BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349318
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62610.1 | Symbols: ATMYB11, PFG2, MYB11 | myb domain protei... 1404 0.0
AT2G47460.1 | Symbols: MYB12, ATMYB12, PFG1 | myb domain protei... 416 2e-115
> AT3G62610.1 | Symbols: ATMYB11, PFG2, MYB11 | myb domain protein
11 | chr3:23154758-23156585 FORWARD LENGTH=1246
Length=1246
Score = 1404 bits (760), Expect = 0.0
Identities = 910/983 (93%), Gaps = 8/983 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGCGCCTTGCTGTGAGAAGGTAGGAATGAAGAAGGGGCGCTGGACGGCGGAG 60
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGAAGGGCGCCGTGCTGTGAGAAGGTAGGAATTAAGAAGGGGCGCTGGACGGCGGAG 60
Query 61 GAAGACCAGATTCTCTCCGACTACATTCAGTCCAACGGCGAAGGCTCATGGCGTTCTCTT 120
||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GAAGACCGGACTCTCTCCGACTACATTCAGTCCAACGGCGAAGGATCATGGCGTTCTCTT 120
Query 121 CCCAAAAATGCCGGGCTAAAGAGATGTGGAAAGAGCTGTAGATTGAGATGGATAAACTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCAAAAATGCCGGGCTAAAGAGATGTGGAAAGAGCTGTAGATTGAGATGGATAAACTAT 180
Query 181 TTGAGATCAGACCTCAAGAGAGGAAACATAACTCCTGAAGAAGAGGACCTCATTGTTAAA 240
|||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 181 TTGAGATCAGACATCAAGAGAGGAAACATAACTCCCGAAGAAGAGGACGTCATTGTTAAA 240
Query 241 TTGCATTCCACTTTGGGAAACAGGTGGTCAATAATTGCGAGCAATCTACCGGGAAGAACA 300
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 CTGCATTCCACTTTGGGAACCAGGTGGTCAACAATTGCGAGCAATCTACCGGGAAGAACA 300
Query 301 GACAATGAAATTAAAAACTATTGGAATTCTCATCTCAGCCGTAAATTCCACGGTTACTTC 360
||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GACAACGAAATAAAAAACTATTGGAATTCTCATCTCAGCCGTAAACTCCACGGTTACTTC 360
Query 361 AGGAAACCAACCGTCACTACTGTAGTCGAGAATGCGCCTCCGCCTCCGAAGCGTAGACCC 420
|| |||||||| ||| | | | ||||||||||||||||||||||| |||||||||||
Sbjct 361 AGAAAACCAACTGTCGCCAATACCGTCGAGAATGCGCCTCCGCCTCCTAAGCGTAGACCT 420
Query 421 GGAAGAACCAGCAGATCGGCCATGAAACCCAAATTTATCCTAAACCTTAAAAACCACAAA 480
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 GGAAGAACCAGCAGATCCGCCATGAAACCCAAATTTATCCTAAACCCTAAAAACCACAAA 480
Query 481 AACCCTAATTCTTT-AAAGGCAAGCAAAAACGACATTGTTTTGCCAACTACAACAATAGA 539
| |||||||||||| |||| ||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 481 ACCCCTAATTCTTTTAAAG-CAAACAAAAGTGACATCGTTTTGCCAACTACGACAATAGA 539
Query 540 GAATGGAGAGGGAGAAAAAGAAGACGCATTAATGGGGTTGTCAAGTAGTAGCTTAAGTCG 599
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 540 GAATGGAGAGGGAGACAAAGAAGACGCATTAATGGTGTTGTCAAGTAGTAGCTTAAGTGG 599
Query 600 AGCCA-AGGAGCCTGGTTTAAGACCATGTGGCTATGGAGACGATGGTTATTGTAACCCAA 658
||| | |||| || |||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct 600 AGC-AGAGGAACCCGGTTTAGGACCATGTGGTTATGGAGACGATGGCGATTGTAACCCAA 658
