BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349310
Length=393
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62460.1 | Symbols: | Putative endonuclease or glycosyl hyd... 425 1e-118
> AT3G62460.1 | Symbols: | Putative endonuclease or glycosyl hydrolase
| chr3:23104665-23105624 REVERSE LENGTH=868
Length=868
Score = 425 bits (230), Expect = 1e-118
Identities = 244/251 (97%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 143 GTATCGAGCTCAAGCGCGTACGAGAAGGCTCGAAAGGAAAGGATCATTCGAGAGATATAG 202
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 398 GTATCGAGCTCAAGCGCGTACCAGAAGGCTTGAAAGGAAAGGATCATTCGAGAGATATAG 457
Query 203 CTGTTTTAACTGGCATGGGGGTGTGGATTGCTGTCAATCGTGATGTATCATCATCGATAA 262
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 458 CTGTTTTAACTGGCATGGGGGTGTGGATTACTGTCAATCGTGATGTATCATCATCGATAA 517
Query 263 TGCTAATCTCTGATAGTATCTATGATTTTGCTGTAGACGAGTTTAAGAAGGTGAATCATT 322
|||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 518 TGCTAATCTCAGATAGCATCTACGGTTTTGCTGTAGACGAGTTTAAGAAGGTGAATCATT 577
Query 323 ATGTTCTTTGGAAAAAACTATCAGCTAAGGGCAAGCCTATCGCCCAGACCAGAAGATACT 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 ATGTTCTTTGGAAAAAACTATCAGCTAAGGGCAAGCCTATCGCCCAGACCAGAAGATACT 637
Query 383 CTAAACGTTGA 393
|||||||||||
Sbjct 638 CTAAACGTTGA 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18548799381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5