BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349537
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02410.1 | Symbols: | DIE2/ALG10 family | chr5:517212-51975... 2342 0.0
> AT5G02410.1 | Symbols: | DIE2/ALG10 family | chr5:517212-519756
REVERSE LENGTH=1759
Length=1759
Score = 2342 bits (1268), Expect = 0.0
Identities = 1411/1482 (95%), Gaps = 2/1482 (0%)
Strand=Plus/Plus
Query 1 ATGTCGATTATCATCAATCACATTGTCCCTGAACCGTACATGGACGAGATATTTCATGTT 60
|||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 171 ATGTCGATTATCGTCAATCACATTGTTCCTGAACCCTACATGGACGAGATATTTCATGTG 230
Query 61 CCTCAGGCTCAGCAATACTGCAATGGGAATTTTAGGAGTTGGGATCCAATGATCACTACC 120
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 231 CCTCAAGCTCAGCAATACTGCAATGGGAATTTTAGGAGCTGGGATCCAATGATCACTACC 290
Query 121 CCACCTGGATTGTACTATCTTTCACTAGCACATGTTGCTACTTTGTTTCCAGGAATGTTG 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 291 CCACCTGGATTGTACTATCTTTCACTAGCACATGTTGCTAGTTTGTTTCCAGGAATGTTG 350
Query 181 TTGATGAAAAATAC-TACTCAGTCCTTTCCAGAAGCTTGTTCGACATCTGTCCTGCGGTC 239
|||||| ||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 351 TTGATGGAAAATACAT-CTCAGTCCTTTTCAGAAGCTTGTTCGACATCTGTCCTGCGGTC 409
Query 240 TACAAATGCTGTTTTTGCAGTATTGTGTGGTGTTTTAGTGTATGAGATAATCAGATTCTT 299
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 410 TACAAATGCTGTTTCTGCAGTATTGTGTGGTGTTTTAGTGTATGAGATAATAAGATTCTT 469
Query 300 GGGGCCGAATCTCAGTGATAGAAAGGCGACTTTTATGGCCTTAGTCATGTCGCTTTACCC 359
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 470 GGGGCCGAATCTTAGTGATAGAAAAGCGACTTTTATGGCGTTAGTCATGTCGCTTTACCC 529
Query 360 TCTCCATTGGTTCTTCACTTTCCTCTACTATACAGATGTTGCGTCTCTAACCGCAGTTCT 419
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 530 TCTCCATTGGTTCTTCACTTTCCTATACTATACAGATGTTGCGTCCCTAACCGCAGTTCT 589
Query 420 TGCCATGTACCTTGCTTGTTTGAAAAGAAGATATATGCTGAGTGCATTGTTTGGCACTTT 479
||||||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||
Sbjct 590 TGCCATGTACCTTACTTGTTTGAAAAGACGATATGTGCTCAGTGCATTGTTTGGCACTTT 649
Query 480 AGCAGTATCTATCCGACAAACAAATGTAGTCTGGATGCTTTTCGTTACTTGCTCAGGTGT 539
|||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 650 AGCAGTTTTTATCCGACAAACAAATGTAGTCTGGATGCTTTTCGTTGCTTGCTCAGGTAT 709
Query 540 TATAGACTTCACTCTTGACTCGTCTAGGCAAAAAGGAAAACAAAAAGTAAATCAAGAATT 599
| |||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| |
Sbjct 710 TCTAGACTTCACCCTTGACTCGTCTAAGCAAAAAGGAAAACAAGAAGTAAATCAAGAACT 769
Query 600 GCATCAGTCTAGTGATAGGAAAGGAACATCTCTCAGATCAAATCTTAGAAAAAGAAAATC 659
||||||||||||| ||| ||||||| || || | ||||||||||||||||||||||||||
Sbjct 770 GCATCAGTCTAGTAATAAGAAAGGAGCAACTTTGAGATCAAATCTTAGAAAAAGAAAATC 829
Query 660 TGATATCAGCTCAGACACTTCAGACCGTTTTAACCACGGTCAAACTGTTTCTTCAACAGA 719
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 830 TGATATCAGCTCAGACACTTCAGACCCTTTTAACCACGGTCAAACTGTTCCTTCAACAGA 889
