BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349579
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02930.1 | Symbols: | F-box/RNI-like superfamily protein | ... 638 0.0
AT5G02920.1 | Symbols: | F-box/RNI-like superfamily protein | ... 396 4e-109
AT3G18150.1 | Symbols: | RNI-like superfamily protein | chr3:6... 100 3e-20
> AT5G02930.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:682577-684480 FORWARD LENGTH=1410
Length=1410
Score = 638 bits (345), Expect = 0.0
Identities = 549/641 (86%), Gaps = 40/641 (6%)
Strand=Plus/Plus
Query 530 ATTTGAGT-CCC-GGATGCACCGTTTCTTGGACATCACTAAAGAACTTGTCTTTAAGCTC 587
|||||| | ||| || |||| || ||||||||||||||||||||| ||||||| | |
Sbjct 476 ATTTGA-TGCCCAGG-TGCATGGTGTCTTGGACATCACTAAAGAACCTGTCTTTGACCGA 533
Query 588 TTGTA-AACTCTCTGATGATTCCTTACTTAAGATTCTGTCTGGTTGTCCAATCCTGGAAA 646
||||| || | |||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct 534 TTGTACAA-TGTCTGATGAATCCTTTCTTGAGATTCTGTCTGGTTGTCCAATCCTGGAAA 592
Query 647 CCTTGAGTTTGAAGTTTTGTATCTCACTCATGTATGTTGATCTGAGTAAATCGCTGCGCT 706
||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||||
Sbjct 593 GCTTGAGTTTGAAGTTTTGTATGTCACTCAAGTATCTTAATCTGAGTAAATCGCTGCGCT 652
Query 707 TGACAAGATTGGAGATAGAACGCCGCA-ACCCT-T-TTC---CA-GAA--C---CAATGC 754
|||||||||||||||||||| |||| | ||| | ||| || || | | ||||
Sbjct 653 TGACAAGATTGGAGATAGAA---CGCATATCCTATATTCGAGCACCAATGCTGTCTATGC 709
Query 755 AGATTGTGGCGCCACATGTCCGTTATTTGAGATTGAGAGACTCTGAGGCACAATGCACCT 814
|||| ||||||||| || ||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 710 AGATCGTGGCGCCATATATCCATTATTTGAGATTGAGAGACTCTGAGGCACACTGCA-CT 768
Query 815 TAC-TTGATGTCTCTTCTTTAACAGAAGCTAATGTAGACTTTACCGATTTTC-ATCCTAG 872
| | ||||||||||||||||||||||||||||||| ||| ||| | | |||| |||||||
Sbjct 769 TTCGTTGATGTCTCTTCTTTAACAGAAGCTAATGTCGACGTTAGC-ACTTTCCATCCTAG 827
Query 873 AACCCT-TTATCATGGTTTTGAGCCCTTAGACCCT-AGTGTTCTTCTAGTCACGGTGCAA 930
|||| | |||||||| |||||| |||||||||||| | || ||||||||||| |||||||
Sbjct 828 AACC-TGTTATCATGATTTTGACCCCTTAGACCCTCA-TGATCTTCTAGTCATGGTGCAA 885
Query 931 ACGATGCTAGAA-CAGTTTCAGAACGTAGAGAAGCTTACTTTGGGGGTTAACTTT-CTTC 988
|| |||||| || | ||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 886 ACAATGCTAAAAAC-GTTTCAGAAAGTAGAGAAGCTTACTTTGGGGGTTAA-TTTACTTC 943
Query 989 AGATGTTATCTCTTTCCAAGATCCCTAGTCTTCCATTACCGACGCTCAAAG-TCAAAAAT 1047
|||||||||| |||||||||||||||||||||||||| |||| ||| |||| |||||| |
Sbjct 944 AGATGTTATCACTTTCCAAGATCCCTAGTCTTCCATTGCCGATGCT-AAAGGTCAAAACT 1002
Query 1048 CTGACTCTTGAAACAAGGATTATGCCAA-CTGTGGTTCCTGGTATAACAAGGCTATTACA 1106
||||||||||||||| |||||| || | |||||||||||||||| |||| || ||||
Sbjct 1003 TTGACTCTTGAAACAATGATTAT-CCGATCTGTGGTTCCTGGTATTGCAAGACTGCTACA 1061
Query 1107 AAACTCACCTGGATTAGAGAAGTTAACAGTACTTTACACAA 1147
||||| |||||||||| ||||| ||||||| || ||||||
Sbjct 1062 AAACTTACCTGGATTAAAGAAGATAACAGT--TT-ACACAA 1099
Score = 392 bits (212), Expect = 5e-108
Identities = 290/326 (89%), Gaps = 12/326 (4%)
Strand=Plus/Plus
