BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349549
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02520.1 | Symbols: | CONTAINS InterPro DOMAIN/s: SANT asso... 785 0.0
> AT5G02520.1 | Symbols: | CONTAINS InterPro DOMAIN/s: SANT associated
(InterPro:IPR015216); BEST Arabidopsis thaliana protein
match is: kinase interacting family protein (TAIR:AT1G58210.1);
Has 842 Blast hits to 736 proteins in 154 species:
Archae - 2; Bacteria - 99; Metazoa - 236; Fungi - 52; Plants
- 90; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink).
| chr5:561325-564142 FORWARD LENGTH=2099
Length=2099
Score = 785 bits (425), Expect = 0.0
Identities = 566/634 (89%), Gaps = 10/634 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGAACCAAATCCCGACGACGATGGTTCGAAGTCGTATTTCCAGAAAACGGTGGTG 60
||| |||||||||||| |||||| |||||||| ||||||| |||||||||||||||||||
Sbjct 1 ATGACGGAACCAAATCTCGACGAAGATGGTTCCAAGTCGTCTTTCCAGAAAACGGTGGTG 60
Query 61 CTGAGAGATTGGTGGTTGGTTAAATGTCCAAAGGAATTCGACGGCAAACGATTTGGTGTT 120
|||||||||||||||||| | ||||| |||||||||||||| || |||| ||||||||||
Sbjct 61 CTGAGAGATTGGTGGTTGATAAAATGCCCAAAGGAATTCGAAGGGAAACAATTTGGTGTT 120
Query 121 GCTGGATTCGAAGATTCCGTCGAGACTCGAGCAATGCGTGTGTTTAAATCTTCCCCAATC 180
|||||||||||||| ||||||||||| |||||||||||||||||| |||||| ||||||
Sbjct 121 GCTGGATTCGAAGAGTCCGTCGAGACAAGAGCAATGCGTGTGTTTACATCTTCACCAATC 180
Query 181 ATCAGAGCTTTGGATGTTTTCACACTCTTAGCATCTGATGGAATCTATATAACTCTCCGT 240
| || ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 181 ACCAAAGCTTTGGATGTTTTCACACTCTTAGCATCTGATGGAATCTATATCACTCTCAGA 240
Query 241 GGTTTTCTTAACAAAGAACGCGTTGTTAATAATGGATTTACCCCTGAGATTTCTCGTGAA 300
|||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||
Sbjct 241 GGTTTTCTTAACAAAGAACGCGTTCTTAAAAATGGATTTAACCCTGAGATTTCTCGTGAA 300
Query 301 TTCATCTTCGGATTTCCTCCTTGTTGGGAACGATTTTGTAACAGTTGCTTTCTTGGAGAC 360
||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 301 TTCATCTTCGGGTTTCCTCCTTGTTGGGAACGAGTTTGTAACAGTTGCTTTGAAGGAGAC 360
Query 361 TCTTGTGGCACTGATATTAATACTGTCCCTTCGACAATCGATAAAGCTTTTCCTCCCATT 420
|||| |||||||||| ||||||| ||||||||||| ||||| ||||||| ||||||||||
Sbjct 361 TCTTTTGGCACTGATGTTAATACCGTCCCTTCGACTATCGAGAAAGCTTGTCCTCCCATT 420
Query 421 TTATCACCATGTAAGTACTCGAACGGGAATGT-AGAGGATTATCCATCTGAGAGCAGAGA 479
|||||||| ||||||||||| ||| ||||| | | ||||| ||||| |||||||||||||
Sbjct 421 TTATCACCTTGTAAGTACTCTAACAGGAATCTTA-AGGATAATCCAGCTGAGAGCAGAGA 479
Query 480 TAAAAGCAGTGTGACTGAGACGGATATCACAGAGATTAATGATAAAGATGGTTC-GAGAG 538
||||||| |||||||||||| ||||| |||||||||||||||||| |||||| | |||
Sbjct 480 GAAAAGCAATGTGACTGAGACTGATATTGCAGAGATTAATGATAAAGGTGGTTCTG-GAG 538
Query 539 CAAGAGCTaaaaaaaCTGCAAGGAGAAAGTCTCTTCATCTAAGTGAAGAGGAGGAAAGGA 598
|||||| || ||||||||||||||||| |||||||||||| | || | | ||||||
Sbjct 539 CAAGAGATATAAAAACTGCAAGGAGAAGGTCTCTTCATCT--GCAAATA--A--AAAGGA 592
Query 599 AACTTGAATCGAGTAATGTCCAGAACACTACTAA 632
||||||||||||||| |||| ||| ||| ||||
Sbjct 593 TACTTGAATCGAGTAAAGTCCGGAAGACTGCTAA 626
Score = 597 bits (323), Expect = 1e-169
Identities = 360/378 (95%), Gaps = 2/378 (1%)
Strand=Plus/Plus
Query 1131 GAAAGGAAAATCAAGGAAAAGTGAGAAGACCCTTCAAAGTGACAGCAATGTGGTAGAGCC 1190
|||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1404 GAAAGGAAAATCAAAGAAAAGTGAGAAGACCCTTCAAAGTAACAGCAATGTTGTAGAGCC 1463
