BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg349548

Length=744
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02510.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   865    0.0  


> AT5G02510.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1); 
Has 166 Blast hits to 166 proteins in 31 species: Archae 
- 0; Bacteria - 4; Metazoa - 3; Fungi - 0; Plants - 142; 
Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | 
chr5:560135-560860 FORWARD LENGTH=540
Length=540

 Score =  865 bits (468),  Expect = 0.0
 Identities = 518/542 (96%), Gaps = 3/542 (1%)
 Strand=Plus/Plus

Query  203  TGAGCAACAAGAATTACGTGTTTGAAGAGGCAAAAGAGAGTTTAAGCTCAATTTTGTTCA  262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2    TGAGCAACAAGAATTACGTGTTTGAAGAGGCAAAAGAGAGTTTAAGCTCAATTTTGTTCA  61

Query  263  ATGGGGATTCGGATAGAACAGAAGCTGGCTCATTTGATGGATCTGTGGGAAGTTGGAAGG  322
            |||||||||| |||||||||||||||||||  |||||||||||||||| ||||||||| |
Sbjct  62   ATGGGGATTCTGATAGAACAGAAGCTGGCTTTTTTGATGGATCTGTGGAAAGTTGGAACG  121

Query  323  ATGAGGATATGATCGATGGAGCTAAATGGGTTGATAGACTTGTATCCGAGATGGCAAAAG  382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  122  ATGAGGATATGATCGATGGAGCTAAATGGGTTGATAGACTTGTATCCGAGATGACAAAAG  181

Query  383  CAATAAACATTGATGATATGAGGCGACGTGTCGCAGTGATCTTAGAAGCTTTAGAGAGAA  442
            | |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct  182  CGATAAACATTGATGACATGAGGCGACGTGTTGCAGTGATCTTAGAAGCTTTAGAGAGTA  241

Query  443  TCATAAAAAAGAACACCAATGCCTCGAACAAGCTTGAATATGTGTCGTTGAAGGAGAGTC  502
            ||||||| ||||||||||| |||||||| ||||||||||||| |||| ||||||||||||
Sbjct  242  TCATAAAGAAGAACACCAACGCCTCGAAGAAGCTTGAATATGCGTCGATGAAGGAGAGTC  301

Query  503  TACAGAGTTTGATCAATGATAACCAAATCTTGAAGCGGGTCATTGCGAATCAACACCAGC  562
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct  302  TACAGAGTTTGATCAATGATAACCAAATATTGAAGCGGGTCATTGCGAATCAACATCAGC  361

Query  563  GTAGCTCTGAAAACGAAGAGAAGGCCAAACAAGTACAGCATTTGAAAGGCGTGGTGGGGC  622
            |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct  362  GTAGCTCTGAAAACGAAGAGAAGGCCAAACAAGTACTGCATTTGAGAGGCGTGGTGGGGC  421

Query  623  AATACCAAGAACAAGTTCATAAGCTAGAGCTTAGCAACTACGCCATGAAACTCCATCTTC  682
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  422  AGTACCAAGAACAAGTTCATAAGCTAGAGCTTAGCAACTACGCCATGAAACTCCATCTTC  481

Query  683  AAAGGTCACAACAACAACAACAGACTTCTTTCTCAGGGAATTTGCCTCCAGACGTCTACT  742
            |||||||||||||||||||   ||||||||||||||||||||||||||||||| ||||||
Sbjct  482  AAAGGTCACAACAACAACA---GACTTCTTTCTCAGGGAATTTGCCTCCAGACATCTACT  538

Query  743  AA  744
            ||
Sbjct  539  AA  540



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36118351693


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5