BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349389
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63350.1 | Symbols: AT-HSFA7B, HSFA7B | winged-helix DNA-bin... 826 0.0
> AT3G63350.1 | Symbols: AT-HSFA7B, HSFA7B | winged-helix DNA-binding
transcription factor family protein | chr3:23399468-23400812
FORWARD LENGTH=849
Length=849
Score = 826 bits (447), Expect = 0.0
Identities = 541/586 (92%), Gaps = 8/586 (1%)
Strand=Plus/Plus
Query 310 GGATTCAGGAAGATCGAGGCAGAGCGATGGGAGTTTATGAATGAAGGTTTCTCGATGGGT 369
|||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 262 GGATTCAGAAAGATCGAGGCAGAGAGATGGGAGTTTATGAATGAAGGTTTCTTGATGGGT 321
Query 370 CAGAGGGACCTTCTCAAAAGCATCAAGCGACGAACCTCATCCTCTTCCCCTCCTACGCTT 429
|||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 322 CAGAGGGACCTTCTCAAAAGCATCAAGCGACGAACCTCCTCTTCTTCCCCTCCTTCGCTT 381
Query 430 AAC--CACT-A---TCAACCCGATGG-TGATGACCCAAGCGTCGAGCTTCCGCAGCTCCA 482
||| | || | ||| ||||| || | |||||||| |||||||||||||||||||||
Sbjct 382 AACTACTCTCAGTCTCAGCCCGA-GGCTCATGACCCAGGCGTCGAGCTTCCGCAGCTCCG 440
Query 483 AGAAGAGAGGCATGTCGTAATGATGGAGATCTCGACGCTCAGACAGGAGGAGCAAAGAGC 542
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 AGAAGAGAGGCATGTCCTAATGATGGAGATCTCGACGCTCAGACAGGAGGAGCAAAGAGC 500
Query 543 GAGAGGCTACATCCAAGCCATGGAACAGAGGATTAATGGAGCAGAGATGAAACAGAGGCA 602
|||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 501 GAGAGGCTACGTCCAAGCCATGGAGCAGAGGATTAATGGAGCAGAGAAGAAACAGAGGCA 560
Query 603 TATGATGTCCTTCTTGAGGCGTGCAGTGCAGGACCCTTCGCTTCTGCAGCAGCTATTCGA 662
|||||||||||||||||||||||| ||| || | ||||| |||||||||||| | |||||
Sbjct 561 TATGATGTCCTTCTTGAGGCGTGCGGTGGAGAATCCTTCCCTTCTGCAGCAGATTTTCGA 620
Query 663 GCAGAAGAAAGACCAAGAGGAGGCTACGATGTTTGAACAGGCTGGCCTGGTCAAAACGGA 722
|||||||| ||||| ||||||||| ||||| |||| ||||||||| || |||||| |||
Sbjct 621 GCAGAAGAGAGACCGAGAGGAGGCCGCGATGATTGATCAGGCTGGCTTGATCAAAATGGA 680
Query 723 AGCGGTGGAGCACCTGTCGGAGCTGGAGGCTCTGGCGCTTGAGATGCAAGGATATGGACG 782
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 AGAGGTGGAGCACCTGTCGGAGCTGGAGGCTCTGGCGCTTGAGATGCAAGGATATGGACG 740
Query 783 GCAACGGGCTGATGGTGTGGAGAGGGAGCTTGACGACGGGTTTTGGGAAGAGTTACTGAT 842
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 741 GCAACGGACTGATGGTGTGGAGAGGGAGCTTGACGACGGGTTTTGGGAAGAGTTACTCAT 800
Query 843 GAACAACGACAACTCCGAGGAAGAAGAGGCGAATGTGAAGCAAGAT 888
|||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 801 GAACAATGAAAACTCCGACGAAGAAGAGGCGAATGTGAAGCAAGAT 846
Score = 449 bits (243), Expect = 2e-125
Identities = 255/261 (98%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 1 ATGGACCCGTCGTCAAGCTCCAGAGCACGGTCAATGCCGCCTCCAGTGCCTATGGAGGGA 60
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 1 ATGGACCCGTCGTCAAGCTCCAGAGCACGGTCAATGCCACCGCCGGTGCCTATGGAGGGA 60
Query 61 TTGCAGGAAGCAGGGCCTTCTCCGTTTCTAACAAAGACGTTCGAGATGGTTGGTGATCCA 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGCAGGAAGCAGGGCCTTCTCCTTTTCTAACAAAGACGTTCGAGATGGTTGGTGATCCA 120
Query 121 AACACCAACCACATTGTGTCTTGGAACAGGGGAGGCATCAGTTTTGTCGTGTGGGATCCA 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACACAAACCACATTGTGTCTTGGAACAGGGGAGGCATCAGTTTTGTCGTGTGGGATCCA 180
Query 181 CATTCCTTCTCGGCCACTATTCTGCCTCTATACTTCAAGCACAACAACTTCTCCAGCTTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATTCCTTCTCGGCCACTATTCTGCCTCTATACTTCAAGCACAACAACTTCTCCAGCTTT 240
Query 241 GTCAGACAACTCAACACTTAT 261
||||||||||| |||||||||
Sbjct 241 GTCAGACAACTTAACACTTAT 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43653473743
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5