BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349589
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03010.1 | Symbols: | Galactose oxidase/kelch repeat superf... 307 1e-82
AT5G03020.1 | Symbols: | Galactose oxidase/kelch repeat superf... 265 7e-70
AT5G03000.1 | Symbols: | Galactose oxidase/kelch repeat superf... 241 1e-62
AT5G02980.1 | Symbols: | Galactose oxidase/kelch repeat superf... 119 6e-26
AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superf... 100 2e-20
> AT5G03010.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:704584-705538 FORWARD LENGTH=955
Length=955
Score = 307 bits (166), Expect = 1e-82
Identities = 322/391 (82%), Gaps = 36/391 (9%)
Strand=Plus/Plus
Query 651 AGAGATTGACAAGGTGTCGTG-C-G-TATTGTCGGTT-TCTGATGGGAATCTATTTTGGC 706
||||||||||||||||||||| | | |||| | || || |||||||| ||||||||||
Sbjct 415 AGAGATTGACAAGGTGTCGTGCCTGATATT-T---TTATCCGATGGGAAGCTATTTTGGC 470
Query 707 GTGAAACGAAGGATGGTTTTGAGTGGTCCAGTG-T-TA-TGGGAG-TCGA--AG-AAGTG 759
||||||| ||| | ||||||||| ||| |||| | || |||||| | || || |||||
Sbjct 471 GTGAAACAAAGCAAGGTTTTGAGAGGTGTAGTGTTATATTGGGAGAT-GATGAGCAAGTG 529
Query 760 TCCTC---T--A-TTATTTCTGTGGCGAACGCCGGCGCAGAAGGAAGAGTGACAGTTTGG 813
||||| | | || |||| ||||| ||||||| || || |||||||||||||||||||
Sbjct 530 TCCTCTTATCAACTTGTTTCGGTGGCAAACGCCGCCGGAGGAGGAAGAGTGACAGTTTGG 589
Query 814 TGGAAGTC---GTTGATA--T-TGGA---GTT-AGT-G-AGTGTGAC-TGAGGAATGTGA 860
|||||||| ||| | | | |||| || ||| | | || ||| || ||||||| |
Sbjct 590 TGGAAGTCGGGGTTAAAAGTTCTGGATCTCTTAAGTGGCACTGAGACTTG-GGAATGTTA 648
Query 861 AACGAAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGTTTAACAGAGCTTTGGGG 920
|| || ||| |||||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 649 CACAAATATTCGGTGTGCAGAGATTTCGTTTGAGAGAAGAGGTTTAAGAGAGCTTTGGGG 708
Query 921 ATTCGTTGATTGGTCTAAAGAGGTGTTTGCCGTTGATGGATATGACTCTACTTACGATTT 980
||||||||| ||||||| |||||||||| ||||||||||||||||| ||||||||||||
Sbjct 709 ATTCGTTGAATGGTCTAGAGAGGTGTTTACCGTTGATGGATATGACGATACTTACGATTT 768
Query 981 CTTTTTAAATTCTGCTATTGTGACTTATTGA 1011
|||||||||||||||||||||||| ||||||
Sbjct 769 CTTTTTAAATTCTGCTATTGTGACCTATTGA 799
> AT5G03020.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:707257-708396 FORWARD LENGTH=1140
Length=1140
Score = 265 bits (143), Expect = 7e-70
Identities = 305/379 (80%), Gaps = 27/379 (7%)
Strand=Plus/Plus
Query 654 GATTGACAAGGTGTCGTGCGTATTGTCGGTTTCTGATGGGAATCTATTTTGGCGTGAA-A 712
|||| | |||||||||||| || | | ||||| |||||||| |||| |||||||||| |
Sbjct 678 GATTAATAAGGTGTCGTGCCTACTATATGTTTCCGATGGGAAGCTATATTGGCGTGAAGA 737
Query 713 CGAAGGATGGTTTTGAGTG--GTCCA-GTGTTATGGGAGTCGAAGAAGTGTCCTCT-AT- 767
| ||||| ||||||||||| || | || |||| ||| | | |||| ||||||| ||
Sbjct 738 C-AAGGAAGGTTTTGAGTGCCGT-AAGGT-TTAT-GGACTTGCAGAACAGTCCTCTAATC 793
Query 768 TATTTC---T-GTGGCGAACGCCGGC-GCAGAAGGAAGAGTGACAGTTTGGTGGAAGTCG 822
| |||| | ||||| ||| ||||| || | ||||||||||||||||||||||||||||
Sbjct 794 TGTTTCGTGTGGTGGCAAACTCCGGCGGC-GGAGGAAGAGTGACAGTTTGGTGGAAGTCG 852
Query 823 TTGATA-----TTG-GAGTTAG--TGAGTG-TGACTGAGGAATGTGAAACGAAGATTTGG 873
||| | ||| ||||| | || || |||||||||| |||||||| |||||||||
Sbjct 853 ATGACAAAAGGTTGCGAGTTTGACTGTCTGCTGACTGAGGAGTGTGAAACCAAGATTTGG 912
Query 874 TGTGCAGAGATTTCGTTTGAGAGACGCGGTTTAACAGAGCTTTGGGGATTCGTTGATTGG 933
||||||||||||||| |||||||| | ||||||| ||||||| ||||||| ||||| |||
Sbjct 913 TGTGCAGAGATTTCGCTTGAGAGAAGAGGTTTAAGAGAGCTTCGGGGATTTGTTGAATGG 972
Query 934 TCTAAAGAGGTGTTTGCCGTTGATGGATATGACTCTACTTACGATTTCTTTTTA-AATTC 992
||||||||||| ||| || ||||| ||| ||||| || |||||||||| ||| | ||| |
Sbjct 973 TCTAAAGAGGTTTTTACCATTGATAGATGTGACTATATTTACGATTTCATTTCACAATAC 1032
