BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349416
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01930.1 | Symbols: MAN6, AtMAN6 | Glycosyl hydrolase superf... 2266 0.0
AT5G01920.1 | Symbols: STN8 | Protein kinase superfamily protei... 752 0.0
> AT5G01930.1 | Symbols: MAN6, AtMAN6 | Glycosyl hydrolase superfamily
protein | chr5:361081-362901 REVERSE LENGTH=1489
Length=1489
Score = 2266 bits (1227), Expect = 0.0
Identities = 1307/1347 (97%), Gaps = 0/1347 (0%)
Strand=Plus/Plus
Query 1 ATGAAGGACCAACTTGGATTCAGAATCGTGCTCTGTTCTGCGATTTTCATAATTCTGACA 60
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 35 ATGAAGGACCAACTTGGATTCAGAATTGTGCTCTGTTCTGCGGTTTTCATAATTCTGACT 94
Query 61 CAAAACAGAGCTCTCGCAGACTTGGACAGCGAGTCCCACGGGGTTAACTCAGAATCAGTA 120
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 95 CAAAACAGAGCTCTCGCAGACTTGGACAGCGAGTCCCATGAGGTTAACTCAGAATCGGTA 154
Query 121 GGAGAAGAAGAATGGGAGATGGTGCAGAGGAAAGGGATGCAATTCACCCTAAATGGACAA 180
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 155 GGAGAAGAACAATGGGAGATGGTGCAGAGGAAAGGGATGCAATTCACTCTAAATGGACAA 214
Query 181 CCATTCTATGTGAATGGCTTCAACACGTACTGGATGATGACTCTTGCAGCTGACAATTCC 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 215 CCATTCTATGTGAATGGCTTCAACACATACTGGATGATGACTCTTGCAGCTGACAATTCC 274
Query 241 ACGAGAGGCAAAGTGACGGAAGTGTTCCAACAAGCCTCCGCGGTTGGAATGACAGTAGGC 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 275 ACGAGAGGCAAAGTGACGGAAGTGTTCCAACAAGCCTCTGCGGTTGGAATGACGGTAGGC 334
Query 301 AGGACATGGGCTTTCAACGACGGCCAATGGAGAGCTCTCCAGAAATCTCCCTCTGTTTAC 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 335 AGGACATGGGCTTTCAACGATGGCCAATGGAGAGCTCTCCAGAAATCTCCCTCTGTTTAC 394
Query 361 GATGAAGAGGTCTTCAAGGCCCTCGACTTCGTGGTGAGCGAGGCCAGAAAGTACAAGATC 420
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 395 GATGAAGAGGTCTTCAAGGCCCTCGACTTCGTGCTGAGCGAGGCCAGAAAGTACAAAATC 454
Query 421 AGGCTTATACTGTCATTGGTCAACAACTGGGACGCCTATGGCGGCAAAGCTCAGTACGTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 AGGCTTATACTGTCATTGGTCAACAACTGGGACGCCTATGGCGGCAAAGCTCAGTACGTT 514
Query 481 AAATGGGGCAACGCCTCCGGCCTTAATCTCACCTCCGACGACGACTTCTTCACCAACCCC 540
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 515 AAATGGGGAAACGCCTCCGGCCTTAATCTCACTTCCGATGACGACTTCTTCACCAACCCC 574
Query 541 ACCCTCAGAAACTTCTACCAATCCCATGTCCGGACAGTGCTGAATAGAGTCAACACCTTC 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 575 ACCCTCAGAAACTTCTACCAATCCCATGTCCGGACAGTGCTGAATAGAGTGAACACCTTC 634
Query 601 ACAAACATAACTTACAAGAACGACCCCACCATCTTCGCCTGGGAACTCATGAATGAGCCT 660
