BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg349378

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G63230.2 | Symbols:  | Protein of unknown function (DUF581) ...   359    1e-98


> AT3G63230.2 | Symbols:  | Protein of unknown function (DUF581) 
| chr3:23359633-23360338 FORWARD LENGTH=468
Length=468

 Score =  359 bits (194),  Expect = 1e-98
 Identities = 251/278 (90%), Gaps = 6/278 (2%)
 Strand=Plus/Plus

Query  11   TAATGGTTCCGAGAAAGAGACCGCGAGCGCCAAGCTTCTCCGATAAGCATCCTGATGAGT  70
            ||||| ||||||| |||||||||||||| ||||||||||| || ||||||||  |  |||
Sbjct  11   TAATGATTCCGAGCAAGAGACCGCGAGCCCCAAGCTTCTCTGAGAAGCATCC--A-AAGT  67

Query  71   ACGTAGGTTCTTCGGATTGGTTGCCGGCCGAGAAAGACAAGGCTCAGGTTCAGGTCAATA  130
            |||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||
Sbjct  68   ACGTAGGTTCTTCGGATTGGTTGCCGGCAGAGAAAGACAAGGCTCAAGTTCAGCTCACTA  127

Query  131  ACTTCCTTGAGCTATGCCGTTTCTGCAAGAAGAACCTGCGTCACGACGAGGACGTTTTCA  190
            |||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||
Sbjct  128  ACTTCCTTGAGCTATGTCGTTTCTGCAAGAAGAATCTACGTCATGACGAGGACGTTTTCA  187

Query  191  TGTACGGATACTTTGGGGCATTCTGTTCAAAACAATGCAGAGCAAAACAGATGGCGTTG-  249
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | 
Sbjct  188  TGTACGGATACTTGGGGGCATTCTGTTCAAAACAATGCAGAGCAAAACAGATGGCAT-GC  246

Query  250  GACATCTTTAGGGAATTCCCGCGACAGAAAGCAA-TTG  286
            ||| ||||||| || ||| || |||||||||||| |||
Sbjct  247  GACGTCTTTAGAGATTTCTCGAGACAGAAAGCAAATTG  284



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17040766911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5