Query 720 GGATACTTCAGGCTTACTGTATGATGTTTATACTGTAATCTCAACATCTTGGAATATGAA 779
||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 890 GGATACTTCAGACTTAGTGTATGATATTTATACTGTAATCTCAACATCTTGGAATCTGAA 949
Query 780 GTGGAGGATTTTAATCAAGTTTAGCCCTTTTATCTTTGTTGTGGTGGCGTTTGGTATATT 839
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 950 GTGGAGGATTTTGATCAAGTTTAGCCCTTTTATCTTTGTTGTGGTGGCGTTTGGTATTTT 1009
Query 840 TATCCTCTGGAACGGGGGTATAGTTCTCGGTGCGAAAGAGGCTCATGTAGTTTCACTGCA 899
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1010 TATCCTCTGGAACGGGGGTATAGTCCTCGGTGCAAAAGAGGCTCATGTAGTTTCACTGCA 1069
Query 900 TTTTGCGCAGATAATGTATTTTAGCCTCGTTTCTGCTCTTTTCACTGCTCCCCTACACTT 959
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1070 TTTTGCGCAGATAATGTATTTTAGTCTCGTTTCTGCTCTTTTCACTGCTCCCCTACACTT 1129
Query 960 CTCAGTAAATCAACTGAGAAATCAGTTCCAAAAGCTCCATAGAAATTGGCCATTAAGCCT 1019
||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||
Sbjct 1130 CTCAGTAAATCAACTGAGACATCAGTTCCATCAGCTCCATAGAAATTGGTCATTAAGCCT 1189
Query 1020 TCTACCAACTCTCGTGGCTCTGGTAGCCGGATTTGTCTCTGTACACTTTTTCAGCTTGGC 1079
| ||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1190 TATACTAACTCTTGTGGCTCTAGTAGCCGGATTTGTCTCTGTACACTTTTTCAGCTTGGC 1249
Query 1080 TCATCCATATCTTCTCGCCGATAATCGCCATTATCCTTTCTACCTATGGAGAAAAATAAT 1139
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1250 TCATCCATATCTTCTTGCTGATAATCGCCATTATCCTTTCTACCTATGGAGAAAAATTAT 1309
Query 1140 CAATGCGCATTGGTTAATGAAGTACATGTTAGTCCCGGTTTACGTCTATTCATGGTTCTC 1199
||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1310 CAATGCGCATTGGTTAATGAAGTACATATTAGTCCCGGTATACGTCTATTCCTGGTTCTC 1369
Query 1200 AATCCTAACTTTATTAGCGAAAACTCGAAGGAAGATCTGGGTATTGGTCTATTTCTTAGC 1259
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 1370 AATCCTAACTTTATTAGCGAAAACTCGAAGGCAGACCTGGATATTGGTCTATTTCTTAGC 1429
Query 1260 TACATGCGGTGTTCTTGTTCCCACACCATTGATCGAGTTCAGATATTACACCATTCCGTT 1319
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1430 TACATGCGGTGTTCTTGTTCCTACTCCATTGATCGAGTTCAGATATTACACCATTCCGTT 1489
Query 1320 TTACCTCTTCATGCTTCACTCATGTGTCAGAAGCAGCGGCTTCGCCACTTGGCTTCTCAT 1379
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1490 TTACCTCTTCATGCTTCACTCCTGTGTCAGAAGCAGCAGCTTCGCCACTTGGCTTCTCAT 1549
Query 1380 CGGAACGATTTTTGTCTCTATTAATGTGTTTACAATGGCAATGTTCTTGTTTAGACCTTT 1439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1550 CGGAACGATTTTTGTCTCTATCAATGTGTTTACAATGGCAATGTTCTTGTTTAGACCGTT 1609
Query 1440 TAAGTGGAGCCATGAAGATGGTGTCCAGAGGTTTATATGGTA 1481
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 TAAGTGGAGCCATGAAGATGGTGTCCAGAGGTTTATATGGTA 1651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73091993520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5