Query 993 TGCTATTGTGACTTATTGA 1011
| || |||||||||||||
Sbjct 1033 -GTTACTGTGACTTATTGA 1050
> AT5G03000.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:703268-704437 FORWARD LENGTH=1065
Length=1065
Score = 241 bits (130), Expect = 1e-62
Identities = 262/324 (81%), Gaps = 15/324 (5%)
Strand=Plus/Plus
Query 11 CTCGAGAATCTGCAGCCGCTGATGTAATCGACGGTAGGATCTACGTGATTGGAGGCCCTT 70
|||||| ||||||||||||||||| |||||||||| |||||||||| ||||||| |
Sbjct 533 CTCGAGTTTCTGCAGCCGCTGATGTCATCGACGGTAAGATCTACGTGGTTGGAGGATCAA 592
Query 71 GGTCCGACAATATCGAGGATTGGGGAGAGGCTTATGATCCAAAGACCCAAACTTGGAAGA 130
||| | |||||||| |||||||||| | || ||||||| |||||||||| ||| ||
Sbjct 593 AGTCTAAAAATATCGACAATTGGGGAGAAGTTTTTGATCCAGAGACCCAAACGTGGGAGC 652
Query 131 CATTATTGCCCACAACACTTGATCTCACCACTCAAAAGAGTGTGGTTCCAGGTAGATTGG 190
|| |||| ||||||||| |||||||||||||||||||||||||| ||||||||| |||||
Sbjct 653 CAATATTTCCCACAACAGTTGATCTCACCACTCAAAAGAGTGTGTTTCCAGGTAAATTGG 712
Query 191 TTATGGGAGGGAAAGTTTATATTTATGATGACATTAGTTATATGCCTGAGCTTCGCTTGG 250
||||||| ||||||| || || | | ||| | | | | || || || ||||
Sbjct 713 TTATGGGTGGGAAAG-TT-TA-TGA-CATG-GA-T-G-GGT-TG--AAAG-TTAACTTGA 760
Query 251 AGGAGAATAATGTTTGCTTGGTAGAGATAGACAACATGATGTGCCAAGTATCGGTTTACA 310
| |||| | | |||| ||||||||||||||||||||||||||||| |||| |||| ||
Sbjct 761 ACCTGAAT-A-G-TTGCGTGGTAGAGATAGACAACATGATGTGCCAAATATCAGTTTGCA 817
Query 311 AAGGGATATTACTTTGGTATGATT 334
|||||||| || ||||||||||||
Sbjct 818 AAGGGATACTAGTTTGGTATGATT 841
Score = 189 bits (102), Expect = 5e-47
Identities = 139/156 (89%), Gaps = 5/156 (3%)
Strand=Plus/Plus
Query 446 AGTCGGTGGTGTTTGGCCTTCTAGGTCTCAATTATTGGACTAAGGAATGTAAAAAGGAGA 505
||||| ||||||||| || |||||||||| |||||||||||||| |||||| |||||
Sbjct 866 AGTCGATGGTGTTTGACCGTCTAGGTCTC---GATTGGACTAAGGAAGGTAAAACGGAGA 922
Query 506 TTTGGTGTGCAGAGATATCGTTGGAGAGACGAGGTTCAGGAGAGCTTTGGGGATTCGTCG 565
|||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 923 TTTGGTGTGCCGAGATATCGTTGGAGAGACGCGGTTTTGGAGAGCTTTGGGGATTCGTCG 982
Query 566 AATGGTCAAAGAATGTGGTTACTT-TCGACGGATGT 600
||||||||||||| ||| |||||| | |||||||||
Sbjct 983 AATGGTCAAAGAAAGTGTTTACTTAT-GACGGATGT 1017
> AT5G02980.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:697993-699000 FORWARD LENGTH=1008
Length=1008
Score = 119 bits (64), Expect = 6e-26
Identities = 134/166 (81%), Gaps = 12/166 (7%)
Strand=Plus/Plus
Query 852 GGAATGTGAAACGA-AGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGTTTAACAG 910
||||| ||| || | |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 849 GGAATTTGATAC-AGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGTTTAAAAG 907
Query 911 AGCTTTGGGGATTCGTTGATTGGTCTA-AAGAGGTGTTTGCC-GTTGATGGATATGACTC 968
||||||||||||| || || ||||||| || || |||| | || | |||| ||| ||
Sbjct 908 AGCTTTGGGGATTTGTAGAATGGTCTAGAAAAG-TGTTCACATGTA-AGGGATGTGATTC 965
Query 969 TACTTACG-ATTTCTTTT-TAAATTCTG-CTATTGTGACTTATTGA 1011
| || ||| |||| | || | |||||| | ||||||| ||||||
Sbjct 966 TCCT-ACGGATTT-TGTTATGGATTCTGTCC-TTGTGACATATTGA 1008
> AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:16916072-16917184 FORWARD LENGTH=1113
Length=1113
Score = 100 bits (54), Expect = 2e-20
Identities = 84/97 (87%), Gaps = 8/97 (8%)
Strand=Plus/Plus
Query 846 GACTGAGGAATGTGAAACGA-AGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGT- 903
|||| |||||||| |||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 930 GACTAAGGAATGTAAAAC-AGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGTG 988
Query 904 TT--AACAGAGCTTTGGGGATTCGTTGATTGGTCTAA 938
|| || || | |||| ||||| ||||| ||||||||
Sbjct 989 TTGGAA-AG-G-TTTGTGGATTTGTTGAATGGTCTAA 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5