGTAATCTCGGAGATCAAGTGGGGCCTATTAAAGTTGTGC 937
| ||||||||||||||||| | ||||| |||||||||||||| ||| | ||||||||||
Sbjct 953 GTAAAATCAATAAAGAGGTCAGCAATCTTGGAGATCAAGTGGGTCCTGTCAAAGTTGTGC 1012
Query 938 CATTGTATTCTACTCTTCCACCTGCGATGCAGCAGAAGATATTT-GATCCTGCTCCAGAG 996
| |||||||||||||||||||||||||||||||||||||| ||| || |||||||||| |
Sbjct 1013 CTTTGTATTCTACTCTTCCACCTGCGATGCAGCAGAAGAT-TTTCGACCCTGCTCCAGTG 1071
Query 997 CCGGTAACAGAAGGTGGTCCTCCTGGGA-GAAAGATTGTTGTCTCGACTAACATTGCTGA 1055
||| ||||||||||||||||| |||| | |||||||||||||||| || |||||||||||
Sbjct 1072 CCGTTAACAGAAGGTGGTCCTGCTGG-ACGAAAGATTGTTGTCTCAACCAACATTGCTGA 1130
Query 1056 GACTTCTCTAACCATAGATGGGATTGTGTACGTCATTGATCCTGGTTTTGCTAAGCAAAA 1115
|| ||||||||||| ||||||||||| || || ||||| ||||||||||||||||| ||
Sbjct 1131 AACCTCTCTAACCATTGATGGGATTGTTTATGTTATTGACCCTGGTTTTGCTAAGCAGAA 1190
Query 1116 AGTCTACAACCCTCGAATCCGTGTTGAGTCTTTGTTGGTGTCCCCAATTTCAAAGGCAAG 1175
|||||||||||| || || || |||||||| ||||||||||||||||| |||||||||||
Sbjct 1191 AGTCTACAACCCACGGATTCGAGTTGAGTCATTGTTGGTGTCCCCAATATCAAAGGCAAG 1250
Query 1176 TGCTCACCAGAGATCTGGTCGTGCCGGTA 1204
||||||||||||||| |||||||| ||||
Sbjct 1251 TGCTCACCAGAGATCAGGTCGTGCTGGTA 1279
Score = 721 bits (390), Expect = 0.0
Identities = 544/618 (88%), Gaps = 11/618 (2%)
Strand=Plus/Plus
Query 1448 TACCGAATTGCTTTGTCCGGCCTAGAGAGGCTCAAAAAGCAGCAGATGAAGCTAAAGCTA 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 TACCGAATTGCTTTGTCCGGCCTAGAGAGGCTCAAAAAGCAGCAGATGAAGCTAAAGCTA 1702
Query 1508 GGTTTGGACACATTGATGGAGATCACCTCACATTGTTGAATGTCTACCACGCTTTCAAGC 1567
|||||||||||||||||||||||||||| || ||| | || || |||||||| | |||||
Sbjct 1703 GGTTTGGACACATTGATGGAGATCACCTGACGTTGCTAAACGTGTACCACGCCTACAAGC 1762
Query 1568 AACACAATGAAGATCCAAATTGGTGCTAT-GAAAACTTCATCAACAACAGAGCGATGAAA 1626
|| |||||||||| ||||| ||||| | | || ||||| ||||||||||||| ||||||
Sbjct 1763 AAAACAATGAAGACCCAAACTGGTGTT-TCGAGAACTTTGTCAACAACAGAGCAATGAAA 1821
Query 1627 TCTGCAGACAATGTTAGACAGCAGCTAGTTCGGATAATGTCAAGATTCAACCTGAAGATG 1686
|||||||||||||| |||||||||||||| ||||||||||| || || || |||||||||
Sbjct 1822 TCTGCAGACAATGTCAGACAGCAGCTAGTGCGGATAATGTCGAGGTTTAATCTGAAGATG 1881
Query 1687 TGCAGCACTGATTTTAACAGCCGCGACTACTACATCAACATAAGGAAGGCCATGCTTGCC 1746
|||||||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1882 TGCAGCACGGATTTCAACAGCCGCGACTACTATGTCAACATAAGAAAGGCCATGCTTGCT 1941
Query 1747 GGTTATTTCATGCAAGTGGCTCACTTAGAACGTACTGGCCATTACTTGACCGTCAAAGAC 1806
|||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1942 GGTTATTTTATGCAGGTGGCTCACCTAGAACGCACTGGCCATTACTTGACCGTCAAAGAT 2001
