BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg349578 Length=1191 Score E Sequences producing significant alignments: (Bits) Value AT5G02910.1 | Symbols: | F-box/RNI-like superfamily protein | ... 185 7e-46 > AT5G02910.1 | Symbols: | F-box/RNI-like superfamily protein | chr5:677087-679043 FORWARD LENGTH=1546 Length=1546 Score = 185 bits (100), Expect = 7e-46 Identities = 171/205 (83%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 227 GGATTCACTT-TGTTAATAGTTGGATCGAATTCGCCATTTCTCACAACGCAGAGAAGCTT 285 ||||| | || ||||||| | || |||||||||||||||||||||||||||||||||||| Sbjct 299 GGATTGA-TTCTGTTAATGGCTGCATCGAATTCGCCATTTCTCACAACGCAGAGAAGCTT 357 Query 286 TCACTGGATTTTCGTGATGCCCGTGTTAGGGATTACAAGTTTCCAGGTTTCTTCTACACC 345 |||||||| | ||||||| ||||| || ||||||||||||| | ||||||||||||| Sbjct 358 TCACTGGAGTCTCGTGATTATCGTGTCAGAAATTACAAGTTTCCTGATTTCTTCTACACC 417 Query 346 AATTCCTCTGTTAAGCAACCCTT-GATC-AGTTCGGGACCTGCTGAGTTGATTCCGAGTT 403 ||||| ||||| ||||||| ||| | || | | | ||| ||| | | |||||||| || | Sbjct 418 AATTCATCTGTGAAGCAACTCTTTG-TCGACT-CTGGATCTGTTCATTTGATTCCCAGAT 475 Query 404 GCACCGTTTCTTGGACATCTCTAAA 428 |||| || |||||||| |||||||| Sbjct 476 GCACTGTCTCTTGGACTTCTCTAAA 500 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58483634925 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5