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 635 ACAAACATAACTTACAAGAACGACCCCACAATCTTCGCCTGGGAACTTATGAATGAGCCT 694
Query 661 CGTTGCCCCTCTGATCCCTCTGGTGACAAACTCCAGTCTTGGATACAAGAAATGGCGGTG 720
||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 695 CGTTGCCCCTCTGATCCTTCCGGCGACAAACTCCAGTCTTGGATACAAGAAATGGCGGTG 754
Query 721 TTTGTGAAGAGCTTAGACGCTAAACATTTGGTGGAGATCGGACTTGAAGGCTTCTATGGT 780
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 755 TTTGTGAAGAGCTTAGACGCTAAACACTTGGTGGAGATCGGACTTGAAGGCTTCTATGGT 814
Query 781 CCCTCTGCCCCTGTGAGAACCAGATTCAATCCCAATCCCTACGCTGCACAAGTCGGAACT 840
||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 815 CCCTCTGCCCCTGCGAGAACCAGATTCAACCCCAACCCCTACGCTGCACAAGTCGGAACT 874
Query 841 GACTTCATCAGAAATAATCAGGTTCTTGGCATCGATTTTGCTTCGGTTCACGTCTATCCA 900
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 875 GACTTCATCAGAAATAATCAGGTTCTTGGCATTGATTTTGCCTCGGTTCACGTCTATCCA 934
Query 901 GATTCCTGGATATCTCCGGCAGTATCAAATTCTTTCCTGGAATTCACTAGCTCTTGGATG 960
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 935 GATTCCTGGATATCTCCGGCAGTATCAAATTCTTTCCTGGAATTCACAAGCTCTTGGATG 994
Query 961 CAAGCTCATGTGGAGGACGCAGAGATGTACTTGGGAATGCCGGTTCTGTTCACAGAGTTT 1020
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 CAAGCTCATGTTGAGGACGCAGAGATGTACTTGGGAATGCCGGTTCTGTTCACAGAGTTT 1054
Query 1021 GGTGTGTCTGCACATGACCCTGGTTTCAACACGTCTTTCCGCGACATGATGTTGAATACG 1080
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1055 GGTGTGTCTGCACATGACCCTGGTTTCAACACGTCTTTCCGTGACATGATGTTGAACACA 1114
Query 1081 GTGTACAAGATGACCCTCAACTCAACAAGGAAAGGAGGGGCTGGTGCCGGGAGTCTGGTC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 GTGTACAAGATGACCCTCAACTCAACAAGGAAAGGAGGGGCTGGTGCCGGGAGTCTGGTC 1174
Query 1141 TGGCAGGTCTTCCCTCAGGGGGCAGAGTTCATGGATGACGGCTATGCGGTTTACCTCACA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 TGGCAGGTCTTCCCTCAGGGGGCAGAGTTCATGGATGACGGCTATGCGGTTTACCTCACA 1234
Query 1201 AGAGCTCACACCGCTTCAAAAATCATATCTCTGCAGTCGAAGCGACTAGCCATCTTCAAC 1260
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1235 AGAGCTCACACAGCTTCAAAAATCATATCTCTGCAGTCAAAGCGACTAGCCATCTTCAAC 1294
Query 1261 TCCTTGTGTAGCTGGAGATGCAGGTGGGGATGCAAGAAAAAGAATCACACTGCTCTTGAT 1320
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1295 TCCTTGTGTAGCTGGAGATGCAGATGGGGATGCAAGAAAAAGAATCAGACTGCTCTTGAT 1354
Query 1321 GCCCTCCTGACGCACGACGAGCTTTAA 1347
|||||||| |||||||||||||||||
Sbjct 1355 GCCCTCCTCTCGCACGACGAGCTTTAA 1381
> AT5G01920.1 | Symbols: STN8 | Protein kinase superfamily protein
| chr5:359107-362904 FORWARD LENGTH=3489
Length=3489
Score = 752 bits (407), Expect = 0.0
Identities = 429/440 (98%), Gaps = 0/440 (0%)
Strand=Plus/Minus
