BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349526
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40360.1 | Symbols: | Transducin/WD40 repeat-like superfami... 935 0.0
> AT2G40360.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:16852880-16856690 REVERSE LENGTH=2560
Length=2560
Score = 935 bits (506), Expect = 0.0
Identities = 815/960 (85%), Gaps = 38/960 (4%)
Strand=Plus/Plus
Query 223 GGTTCAACTGATGGATCCGTCCGTATATGGGAAGTGGAAACTGGTAGATGTCTTAAGATC 282
||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||| ||
Sbjct 1376 GGTTCAACTGATGGATCTGTCCGTATGTGGGAAGTGGAGACTGGTAGATGCCTTAAGGTC 1435
Query 283 TGGCAGTTTGATGAAGCTATTAAGTGTGTGGCGTGGAATCCTCTCTCC-GGCTTATCAAT 341
||||||||||| |||||||| | ||||||||| ||||||||||| ||| ||||| || |
Sbjct 1436 TGGCAGTTTGACGAAGCTATCATGTGTGTGGCTTGGAATCCTCTTTCCAGGCTT-CCAGT 1494
Query 342 TGTAGCTGTTGCCATGGGACGAGATTTGGTTATCCTGAACACTGAACTTGACG-CTGATG 400
| |||| ||||||||||||||||||||| || | |||||||||||||||| | ||||||
Sbjct 1495 TTTAGCCGTTGCCATGGGACGAGATTTGTTTTTTCTGAACACTGAACTTG-GGACTGATG 1553
Query 401 AGGAACAGG-AATATATTAAAGAGCTGCTGCACTTAGGAAACGTTATAGAACCAAATGCA 459
||||||||| ||| || ||||||| ||| |||| ||||||| | ||||||| | |||
Sbjct 1554 AGGAACAGGAAAT-TACTAAAGAGAGGCTTCACTCAGGAAACATCCCAGAACCAGACGCA 1612
Query 460 TC---T---GCAATTGCAAGATGGCTTCCAGATGAGAAATATGGAGGGATTATGATTAGA 513
|| | ||||||| || ||||| || |||||| |||||||||||||| ||| |||
Sbjct 1613 TCTGTTGCAGCAATTGTAACCTGGCTACCTGATGAGTTATATGGAGGGATTAAGATAAGA 1672
Query 514 CATTTTAAGAACGTATCGAGTATTGACTGGCATCGTAAGGGAGACTATCTGTCGACAGTC 573
|||||||||| | ||||| |||||||||||||||||| ||||||||||| || |||||
Sbjct 1673 CATTTTAAGAGCATATCGTCTATTGACTGGCATCGTAAAGGAGACTATCTCTCAACAGTG 1732
Query 574 ATGGCATCCGGCGAAACGCGAGGTGTTGTAATT-CATCAAATCTCGAAAA-AGCTTACAC 631
||||||||||| ||||| || || || || ||| || ||| | || |||| || ||||
Sbjct 1733 ATGGCATCCGGGGAAACACGGGGAGTGGT-ATTGCACCAACTGTC-AAAACAGAAAACAC 1790
Query 632 AAAAG--CCC-TTCAAGATCCGTGGACTTCCAGTGACTG--CAGTTTTTCATCCCAGCCG 686
||| | ||| || ||||| |||||||||||||| ||| || |||||||||||||||
Sbjct 1791 AAAGGCTCCCATTTAAGATTCGTGGACTTCCAGT--CTGTACACTTTTTCATCCCAGCCT 1848
Query 687 TTCATACTTGTTCATCGCGACAAGAAAGAACGTGCGTGTTTACAATCTGTTAAAGGTAGA 746
||| ||||| ||| | |||||||||||| ||||||||||||||||||| || ||| ||
Sbjct 1849 TTCTTACTTCTTCGTTGCGACAAGAAAGGACGTGCGTGTTTACAATCTTTTGAAGCCAGG 1908
Query 747 TGA-GCCTGTCAAAAAGCTCGAGACTGGAATGAGGGAAATCTCATCACTGGCGATTCATC 805
|| ||| ||||||||| ||||| ||| |||| |||||||||||| ||||||||||||
Sbjct 1909 CGAGGCC-ACCAAAAAGCTTGAGACAGGATTGAGAGAAATCTCATCAATGGCGATTCATC 1967
Query 806 CTGGTGGTGATAATCTGATAGTAGGAAGTAAAGAAGGGAAGATGTGTTGGTTTGACATGG 865
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1968 CTGGTGGTGATAATCTGATAGTAGGAAGCAAAGAAGGGAAGATGTGTTGGTTTGACATGG 2027
Query 866 ATCTTTCTTC-AAAGCCGTACAAGACTCTCAAGAATCATCCTACGGACATCACTAATGTG 924
|||| ||||| ||| || ||||||||||||||||||||||||| ||||| || ||||||
Sbjct 2028 ATCTATCTTCGAAA-CCATACAAGACTCTCAAGAATCATCCTAAAGACATTACAAATGTG 2086
Query 925 GT-GTTTCACCGTTCGTATCCGTTGTTTGCTTCGTCCTCAGAGGACTCAACAGCTTTTGT 983
| ||| || || || |||||||| |||||||||| ||| ||||| |||||||||| |||
Sbjct 2087 GCAGTT-CATCGATCATATCCGTTATTTGCTTCGTGCTCGGAGGATTCAACAGCTTATGT 2145
Query 984 GTTCCATGGAAAGGTGTATAATGATCTGAAGGAGAATCCTCTGATTGTGCCGTTGGAGAT 1043
|||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 2146 TTTCCATGGAATGGTGTATAATGATCTGAACCAGAATCCTCTGATTGTGCCATTGGAGAT 2205
Query 1044 TCTAAGAGGCCATTCTACTTCTTCCAATGGTGGAGGAGTCTTGGACTGCAAGTTTCATCC 1103
||||||||| | | | |||||| || || |||||||||||||||||||||||||||
Sbjct 2206 TCTAAGAGG---T-C-A-TTCTTCAAAAGG---AGGAGTCTTGGACTGCAAGTTTCATCC 2256
Query 1104 CAGACAACCATGGCTATTCACTGCAGGGGCTGACTCAAATATCAAACTCTATTGCCACTA 1163
|||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 2257 GAGACAACCATGGCTATTCACTGCAGGCGCTGACTCTATTATCAAACTCTATTGCCACTA 2316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57128220210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5