Query 96 TGGTATAGACAT-AATCAGCGATCTACCCGACGCGGTTCTCCAACATATCTTCTCCTATA 154
|||| ||||| | ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 75 TGGTGTAGAC-TCAATCAGCGATCTACCCGACGCTGTTCTCCAACATATCTTCTCCTATA 133
Query 155 TTCCGACAAAGTTTGCTATCAGAACATCCGTCTTGTCAAAACGATGGAGACATGTATGGT 214
|||||||| |||| || |||||||| || |||||||| ||||||||||||||||||||||
Sbjct 134 TTCCGACAGAGTTGGCGATCAGAACCTCTGTCTTGTCCAAACGATGGAGACATGTATGGT 193
Query 215 CCGAGACACCTCATCTCTCCTTTGGTTGGTTC-AGTGGTTCCCCTAAATTGATAAACAAA 273
|||||||||||||||||||||||| ||| || || | ||||||||||||||||||||||
Sbjct 194 CCGAGACACCTCATCTCTCCTTTGAATGGCTCAAG-GTTTCCCCTAAATTGATAAACAAA 252
Query 274 ACCCTAGCCAGCTACTCGGCTTCCAAAATCACGAGTTTCCATCTCTGTACCCGTTACTGC 333
||||||||||||||| |||||||||| |||| |||||| |||||||||||||||||| ||
Sbjct 253 ACCCTAGCCAGCTACACGGCTTCCAAGATCAAGAGTTTTCATCTCTGTACCCGTTACAGC 312
Query 334 TACAAGGCT-A-AC-CA---TGTTAATAGCTCGATCGAGTTTGCAATGTCTCACAACGTT 387
||| |||| | || || |||||| ||||||||||||||||||||||||||||||||
Sbjct 313 TACGAGGCAGACACTCACCATGTTAACAGCTCGATCGAGTTTGCAATGTCTCACAACGTG 372
Query 388 GA-GAATCTTTCTCTGACGATCAGTA 412
|| || |||||||||| || || |||
Sbjct 373 GATGA-TCTTTCTCTGGCGTTCCGTA 397
> AT5G02920.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:680541-681777 FORWARD LENGTH=1118
Length=1118
Score = 396 bits (214), Expect = 4e-109
Identities = 356/419 (85%), Gaps = 32/419 (8%)
Strand=Plus/Plus
Query 1 ATGGAAGAGGAATACCACGCCACCGTCGCTGTAGGAAACCCTAGCGACCGTTTTGATCGT 60
|||||||||||| ||||||||||| | |||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGAAGAGGAAGACCACGCCACCTTTGCTGTAGGAAACCCTAGCCACCGTTTTGATCGT 60
Query 61 CCTCTCGAAATTAGACGATCAAGTGATTCAAGCGATGGTATAGACATAATCAGCGATCTA 120
||||| ||| |||||||||| | | || | | | ||||||| |||||
Sbjct 61 CCTCT---AATCAGACGATCAA--G--T-----GA---T-T---C--AATCAGCAATCTA 99
Query 121 CCCGACGCGGTTCTCCAACATATCTTCTCCTATATT-CC--GACAAAGTTT-GCT-ATCA 175
||||||| |||| || |||||| |||||| |||| || ||| || ||| | | ||||
Sbjct 100 CCCGACGAAATTCTTCACCATATCCTCTCCTTTATTCCCGAGACCAA-TTTAG-TGATCA 157
Query 176 GAACATCCGTCTTGTCAAAACGATGGAGACATGTATGGTCCGAGACACCTCATCTCTCCT 235
|||| || |||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 158 GAACCTCGGTCTTGTCGAAACGATGGAGACATGTATGGTCCAAGACACCTCATCTCTCCT 217
Query 236 TTGGTTGG-TTCAGTGG-TTCCCCTAAATTGATAAACAAAACCCTAGCCAGCTACTCGGC 293
||| ||| || | ||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 218 TTGAATGGCTT-A-TGGTTTCCCCTAAATTGATAAACAAAACCCTAGCCAGCTACACGGC 275
Query 294 TTCCAAAATCACGAGTTTCCATCTCTGTACCCGTTACTGCTACAAGGCTAACCATGTTAA 353
||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||| |
Sbjct 276 TTCCAAAATCACGAGTTTCCATCTCTGTACCAGTTACAGCTACGAGGCTGGCCATGTTCA 335
Query 354 TAGCTCGATCGAGTTTGCAATGTCTCACAACGTTGAGAATCTTTCTCTGACGATCAGTA 412
||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||
Sbjct 336 TAGCTCGATCGAGTTTGCAATGTCTCACAACGTGGATAATCTTTCTCTGGCGTTCAGTA 394
Score = 350 bits (189), Expect = 3e-95
Identities = 296/345 (86%), Gaps = 18/345 (5%)
Strand=Plus/Plus
Query 1082 TTCCTGGTATAACAAGGCTATTACAAAACTCACCTGGATTAGAGAAGTTAACAGTACTTT 1141