Query 908 GGATATCTCCGGCAGTATCAAATTCTTTCCTGGAATTCACTAGCTCTTGGATGCAAGCTC 967
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2213 GGATATCTCCGGCAGTATCAAATTCTTTCCTGGAATTCACAAGCTCTTGGATGCAAGCTC 2154
Query 968 ATGTGGAGGACGCAGAGATGTACTTGGGAATGCCGGTTCTGTTCACAGAGTTTGGTGTGT 1027
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2153 ATGTTGAGGACGCAGAGATGTACTTGGGAATGCCGGTTCTGTTCACAGAGTTTGGTGTGT 2094
Query 1028 CTGCACATGACCCTGGTTTCAACACGTCTTTCCGCGACATGATGTTGAATACGGTGTACA 1087
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 2093 CTGCACATGACCCTGGTTTCAACACGTCTTTCCGTGACATGATGTTGAACACAGTGTACA 2034
Query 1088 AGATGACCCTCAACTCAACAAGGAAAGGAGGGGCTGGTGCCGGGAGTCTGGTCTGGCAGG 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2033 AGATGACCCTCAACTCAACAAGGAAAGGAGGGGCTGGTGCCGGGAGTCTGGTCTGGCAGG 1974
Query 1148 TCTTCCCTCAGGGGGCAGAGTTCATGGATGACGGCTATGCGGTTTACCTCACAAGAGCTC 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1973 TCTTCCCTCAGGGGGCAGAGTTCATGGATGACGGCTATGCGGTTTACCTCACAAGAGCTC 1914
Query 1208 ACACCGCTTCAAAAATCATATCTCTGCAGTCGAAGCGACTAGCCATCTTCAACTCCTTGT 1267
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1913 ACACAGCTTCAAAAATCATATCTCTGCAGTCAAAGCGACTAGCCATCTTCAACTCCTTGT 1854
Query 1268 GTAGCTGGAGATGCAGGTGGGGATGCAAGAAAAAGAATCACACTGCTCTTGATGCCCTCC 1327
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1853 GTAGCTGGAGATGCAGATGGGGATGCAAGAAAAAGAATCAGACTGCTCTTGATGCCCTCC 1794
Query 1328 TGACGCACGACGAGCTTTAA 1347
| |||||||||||||||||
Sbjct 1793 TCTCGCACGACGAGCTTTAA 1774
Score = 556 bits (301), Expect = 1e-157
Identities = 328/341 (96%), Gaps = 1/341 (0%)
Strand=Plus/Minus
Query 573 GACAGTGCTGAATAGAGTCAACACCTTCACAAACATAACTTACAAGAACGACCCCACCAT 632
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 2646 GACAGTGCTGAATAGAGTGAACACCTTCACAAACATAACTTACAAGAACGACCCCACAAT 2587
Query 633 CTTCGCCTGGGAACTCATGAATGAGCCTCGTTGCCCCTCTGATCCCTCTGGTGACAAACT 692
||||||||||||||| ||||||||||||||||||||||||||||| || || ||||||||
Sbjct 2586 CTTCGCCTGGGAACTTATGAATGAGCCTCGTTGCCCCTCTGATCCTTCCGGCGACAAACT 2527
Query 693 CCAGTCTTGGATACAAGAAATGGCGGTGTTTGTGAAGAGCTTAGACGCTAAACATTTGGT 752
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2526 CCAGTCTTGGATACAAGAAATGGCGGTGTTTGTGAAGAGCTTAGACGCTAAACACTTGGT 2467
Query 753 GGAGATCGGACTTGAAGGCTTCTATGGTCCCTCTGCCCCTGTGAGAACCAGATTCAATCC 812
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 2466 GGAGATCGGACTTGAAGGCTTCTATGGTCCCTCTGCCCCTGCGAGAACCAGATTCAACCC 2407
Query 813 CAATCCCTACGCTGCACAAGTCGGAACTGACTTCATCAGAAATAATCAGGTTCTTGGCAT 872
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2406 CAACCCCTACGCTGCACAAGTCGGAACTGACTTCATCAGAAATAATCAGGTTCTTGGCAT 2347
