BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349536
Length=2028
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02400.1 | Symbols: PLL2 | pol-like 2 | chr5:513561-515896 F... 3149 0.0
AT3G09400.1 | Symbols: PLL3 | pol-like 3 | chr3:2891235-2893532... 614 1e-174
> AT5G02400.1 | Symbols: PLL2 | pol-like 2 | chr5:513561-515896
FORWARD LENGTH=2025
Length=2025
Score = 3149 bits (1705), Expect = 0.0
Identities = 1929/2036 (95%), Gaps = 19/2036 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAATGGAGTCACCACTTTGACCGGTTGCTGTACAGGAAC-CGTCACCGGAGAAAT 59
|||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 1 ATGGGAAATGGAGTCACCACTTTGACCGGTTGCTGTACAGGAACTC-TCGCCGGAGAAAT 59
Query 60 TTCCCGGCGATACGACTTTTCTCTTGTTCACGACGGTCTTGGCCACTCTTTCTGCTACAT 119
||||||||| |||||| | ||||| |||||||| || |||||||||||||||||||| ||
Sbjct 60 TTCCCGGCGTTACGACGTATCTCTCGTTCACGATGGACTTGGCCACTCTTTCTGCTATAT 119
Query 120 ACGACCGGATCTCACCGGAGTAGTTTTACCGTCTTCGGAGAT-TCCTCTTCGTTCAGAAA 178
||||| |||||| |||||||||| ||||| || ||||| | |||||| || |||| |
Sbjct 120 TCGACCAGATCTCCCCGGAGTAGTATTACCTTCGCCGGAG-TCTCCTCTCCGATCAG-AT 177
Query 179 C-TATCCAAGAAACCACCACAACTTTCCGTTCAATCTCCGGTGCATCGGTCAGCGCAAAT 237
| |||||||| || | | | |||||||||||||||||||| ||||||||||||||||||
Sbjct 178 CATATCCAAG-AA--A-C-C-ACTTTCCGTTCAATCTCCGGCGCATCGGTCAGCGCAAAT 231
Query 238 CCTTCCACCGCGCTCTCCGGAGCTCTATCGTCGGATTCTGACTGTCCGTACAGCTCCGCC 297
||||| || ||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 232 CCTTCAACGGCGCTCTCCGGAGCTCTGTCATCGGATTCTGATTGTCCGTACAGCTCCGCA 291
Query 298 GTCTCCGCCTCCGCATTCGAGAGCTCCGGTAATTTCGCCTCTCTACCACTCCAGCCTGTG 357
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 292 GTCTCCGCCTCCGCATTCGAGAGCTCCGGTAATTTTGCCTCTTTACCACTCCAGCCTGTG 351
Query 358 CCGCGTGGCTCCACGTGGCAATCAGGTCCGATTGTTAACGAGTCGGGTCTCGGGTCAGCT 417
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 352 CCGCGTGGCTCCACGTGGCAATCAGGTCCAATTGTTAACGAGTCGGGTCTCGGGTCAGCT 411
Query 418 CCGTTTGAGCGACGATTCTTATCGGGTCCGATAGAAAGCGGGTTGTATTCGGGTCCGATC 477
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 412 CCGTTTGAGCGACGATTTTTATCGGGTCCGATTGAAAGCGGGTTGTATTCGGGTCCGATT 471
Query 478 GAATCAACgaagaaggcggagaaagagaaaccgaagaagatcagaaaaaaatcaaaatcg 537
||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 472 GAATCAACGAAGAAGACGGAGAAAGAGAAACCGAAGAAGATCAGAAAAAAACCTAAATCG 531
Query 538 aagaagaaTTTTCTCACATTCAAAACACTATTCACGAGTCTAATCTCTAACAAC---AAG 594
||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||
Sbjct 532 AAGAAGAATTTTCTCACATTCAAAACACTATTCGCGAATCTAATCTCTAACAACAATAAA 591
Query 595 TCTCGCTTGAAGAAGAGTGTGATCGAGCCGATCAATGGTTCTGATTCATCAGGTTCCGGT 654