Query 1807 AACCAAGTGGTTCATTTGCATCCATCAAATTGCTTGGATCACAAACCGGAGTGGGTAATC 1866
|||||||||||||| ||||||||||| |||||| ||||||||||||| |||||||| ||
Sbjct 2002 AACCAAGTGGTTCACTTGCATCCATCTAATTGCCTGGATCACAAACCAGAGTGGGTGATT 2061
Query 1867 TACAATGAATATGTTTTGACTAGC-CGGAATTTCATAAGAACTGTGACAGACATTCGTGG 1925
|||||||||||||| ||||||| | |||||||||||| | ||||| ||||| || || ||
Sbjct 2062 TACAATGAATATGTCTTGACTA-CTCGGAATTTCATACGCACTGTTACAGATATCCGCGG 2120
Query 1926 TGAATGGCTAGTAGATGTTGCTTCT-CATTATTACGATCTTTCAAACTTTCCCAACTGCG 1984
||||||| |||| ||||||||| | ||||| || |||||||| ||||| |||||||| |
Sbjct 2121 TGAATGGTTAGTCGATGTTGCT-CAGCATTACTATGATCTTTCCAACTTCCCCAACTGTG 2179
Query 1985 AAGCCAAACGTGTCATCgagaagctttataagaaaagagaaagggagaaggaa-gagagc 2043
|||| ||||| | | ||||||||||||| ||||| ||||| |||| ||| || ||||||
Sbjct 2180 AAGCAAAACGAGCCCTCGAGAAGCTTTACAAGAAGAGAGAGCGGGAAAAG-AACGAGAGC 2238
Query 2044 aagaagaaccggaagTGA 2061
||||| ||||||||||
Sbjct 2239 AAGAA---CCGGAAGTGA 2253
Score = 158 bits (85), Expect = 3e-37
Identities = 115/130 (88%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 1201 GGTAACTTGACAAAGACAGGTGAGATCATGAGTGAGTTCCCCTTGGATCCACAGATGGCA 1260
||||||||||||||||| ||||| || |||||||| || |||||||||||||| ||| ||
Sbjct 1513 GGTAACTTGACAAAGACGGGTGAAATAATGAGTGAATTTCCCTTGGATCCACAAATGTCA 1572
Query 1261 AAGATGCTCATAGTCAGTCCTGAATTCAACTGCTCAAACGAGATTCTCTCAGTTTCAGCC 1320
|||||||||||||||||||||||||||||||| || || ||||||||||| ||||| ||
Sbjct 1573 AAGATGCTCATAGTCAGTCCTGAATTCAACTGTTCCAATGAGATTCTCTCGGTTTCTGCA 1632
Query 1321 ATGCTCTCAG 1330
||| | ||||
Sbjct 1633 ATGTTATCAG 1642
> AT5G14900.1 | Symbols: | helicase associated (HA2) domain-containing
protein | chr5:4822676-4823581 REVERSE LENGTH=906
Length=906
Score = 167 bits (90), Expect = 4e-40
Identities = 117/130 (90%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 1202 GTAACTTGACAAAGACAGGTGAGATCATGAGTGAGTTCCCCTTGGATCCACAGATGGCAA 1261
||||||||||||||||||||||||| ||||||||||| || || || |||||||||||||
Sbjct 149 GTAACTTGACAAAGACAGGTGAGATGATGAGTGAGTTTCCTTTAGACCCACAGATGGCAA 208
Query 1262 AGATGCTCATAGTCAGTCCTGAATTCAACTGCTCAAACGAGATTCTCTC-AGTTTCAGCC 1320
|||||||||||||||||||| ||||||||||||||||||||||||| || | |||| ||
Sbjct 209 AGATGCTCATAGTCAGTCCTCAATTCAACTGCTCAAACGAGATTCTTTCGA-TTTCTGCG 267
Query 1321 ATGCTCTCAG 1330
||| | ||||
Sbjct 268 ATGTTATCAG 277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102158109075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5