BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg349578

Length=1191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02910.1 | Symbols:  | F-box/RNI-like superfamily protein | ...   185    7e-46


> AT5G02910.1 | Symbols:  | F-box/RNI-like superfamily protein 
| chr5:677087-679043 FORWARD LENGTH=1546
Length=1546

 Score =  185 bits (100),  Expect = 7e-46
 Identities = 171/205 (83%), Gaps = 6/205 (3%)
 Strand=Plus/Plus

Query  227  GGATTCACTT-TGTTAATAGTTGGATCGAATTCGCCATTTCTCACAACGCAGAGAAGCTT  285
            ||||| | || ||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct  299  GGATTGA-TTCTGTTAATGGCTGCATCGAATTCGCCATTTCTCACAACGCAGAGAAGCTT  357

Query  286  TCACTGGATTTTCGTGATGCCCGTGTTAGGGATTACAAGTTTCCAGGTTTCTTCTACACC  345
            |||||||| | |||||||   ||||| ||  ||||||||||||| | |||||||||||||
Sbjct  358  TCACTGGAGTCTCGTGATTATCGTGTCAGAAATTACAAGTTTCCTGATTTCTTCTACACC  417

Query  346  AATTCCTCTGTTAAGCAACCCTT-GATC-AGTTCGGGACCTGCTGAGTTGATTCCGAGTT  403
            ||||| ||||| ||||||| ||| | || | | | ||| ||| | | |||||||| || |
Sbjct  418  AATTCATCTGTGAAGCAACTCTTTG-TCGACT-CTGGATCTGTTCATTTGATTCCCAGAT  475

Query  404  GCACCGTTTCTTGGACATCTCTAAA  428
            |||| || |||||||| ||||||||
Sbjct  476  GCACTGTCTCTTGGACTTCTCTAAA  500



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 58483634925


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5