BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349542
Length=327
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02450.1 | Symbols: | Ribosomal protein L36e family protein... 555 1e-157
AT2G37600.1 | Symbols: | Ribosomal protein L36e family protein... 233 6e-61
> AT5G02450.1 | Symbols: | Ribosomal protein L36e family protein
| chr5:533106-534656 FORWARD LENGTH=684
Length=684
Score = 555 bits (300), Expect = 1e-157
Identities = 318/327 (97%), Gaps = 0/327 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGCGACAGGCTTATTCGTGGGGATAAACAAAGGACACGTTGTTACCAAGCGCGAG 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 96 ATGGTGGCGACAGGCTTATTCGTGGGGCTAAACAAAGGACACGTTGTTACCAAACGCGAG 155
Query 61 CAACCTCCTCGCCCTAACAACAGAAAAGGGAAAACAAGCAAAAGGACTCTTTTTATCAGG 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 156 CAACCTCCTCGCCCTAACAACAGAAAAGGGAAAACAAGCAAAAGGACTATTTTTATCAGG 215
Query 121 AGTCTCATCAAGGAAGTTGCGGGTCAAGCTCCCTATGAGAAGAGGATCACTGAGCTTTTG 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 AATCTCATCAAGGAAGTTGCGGGTCAAGCTCCCTATGAGAAGAGGATCACTGAGCTTTTG 275
Query 181 AAGGTCGGTAAAGACAAGAGAGCTCTTAAAGTTGCCAAGAGAAAGTTGGGAACTCACAAG 240
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 276 AAGGTTGGTAAAGACAAGAGAGCTCTTAAAGTTGCCAAGCGAAAGTTGGGAACTCACAAG 335
Query 241 AGAGCTAAGCGAAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGGTCTGGTGGT 300
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 336 AGAGCTAAACGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGGTCTGGTGGT 395
Query 301 GGTGGTGCATCCGAGAAGAAGAAGTGA 327
| |||||||||||||||||||||||||
Sbjct 396 GCTGGTGCATCCGAGAAGAAGAAGTGA 422
> AT2G37600.1 | Symbols: | Ribosomal protein L36e family protein
| chr2:15774245-15775374 REVERSE LENGTH=577
Length=577
Score = 233 bits (126), Expect = 6e-61
Identities = 262/325 (81%), Gaps = 19/325 (6%)
Strand=Plus/Plus
Query 9 GACAGGCTTATTCGTGGGGA-TAAACAAAGGACACGTTGTTACCAAG-CGCGAGCAACCT 66
||| || || ||||| ||| | |||||||||||||| || ||| || || |||| | ||
Sbjct 91 GACCGGTTTGTTCGT-TGGATTGAACAAAGGACACGTCGTCACC-AGACGTGAGCTAGCT 148
Query 67 CCTCG-CCCTAACAAC-AGAAAAGGGAAAACAAGCAAAAGGACTC-TTTTTATCAGGAGT 123
||||| ||| || | | ||||||||||| ||||| ||||| | | || || || |
Sbjct 149 CCTCGTCCC-AA-TTCTCGCAAAGGGAAAACGAGCAAGAGGAC-CATATTCATAAGAAAA 205
Query 124 CTCATCAAGGAAGTTGCGGGTCAA--GCTCCCTATGAGAAGAGGATCACTGAGCTTTTGA 181
|| || | |||||| || || || ||||| ||||||||||| |||||||||||| | |
Sbjct 206 CTGATTAGGGAAGTAGCTGG--AATGGCTCCTTATGAGAAGAGAATCACTGAGCTTCTCA 263
Query 182 AGGTCGGTAAAGACAAGAGAGCTCTTAAAGTTGCCAAGAGAAAGTTGGGAACTCACAAGA 241
|||| || ||||||||| | |||||||| ||||| ||||| |||||||| ||||||||||
Sbjct 264 AGGTTGGGAAAGACAAGCGTGCTCTTAAGGTTGCTAAGAGGAAGTTGGGTACTCACAAGA 323
Query 242 GAGCTAAGCGAAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGGTCTGGTGGTG 301
|||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 324 GAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGGTCTCTTGGTG 383
Query 302 GTGGTGCAT-C--C-GAGAAGAAGA 322
||| ||| | | | ||||||||||
Sbjct 384 GTGCTGC-TGCTGCTGAGAAGAAGA 407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15231127947
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5