||||||||||| |||||||| | |||||||||||||||||| |||||||||||| |||
Sbjct 766 TTCCTGGTATAGCAAGGCTACTGCAAAACTCACCTGGATTAAAGAAGTTAACAG---TTT 822
Query 1142 ACACAATTGACGA-GTGCAGCATC-TTACTGTGGGAGTGTGTCAACAGCTACTTGAAG-- 1197
|||||||||| | |||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 823 ACACAATTGA-AATGTGCAGCA-CGTTACTGTGGGATTGTGTCAACAGCTACTTGAAGAA 880
Query 1198 --AA----GCA-ATTGAAAGATGTGGCCTTTCTCTTTC-CGTGGGAGTATGAAGTTATAA 1249
|| | | ||||||||||| | ||||| | | || ||||||||||||| |||
Sbjct 881 ACAACGTTGGAGATTGAAAGATGAGATCTTTC-CAACCTCGCAGGAGTATGAAGTTGTAA 939
Query 1250 AGCCGAAAGTCATGGCTTCGTTCATGGAACTTTTGCTGGCAAACACAAAAACGCTAGAGA 1309
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 940 AGCCGAAAGTCATGGCTTCGTTCATGGAACTTTTGCTGGCAAACACAAATACGTTAGAGA 999
Query 1310 CATTGGTTTTACATTTGGGAAGTTGCATTAATAGATCAAGATTTGAAGAGCTGTCTCAAA 1369
| |||||| |||| ||||||||||||||| ||||||||||||| ||||||||| ||| |
Sbjct 1000 CTTTGGTTGTACAGTTGGGAAGTTGCATTGCTAGATCAAGATTTAAAGAGCTGTTTCAGA 1059
Query 1370 TCGCTCTCACGCTTTCTCATAACAATAAGGTCTCAATTCTGCTCA 1414
|||| |||||||||||||| |||| |||||||||||| ||||||
Sbjct 1060 TCGCACTCACGCTTTCTCACGACAAAAAGGTCTCAATTATGCTCA 1104
Score = 274 bits (148), Expect = 2e-72
Identities = 248/294 (84%), Gaps = 15/294 (5%)
Strand=Plus/Plus
Query 531 TTTGAGTCCCGGATGCACCGTTTCTTGGACATCACTAAAGAACTTGTCTTTAAGCTC-TT 589
||||| |||| | |||| || |||||||| ||||||| | |||||||||| | | | |
Sbjct 474 TTTGACTCCCAGTTGCATTGTGTCTTGGACCTCACTAAGGGACTTGTCTTTGA-CCCGGT 532
Query 590 GTAAACTCTCTGATGATTCCTTACTTAAGATTCTGTCTGGTTGTCCAATCCTGGAAACCT 649
|||| ||||| ||| | ||||| ||||||||||||||||||||||||||||| |||| ||
Sbjct 533 GTAATCTCTCGGATAAATCCTTTCTTAAGATTCTGTCTGGTTGTCCAATCCTCGAAAGCT 592
Query 650 TGAGTTTGAAGTTTTGT-ATCTCACTCATGTATGTTGATCTGAGTAAATCGCTGCGCTTG 708
||||||||||||||||| | ||||||| |||| |||||||||||||||| |||||||||
Sbjct 593 TGAGTTTGAAGTTTTGTGA-GTCACTCAAGTATCTTGATCTGAGTAAATCACTGCGCTTG 651
Query 709 ACAAGATTGGAGATAGAACGCCGCAACCC-TTTTCCAGAACCAATGCAG---AT-----T 759
||||||||||||||||||||| | | || ||||| ||||||||||||| || |
Sbjct 652 ACAAGATTGGAGATAGAACGCAG-ATCCTGTTTTCGAGAACCAATGCAGTCTATGCAGAT 710
Query 760 -GTGGCGCCACATGTCCGTTATTTGAGATTGAGAGACTCTGAGGCACAATGCAC 812
|||||||||||| | | |||||||||||||||||||||||||||||| |||||
Sbjct 711 CGTGGCGCCACATATTCATTATTTGAGATTGAGAGACTCTGAGGCACACTGCAC 764
> AT3G18150.1 | Symbols: | RNI-like superfamily protein | chr3:6217929-6219500
FORWARD LENGTH=1371
Length=1371
Score = 100 bits (54), Expect = 3e-20
Identities = 81/94 (86%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 133 CTCCAACATATCTTCTCCTATATTCCGA-CAAAGTTTGCTATCAGAACATCCGTCTTGTC 191
|||||||||||| |||||| |||||||| |||| | || |||| ||| ||| |||||||
Sbjct 121 CTCCAACATATCCTCTCCTTTATTCCGACCAAA-CTCGCCATCACAACTTCCCTCTTGTC 179
Query 192 AAAACGATGGAGACATGTATGGTCCGAGACACCT 225
||||||||||||||||||||||| || ||||||
Sbjct 180 AAAACGATGGAGACATGTATGGTGTGATACACCT 213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70531765725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5