|||||||||||||||||||||||||||||||||| || ||||||||||||| ||| |||
Sbjct 592 CCTCGCTTGAAGAAGAGTGTGATCGAGCCGATCAACGGCTCTGATTCATCAGATTCTGGT 651
Query 655 CGTCATCATCATGAACCTGTGATTACTTCCTCACGAAGCCACGAGAACCCTAAATCTGAT 714
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 652 CGTCTTCATCATGAACCTGTGATTACTTCCTCACGAAGCAACGAGAACCCTAAATCTGAT 711
Query 715 CTTGAAGAAGAAGATGAAAAACAGAGCATCG-ACTCTGTTTTGGATGTTCAATGGGCTCA 773
||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct 712 CTTGAAGAAGAAGATGAAAAACAGAGCAT-GAACTCTGTTTTAGATGTTCAATGGGCTCA 770
Query 774 GGGGAAAGCAGGGGAGGATCGTGTACACGTGGTTGTGTCTGAAGACAACGGATGGGTCTT 833
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 771 GGGGAAAGCAGGGGAGGATCGTGTACACGTGGTTGTATCTGAAGACAACGGATGGGTCTT 830
Query 834 TGTCGGAATCTATGACGGATTCAGTGGTCCAGATGCGCCGGATTATCTCCTCAACAATCT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TGTCGGAATCTATGACGGATTCAGTGGTCCAGATGCGCCGGATTATCTCCTCAACAATCT 890
Query 894 TTACACCGCCGTGCAAAAGGAGCTCAATGGGTTACTTTGGAACGACGAAAAGCTTAGATC 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TTACACCGCCGTGCAAAAGGAGCTCAATGGGTTACTTTGGAACGACGAAAAGCTTAGATC 950
Query 954 TTTTGGAGAAAACGGCGA-GACCAAGATCGGAAAATGTTCCGATGAGGAAGATTCTGATT 1012
||| |||||||||||| | |||||| | |||||||||||| |||||||||||| | || |
Sbjct 951 TTTAGGAGAAAACGGC-ATGACCAAAACCGGAAAATGTTCTGATGAGGAAGATCCCGAGT 1009
Query 1013 CGGGCAAAGAGAATTGTCCTGTGGTGAACAGTGATGATCCAGTTGCTTCCGGTGCAAGAA 1072
| || |||||||||||||| ||| | |||| ||||||| |||||||||||||||||||||
Sbjct 1010 CAGGAAAAGAGAATTGTCCCGTGATAAACAATGATGATGCAGTTGCTTCCGGTGCAAGAA 1069
Query 1073 ACCAAGAGAGGAGTGTGAAATGGAGATGTGAATGGGAGAATAAGTCAAACAACAGGACCA 1132
|||||| || |||| ||||||||||||||||||||||||| |||||||| |||| |||||
Sbjct 1070 ACCAAGCGAAGAGTTTGAAATGGAGATGTGAATGGGAGAAGAAGTCAAATAACAAGACCA 1129
Query 1133 AATCTGATAACAAATGTGATCAGAAAGGATCAAATTCGACGACAACAAACCATAAAGATG 1192
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 AATCTGATAACAGGTGTGATCAGAAAGGATCAAATTCGACGACAACAAACCATAAAGATG 1189
Query 1193 TTCTTAAAGCTCTTTTACTAGCGCTGAGGAAAACCGAAGACGCGTATCTAGAGCTAGCTG 1252
|||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1190 TTCTTAAAGCTCTTTTACAAGCTTTGAGGAAAACCGAAGACGCGTATTTAGAGCTAGCTG 1249
Query 1253 ATCAAATGGTTAAAGAGAATCCAGAATTAGCATTGATGGGTTCTTGTGTTCTCGTGACAT 1312
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1250 ATCAAATGGTTAAAGAGAATCCAGAGTTAGCATTGATGGGGTCTTGTGTTCTCGTGACAT 1309
Query 1313 TGATGAAAGGAGAAGATGTTTACGTGATGAATGTCGGGGATAGCCGAGCGGTTTTAGGCC 1372
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TGATGAAAGGAGAAGACGTTTACGTGATGAATGTCGGGGATAGCCGAGCGGTTTTAGGCC 1369
Query 1373 GGAAACCTAATTTAGCCACCGGGAGAAAGAGGCAAAAGGAGTTGGAGAGAATAAGAGAAG 1432
