BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349525
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02240.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 202 3e-51
> AT5G02240.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:451423-453157 FORWARD LENGTH=1014
Length=1014
Score = 202 bits (109), Expect = 3e-51
Identities = 121/127 (95%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 262 AGAGCTGGAGGACTTCTAGATAAGGAAGGAGGTGTACGAGAGCTGATAGTTGGTAAAAAC 321
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||
Sbjct 596 AGAGCTGGAGGACTTCTAGATAAGGAAGGCGGTGTACGAGAGCTGCTAGTTGGTAAAGAC 655
Query 322 GATGAGCTACTTCAGACAGACACAAAAACCGTCCCGAGGGCTGATGTTGCGGAAGTCTGC 381
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 656 GATGAGCTACTTCAGACAGACACGAAAACCGTCCCCAGGGCTGATGTTGCAGAAGTCTGC 715
Query 382 ATTCAGG 388
|||||||
Sbjct 716 ATTCAGG 722
Score = 183 bits (99), Expect = 1e-45
Identities = 113/120 (94%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 481 GCATTGCTGTTCGAGGAAGCCAAGAACAAAGCTTTCGATCTCGGCTCAAAGCCAGAGGGA 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GCATTGCTGTTCGAGGAGGCCAAGAACAAAGCTTTCGATCTCGGCTCAAAGCCAGAGGGA 781
Query 541 ACCAGTTCTCCGACTAAAGACTTCAAGGCTCTCTTCTCTCAAGTCACGTCTCGTTTATAA 600
|||||| | || || |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 782 ACCAGTACCCCAACCAAAGACTTCAAGGCTCTCTTCTCTCAAGTCACCTCTCGTTTTTAA 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5