Query 659 GCATTGATGGCGACGTTGGAGTTTTGTCTCTCAATGACGATATTTTCGATTCTTGTTTTC 718
||||| ||||||||| ||||| ||||| |||||||||||| |||||||||||||||||||
Sbjct 659 GCATTAATGGCGACGATGGAGCTTTGTGTCTCAATGACGACATTTTCGATTCTTGTTTTC 718
Query 719 TATTGGACGAGC-CTTATGCTGTCCACGTGTCCTCATGTGAGTCGAACAGCGTAAAAAAC 777
|||||||||| | || ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 719 TATTGGACGA-CTCTCATGCTGTCCACGTGTCCTCATGTGAGTCGAACAACGTAAAAAAC 777
Query 778 TCTGAACCATATGGAGGTG-TCTCCGTTGGGCACAAAAATATCGAGTCGATGGCTGATGA 836
||||| ||||||||||| | | || |||||||||||||||||||| |||||||||||||
Sbjct 778 TCTGAGCCATATGGAGG-GATGTCAGTTGGGCACAAAAATATCGAAACGATGGCTGATGA 836
Query 837 CTTCGCTGACTGGGACTTTGTATGGGGAGAAGGTGAAACTCTTTGGGACGAAACAGAGGA 896
|||| ||||||||||||||||||| |||||||| |||| ||||||||||||| ||||||
Sbjct 837 TTTCGTTGACTGGGACTTTGTATGGAGAGAAGGTCAAACCCTTTGGGACGAAAAAGAGGA 896
Query 897 TCTTGATTCGGTTTTGTCGTGGCTGTTAAATGGAGAGGAAATGGAATCTGAGACCAGACA 956
||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||
Sbjct 897 TCTTGATTCGGTTTTGTCGAGGCTGTTAGATGGAGAGGAAATGGAATCTGAGATCAGACA 956
Query 957 GAGGGGCTCCAACGACTTTGGAG 979
|||| |||||||||||||||||
Sbjct 957 AAGGGACTCCAACGACTTTGGAG 979
> AT2G47460.1 | Symbols: MYB12, ATMYB12, PFG1 | myb domain protein
12 | chr2:19476337-19479478 FORWARD LENGTH=1453
Length=1453
Score = 416 bits (225), Expect = 2e-115
Identities = 312/354 (88%), Gaps = 6/354 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGCGCCTTGCTGTGAGAAGGTAGGAATGAAGAAG-GGGCGCTGGACGGCGGA 59
|||||||||||||| || || |||||||| || || ||| || ||||| |||||||||||
Sbjct 102 ATGGGAAGAGCGCCATGTTGCGAGAAGGTCGGTATCAAG-AGAGGGCGGTGGACGGCGGA 160
Query 60 GGAAGACCAGATTCTCTCCGACTACATTCAGTCCAACGGCGAAGGCTCATGGCGTTCTCT 119
||| ||||||||||||||| |||||||||| |||||||| ||||| || ||| | |||||
Sbjct 161 GGAGGACCAGATTCTCTCCAACTACATTCAATCCAACGGTGAAGGTTCTTGGAGATCTCT 220
Query 120 TCCCAAAAATGCCGGGCTAAAGAGATGTGGAAAGAGCTGTAGATTGAGATGGATAAACTA 179
|||||||||||||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct 221 CCCCAAAAATGCCGGATTAAAAAGGTGTGGAAAGAGCTGTAGATTGAGATGGATAAACTA 280
Query 180 TTTGAGATCAGACCTCAAGAGAGGAAACATAACTCCTGAAGAAGAGGACCTCATTGTTAA 239
| | ||||||||||||||| | |||||||||||||| |||||||| || ||| |||||||
Sbjct 281 TCTAAGATCAGACCTCAAGCGTGGAAACATAACTCCAGAAGAAGAAGAACTCGTTGTTAA 340
Query 240 ATTGCATTCCACTTTGGGAAACAGGTGGTCAATAATTGCGAG-CAATCTACC-GGGAAGA 297
||||||||||||||||||||||||||||||| |||| ||| | || |||||| |||| ||
Sbjct 341 ATTGCATTCCACTTTGGGAAACAGGTGGTCACTAATCGCGGGTCA-TCTACCAGGGA-GA 398
Query 298 ACAGACAATGAAATTAAAAACTATTGGAATTCTCATCTCAGCCGTAAATTCCAC 351
|||||||| ||||| ||||| |||||||| |||||||||||||||||| |||||
Sbjct 399 ACAGACAACGAAATAAAAAATTATTGGAACTCTCATCTCAGCCGTAAACTCCAC 452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5