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1370 GGAAACCTAATTTAGCAACCGGGAGAAAGAGGCAAAAAGAGTTGGAGAGAATAAGAGAAG 1429
Query 1433 ATAGTTCATTAGAAGATAAAGAAATTTTGATGAATGGAGCAATGCGTAATACTTTGGTTC 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 ATAGTTCATTAGAAGATAAAGAAATTTTGATGAATGGAGCAATGCGTAATACTTTGGTTC 1489
Query 1493 CTCTACAACTTAACATGGAACATAGCACAAGAATTGAAGAGGAAGTGAGAAGAATCAAGA 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 CTCTACAACTTAACATGGAACATAGCACAAGAATTGAAGAGGAAGTGAGAAGAATCAAGA 1549
Query 1553 AGGAACATCCTGACGATGATTGTGCAGTAGAGAATGATAGAGTTAAAGGTTATCTTAAGG 1612
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1550 AGGAACATCCTGACGATGATTGTGCCGTAGAGAATGATAGAGTTAAAGGTTATCTTAAGG 1609
Query 1613 TCACTCGTGCATTTGGAGCTGGCTTTCTCAAACAGCCTAAATGGAACGATGCACTTTTAG 1672
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1610 TCACTCGTGCATTTGGAGCTGGCTTTCTCAAACAGCCTAAATGGAACGATGCCCTTTTAG 1669
Query 1673 AGATGTTCAGGATCGATTATATCGGGACATCACCATACATTACATGTTCTCCATCACTAT 1732
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct 1670 AGATGTTCAGGATCGATTATATCGGGACATCACCATATATTACATGTTCACCATCATTAT 1729
Query 1733 GTCATCACAAGCTAACGTCACGTGACAAATTCCTAATCCTATCTTCTGATGGATTGTATG 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 GTCATCACAAGCTAACGTCACGTGACAAATTCCTAATCCTATCTTCTGATGGATTGTATG 1789
Query 1793 AATATTTCTCTAACCAAGAAGCCATTTTCGAGGTTGAATCTTTCATCTCTGCTTTTCCTG 1852
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1790 AATATTTCTCTAACCAAGAAGCCATTTTCGAGGTTGAATCTTTCATCTCTGCTTTCCCTG 1849
Query 1853 AAGGCGATCCAGCTCAACACTTAATCCAAGAAGTCCTCCTTCGTGCTGCCAACAAATTTG 1912
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1850 AAGGCGATCCAGCTCAACACTTAATCCAAGAAGTCCTCCTTCGTGCTGCCAACAAGTTTG 1909
Query 1913 GTATGGATTTTCATGAATTGTTGGAGATACCACAAGGTGATCGTAGGAGGTATCATGATG 1972
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1910 GTATGGATTTTCATGAATTGTTGGAGATACCGCAAGGAGATCGTAGGAGGTATCACGATG 1969
Query 1973 ATGTCTCTGTGATAGTGATCTCACTTGAAGGAAGAATATGGAGATCATCAATGTGA 2028
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1970 ATGTCTCTGTGATAGTGATCTCTCTTGAAGGAAGAATATGGAGATCATCAATGTGA 2025
> AT3G09400.1 | Symbols: PLL3 | pol-like 3 | chr3:2891235-2893532
REVERSE LENGTH=1953
Length=1953
Score = 614 bits (332), Expect = 1e-174
Identities = 645/792 (81%), Gaps = 37/792 (5%)
Strand=Plus/Plus
Query 1251 TGATCAAATGGTTAAAGAGAATCCAGAATTAGCATTGATGGGTTCTTGTGTTCTCGTGAC 1310
||||| |||||||| ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct 1185 TGATCTGATGGTTAATGAGAATCCAGAATTAGCCTTGATGGGATCCTGCGTTCTTGTGAC 1244
Query 1311 ATTGATGAAAGGAGAAGATGTTTACGTGATGAATGTCGGGGATAGCCGAGCGGTT-TTAG 1369
|||||||||||||||||||||||||||||||| || || ||||||||||||||| ||
