BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349470
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01340.1 | Symbols: | Mitochondrial substrate carrier famil... 1471 0.0
> AT5G01340.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr5:143055-144720 REVERSE LENGTH=1274
Length=1274
Score = 1471 bits (796), Expect = 0.0
Identities = 886/930 (95%), Gaps = 4/930 (0%)
Strand=Plus/Plus
Query 9 GGCGGCGAAG-ACTGAATCGAGGAACCAGATTCCGCCGTACATGAAAGCAGTCTCAGGTT 67
|||| || || || ||||||| ||| |||||||||||||||||||||||||||||||| |
Sbjct 162 GGCGACG-AGAACGGAATCGAAGAAGCAGATTCCGCCGTACATGAAAGCAGTCTCAGGCT 220
Query 68 CACTAGGCGGAGTCGTCGAGGCTTGTTGTCTCCAACCAATCGACGTAATCAAAACGCGTC 127
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 CACTAGGCGGAGTGGTCGAGGCTTGTTGTCTCCAACCAATCGACGTAATCAAAACGCGTC 280
Query 128 TCCAGCTAGATCGCGTCGGAGCGTACAAAGGAATCGCGCACTGTGGTTC-AACGGTGGTT 186
||||||||||||||||||| || |||||||||||||| ||||||||||| || |||||||
Sbjct 281 TCCAGCTAGATCGCGTCGGCGCTTACAAAGGAATCGCTCACTGTGGTTCGAA-GGTGGTT 339
Query 187 CGCACCGAAGGAGTTCGTGCTCTTTGGAAAGGTTTAACGCCGTTCGCTACTCATCTCACG 246
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 340 CGCACCGAAGGAGTTCGTGCTCTCTGGAAAGGCTTAACACCGTTCGCTACTCATCTCACG 399
Query 247 CTTAAGTACACGCTTCGGATGGGATCCAACGCCATGTTTCAAACCGCGTTTAAGGATTCA 306
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 400 CTTAAGTACACGCTTCGGATGGGATCCAACGCCATGTTTCAAACCGCCTTTAAGGATTCC 459
Query 307 GAGACCGGAAAAGTCAGTAATCGGGGCCGTTTGCTTTCCGGATTCGGCGCCGGCGTTCTT 366
||||||||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||||
Sbjct 460 GAGACCGGAAAGGTCAGCAATCGTGGCCGTTTTCTTTCCGGATTCGGTGCCGGTGTTCTT 519
Query 367 GAAGCTCTCGCCATTGTTACACCCTTTGAGGTGGTGAAAATTAGACTTCAGCAACAGAAA 426
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 520 GAAGCTCTCGCCATTGTTACACCCTTTGAGGTGGTGAAAATTAGACTTCAGCAGCAGAAA 579
Query 427 GGATTAAGTCCTGAGCTTTTCAAGTACAAAGGACCAATACATTGTGCTAGAACCATCGTG 486
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 GGATTGAGTCCTGAGCTTTTCAAGTACAAAGGACCAATACATTGTGCTAGAACCATCGTG 639
Query 487 AGAGAAGAAAGCATACTTGGGTTATGGTCAGGTGCAGCACCAACGGTTATGCGAAACGGC 546
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 640 AGAGAAGAAAGCATACTTGGTTTATGGTCAGGTGCAGCACCGACGGTTATGCGAAACGGA 699
Query 547 ACCAACCAAGCTGTAATGTTCACAGCGAAAAACGCATTTGACATACTTTTGTGGAACAAA 606
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 700 ACCAACCAAGCTGTAATGTTCACAGCGAAAAACGCGTTTGACATACTCTTGTGGAACAAA 759
Query 607 CATGAAGGCGATGGTAAAGTCTTGCAGCCATGGCAGTCCATGATCTCAGGGTTTTTAGCT 666
|| ||||| || |||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 760 CACGAAGGTGACGGTAAAATCTTGCAGCCATGGCAGTCAATGATCTCAGGGTTTTTAGCT 819
Query 667 GGAACCGCAGGTCCGTTCTGCACGGGACCATTTGATGTGGTGAAAACGAGGTTGATGGCT 726
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 820 GGAACCGCAGGTCCGTTCTGCACAGGACCGTTTGATGTGGTGAAAACGAGGTTGATGGCT 879
Query 727 CAGAGCAGAGACAGTGAAGGTGGGATTAGATATAAAGGGATGGTTCATGCCATTAGAACA 786
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 CAGAGCAGAGACAGTGAAGGTGGGATTAGATATAAAGGGATGGTTCATGCCATTAGAACG 939
Query 787 ATTTATGCAGAGGAAGGATTAGTGGCTTTATGGAGAGGGTTATTGCCGAGGCTAATGAGG 846
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 940 ATTTATGCAGAGGAAGGATTAGTGGCCTTATGGAGAGGGTTATTGCCGAGGCTAATGAGG 999
Query 847 ATCCCACCAGGACAAGCCATTATGTGGGCTGTTGCTGATCAAGTCACTGGTCTTTATGAA 906
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 ATTCCTCCAGGACAAGCCATTATGTGGGCTGTTGCTGATCAAGTCACTGGTCTTTATGAG 1059
Query 907 ATGAGATATCTTCGGAATGCTACTTTATAG 936
||||||||||||||||||||| ||||||||
Sbjct 1060 ATGAGATATCTTCGGAATGCTCCTTTATAG 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5