Query 1191 TATGAATCA-GTCGAGGTCTCAAGTTGAAGAAGCTGAAGAAAACTTGTCATGGGAAAAAA 1249
||||||||| || |||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1464 TATGAATCATTTC-AGGTCTGAAGCTGAAGAAGCTGAAGAAAACTTGTCATGGGAAAAAA 1522
Query 1250 TAAAGAGGAAAATCGACTTTGATGTGGAGGTAACACCGGAAAAAGAAGTGAAGAAGCAGA 1309
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1523 TAAAGAGGAAAATCGACTTTGATGTGGAGGTAACACCGGAAAAAAAAGTGAAGCAGCAGA 1582
Query 1310 AGACCAATGCGGCGTCTACTGATTCAGTGGGACAGAAACGGTCAAGATCAGGAAGGGTGC 1369
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1583 AGACCAATGCGGCGTCTACTGATTCATTGGGACAGAAACGGTCAAGATCAGGAAGGGTGC 1642
Query 1370 TTGTATCATCACTAGAGTTTTGGCGCAACCAAATTCCTGTTTATGATATGGATCGGAACC 1429
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1643 TTGTGTCATCACTAGAGTTTTGGCGTAACCAAATTCCTGTTTATGATATGGATCGGAACC 1702
Query 1430 TTATCCAAGTAAAGGATGGGAGTGAGACTAACTCCACTCCATCTAAAGGAAAAGGATCGA 1489
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1703 TTATCCAAGTAAAGGATGGTAGTGAGACTAACTCCGCTCCATCTAAAGGAAAAGGATCGG 1762
Query 1490 ATTCTCAAAAGCCAAGAA 1507
|||||| ||||| |||||
Sbjct 1763 ATTCTCGAAAGCGAAGAA 1780
Score = 486 bits (263), Expect = 2e-136
Identities = 348/389 (89%), Gaps = 6/389 (2%)
Strand=Plus/Plus
Query 629 CTAAGAGCGGTGATGTAGAAAAAGATGGATATGTGGCTATCAATAATGAAGACAATGAAT 688
||||| ||||||||||||||| |||||||| || || ||||||||||||||||| |||||
Sbjct 662 CTAAGCGCGGTGATGTAGAAAGAGATGGATGTGAGGTTATCAATAATGAAGACAGTGAAT 721
Query 689 GGAAACTCGATGGCAGTG-AGCTCCAGAAT-TGTACTAATGATGGAGTTCATGGTAGTGA 746
|||||||||||| |||| || |||||||| | | ||||||||||| | ||||||||||
Sbjct 722 GGAAACTCGATGAAAGTGAAG-TCCAGAATCT-TTGTAATGATGGAGATAATGGTAGTGA 779
Query 747 AGGTTTAATTAAGGCTAAGAGCAGTGATGTAGAAAAAGATGAGTGCGAAGTTATCGATAA 806
|||||| ||||||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 780 AGGTTTCATTAAGGCTAAGAGCAGTGATGTAGAAAAAGATAAGAGCGAAGCTATCGATAA 839
Query 807 TAATGTGATATCGCCAGCGGTTGGATGTGGTATTAAGTATACCGGTGCAGATAATGTTGA 866
| |||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 840 TGATGTGATATCTCCAGCGGTTGGAAGTGGTATTAAGCATACCGGTGCAGATAATGTTGA 899
Query 867 TAAAGTAACAAGTGCGAGTGCTACTGGAGAATCACTGACTCCAGAACAGCGAAAA-GGTG 925
|||||| |||||||| |||||||||||||||||||| ||| | ||||||| |||| |||
Sbjct 900 TAAAGTGACAAGTGCAAGTGCTACTGGAGAATCACTTACTTCGGAACAGC-AAAATGGTT 958
Query 926 TACTGGGAACGACAGCATCTCCACAATGCCTGCTTAAAGATTTAGACAAGAGTAGCAAAT 985
|||| | ||| |||||||||||||| | |||||||||||| |||| |||||||||||||
Sbjct 959 TACTTGTAACAACAGCATCTCCACATTCCCTGCTTAAAGACTTAGCCAAGAGTAGCAAAC 1018
Query 986 CTGAAAAGAAAGGAATATCGAAGAAAAGT 1014
||||||||||||||||||| |||||||||
Sbjct 1019 CTGAAAAGAAAGGAATATCCAAGAAAAGT 1047
Score = 139 bits (75), Expect = 7e-32
Identities = 88/94 (94%), Gaps = 1/94 (1%)
Strand=Plus/Plus
Query 1011 AAGTAAGAATGCTACTAAAGAATCACTGCCGTCAGAACAGCGAAAAGGTAGAGTGAAGGT 1070
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1317 AAGTAAGAATGCTACTAAAGAATCACTGACGTCAGTACAGCGAAAAGGTAGAGTGAAGGT 1376
Query 1071 AACAAAGGCATCTCAAGATCCCCTGTCGAA-GGA 1103
| | ||||||| |||||||||||||||||| |||
Sbjct 1377 ATCGAAGGCATTTCAAGATCCCCTGTCGAAAGGA 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74598009870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5