Sbjct 1245 ATTGATGAAAGGAGAAGATGTTTACGTGATGAGCGTTGGAGATAGCCGAGCGGTTCTT-- 1302
Query 1370 GC-CGGAA-ACCTAATTTAGCCACCGGGAGA--AAGAGGCAAAAGGAG-TTGGAGAGAAT 1424
|| | ||| ||||||| | | | | | | |||| |||||||||| || |||||| |
Sbjct 1303 GCTC-GAAGACCTAATGT--CGA---GAAAATGAAGATGCAAAAGGAGCTT-GAGAGAGT 1355
Query 1425 -AAGAGAAGATAGTTCATTAGAAGATAAAGAAATT-TTGA-TGAATGGAGCAATGCGTAA 1481
|| |||||| ||| |||||| ||| | || | | ||| ||| | | | |
Sbjct 1356 CAA-AGAAGAAAGTCCATTAG-AGACCTTG---TTCATCACCGAA-AGAGGACT--G-AG 1406
Query 1482 TACTT-TGGTTCCTCTACAACTTAACATGGAACATAGCACAAGAATTGAAGAGGAAGTGA 1540
| ||| |||| ||| | || || || | ||||||||||||||| |||||||||||||||
Sbjct 1407 T-CTTCTGGTCCCTGTTCAGCTCAATAAGGAACATAGCACAAGTGTTGAAGAGGAAGTGA 1465
Query 1541 GAAGAATCAAGAAGGAACATCCTGACGATG-ATT-GTGCAGTAGAGAATGATAGAGTTAA 1598
||||||||||||||||||||||||| ||| ||| | | | |||||||| ||||||| ||
Sbjct 1466 GAAGAATCAAGAAGGAACATCCTGATGATATATTAGCG-A-TAGAGAATAATAGAGTGAA 1523
Query 1599 AGGTTATCTTAAGGTCACTCGTGCATTTGGAGCTGGCTTTCTCAAACAGCCTAAATGGAA 1658
||||||||| || ||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct 1524 AGGTTATCTCAAAGTCACTCGTGCATTTGGCGCTGGATTTCTTAAACAGCCAAAATGGAA 1583
Query 1659 CGATGCACTTTTAGAGATGTTCAGGATCGATTATATCGGGACATCACCATACATTACATG 1718
||| || ||| ||||||||||||| || || || |||| ||||| || ||||| || ||
Sbjct 1584 CGAGGCGCTTCTAGAGATGTTCAGAATAGACTACGTCGGAACATCGCCGTACATCACGTG 1643
Query 1719 TTCTCCATCACTATGTCATCACA-AGCTAACGTCACGTGACAAATTCCTAATCCTATCTT 1777
||||| || ||| || || | | || | ||||||||||||||||||||||| || |
Sbjct 1644 CTCTCCGTCGCTACACCACCATAGA-CTCTCATCACGTGACAAATTCCTAATCCTCTCAT 1702
Query 1778 CTGATGGATTGTATGAATATTTCTCTAACCAAGAAGCCATTTTCGAGGTTGAATCTTTCA 1837
| |||||| | || ||||| ||||| ||| | |||||||| ||||||||||| || ||||
Sbjct 1703 CCGATGGACTATACGAATACTTCTCGAACGAGGAAGCCATCTTCGAGGTTGACTCATTCA 1762
Query 1838 TCTCTGCTTTTCCTGAAGGCGATCCAGCTCAACA-CTTAATCCAAGAAGTCCTCCTTCGT 1896
|||| || || |||||||||||||| |||||||| || | || |||||||||||||| |
Sbjct 1763 TCTCAGCCTTCCCTGAAGGCGATCCTGCTCAACATCTCATTC-AAGAAGTCCTCCTTAGA 1821
Query 1897 GCTGCCAACAAATTTGGTATGGATTTTCATGAATTGTTGGAGATACCACAAGGTGATCGT 1956
|||||||| |||| ||||||||| |||||||||||| | |||||||||||||| ||||||
Sbjct 1822 GCTGCCAAGAAATATGGTATGGACTTTCATGAATTGCTAGAGATACCACAAGGAGATCGT 1881
Query 1957 AGGAGGTATCATGATGATGTCTCTGTGATAGTGATCTCACTTGAAGGAAGAATATGGAGA 2016
||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1882 CGGAGGTATCATGACGATGTTTCTGTGATTGTGATTTCACTTGAAGGAAGAATTTGGAGA 1941
Query 2017 TCATCAATGTGA 2028
|| || ||||||
Sbjct 1942 TCTTCCATGTGA 1953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100501491090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5