Query 873 CGATTTTGCTTCGGTTCACGTCTATCCAGATTCCTGGATAT 913
|||||||| ||||||||||||||||||||||||||| |||
Sbjct 2346 TGATTTTGCCTCGGTTCACGTCTATCCAGATTCCTGG-TAT 2307
Score = 477 bits (258), Expect = 1e-133
Identities = 272/279 (97%), Gaps = 0/279 (0%)
Strand=Plus/Minus
Query 101 GGGTTAACTCAGAATCAGTAGGAGAAGAAGAATGGGAGATGGTGCAGAGGAAAGGGATGC 160
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3275 GGGTTAACTCAGAATCGGTAGGAGAAGAACAATGGGAGATGGTGCAGAGGAAAGGGATGC 3216
Query 161 AATTCACCCTAAATGGACAACCATTCTATGTGAATGGCTTCAACACGTACTGGATGATGA 220
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3215 AATTCACTCTAAATGGACAACCATTCTATGTGAATGGCTTCAACACATACTGGATGATGA 3156
Query 221 CTCTTGCAGCTGACAATTCCACGAGAGGCAAAGTGACGGAAGTGTTCCAACAAGCCTCCG 280
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3155 CTCTTGCAGCTGACAATTCCACGAGAGGCAAAGTGACGGAAGTGTTCCAACAAGCCTCTG 3096
Query 281 CGGTTGGAATGACAGTAGGCAGGACATGGGCTTTCAACGACGGCCAATGGAGAGCTCTCC 340
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3095 CGGTTGGAATGACGGTAGGCAGGACATGGGCTTTCAACGATGGCCAATGGAGAGCTCTCC 3036
Query 341 AGAAATCTCCCTCTGTTTACGATGAAGAGGTCTTCAAGG 379
|||||||||||||||||||||||||||||||||||||||
Sbjct 3035 AGAAATCTCCCTCTGTTTACGATGAAGAGGTCTTCAAGG 2997
Score = 337 bits (182), Expect = 2e-91
Identities = 192/197 (97%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 377 AGGCCCTCGACTTCGTGGTGAGCGAGGCCAGAAAGTACAAGATCAGGCTTATACTGTCAT 436
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 2927 AGGCCCTCGACTTCGTGCTGAGCGAGGCCAGAAAGTACAAAATCAGGCTTATACTGTCAT 2868
Query 437 TGGTCAACAACTGGGACGCCTATGGCGGCAAAGCTCAGTACGTTAAATGGGGCAACGCCT 496
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2867 TGGTCAACAACTGGGACGCCTATGGCGGCAAAGCTCAGTACGTTAAATGGGGAAACGCCT 2808
Query 497 CCGGCCTTAATCTCACCTCCGACGACGACTTCTTCACCAACCCCACCCTCAGAAACTTCT 556
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2807 CCGGCCTTAATCTCACTTCCGATGACGACTTCTTCACCAACCCCACCCTCAGAAACTTCT 2748
Query 557 ACCAATCCCATGTCCGG 573
|||||||||||||||||
Sbjct 2747 ACCAATCCCATGTCCGG 2731
Score = 165 bits (89), Expect = 1e-39
Identities = 95/98 (97%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 1 ATGAAGGACCAACTTGGATTCAGAATCGTGCTCTGTTCTGCGATTTTCATAATTCTGACA 60
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 3452 ATGAAGGACCAACTTGGATTCAGAATTGTGCTCTGTTCTGCGGTTTTCATAATTCTGACT 3393
Query 61 CAAAACAGAGCTCTCGCAGACTTGGACAGCGAGTCCCA 98
||||||||||||||||||||||||||||||||||||||
Sbjct 3392 CAAAACAGAGCTCTCGCAGACTTGGACAGCGAGTCCCA 3355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66314919945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5