BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349596
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03110.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1160 0.0
> AT5G03110.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
plasma membrane; BEST Arabidopsis thaliana protein match is:
protamine P1 family protein (TAIR:AT2G37100.1); Has 81 Blast
hits to 73 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr5:730292-731448 FORWARD
LENGTH=1157
Length=1157
Score = 1160 bits (628), Expect = 0.0
Identities = 785/858 (91%), Gaps = 22/858 (3%)
Strand=Plus/Plus
Query 1 ATGATGATTTCTCGGAGACCCGTTTCAAGTCCGGGTCGGGTCGAGAAATATCCACCGCCT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 55 ATGATGATTTCTCGGAGACCCGTTTCAAGTCCGGGTCGGGTAGAGAAATATCCACCGCCT 114
Query 61 TTTATGGGTTTTTTGAGGAGCAAAAGTAACGGCGGAAGCACAAGTAGAAGTAGAAGCCGA 120
|||||||| |||||||| || || || ||||||||||| ||||| || |||||||| |||
Sbjct 115 TTTATGGGGTTTTTGAGAAGTAAGAGCAACGGCGGAAGTACAAGCAGGAGTAGAAGTCGA 174
Query 121 AGCAGAGGAAGGTCACGCGCGAGTCCTCTATTT-GTTCGCCGGAATAAATCCGCTGCGGC 179
|||||||||||||||||||| |||||||| ||| |||||||||||||||||||| |||||
Sbjct 175 AGCAGAGGAAGGTCACGCGCTAGTCCTCT-TTTCGTTCGCCGGAATAAATCCGCGGCGGC 233
Query 180 GGTGACTCAAGAACCGTCGTCTCCGAAGGTTACTTGCATGGGTCAAGTCCGGGTCAACCG 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GGTGGCTCAAGAACCGTCGTCTCCGAAGGTTACTTGCATGGGTCAAGTCCGGGTCAACCG 293
Query 240 ATCGAAGCCCAAAATTAAAACCGAATCTCTAGAAAACCCGACCCGACGACGATGTAAGTG 299
||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||
Sbjct 294 ATCGAAGCCCAAAATTAAACCCGAATCTCGAGATAACCCGACCCGACGACGATGTGAGTG 353
Query 300 GATCCGAAACGCGGCGTTTTATAACAAATTCGCCGGGAAAATCAAAACGTTGTCGTTTTG 359
| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 354 GCTCCGAAACGCGTCGTTTTATAACAAATTCGCCGGGAAAATCAAAACGATGACGTTTTG 413
Query 360 GCCTAAATGGCGATTGTTTTCGTTTTCGTGTTCTTGTCGGAAATTGAAGGAGAAAGATTC 419
|||||||||| || | | ||||||||||||| |||||||||| |||||||||||||||||
Sbjct 414 GCCTAAATGGAGACTCTGTTCGTTTTCGTGTGCTTGTCGGAATTTGAAGGAGAAAGATTC 473
Query 420 TCCGAGAAGCCAATTAGATCGTCCGGCAACGGAATCAGTCagagaaatcaaagaagaaat 479
||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 474 TCCGAGAAGTCAATTAGATCATCCGACAACGGAATCAGTCAGAGAAATCAAAGAAGAAAT 533
Query 480 cgaagaagaagaaggggaaaagTTT-GAAATCCCTAAATTATTTGTGTCTCCGGCTACTA 538
||||| || |||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 534 CGAAG--GA-GAAG---AAAA-TTTCGAAATCCCTAAATTATTTGTGTCTCCGGCTACTA 586
Query 539 CGCCGCCGGTAAACGCTCTGTTGTTGACGAGAAGCAGATCTGCACCGTATAGATCGTCGT 598
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 CTCCGCCTATAAACGCTCTGTTGTTGACGAGAAGCAGATCTGCACCGTATAGATCGTCGT 646
Query 599 CGTTGGCTTTCAGATTCTGGGAAGAGAATAACCAACGCGAAATTGAATCACAGCAAAATG 658
||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||
Sbjct 647 CGTTGGCTTTCAGATTCTGGGAAGAAAATAACCAACGAGAAGTTGAATCACAGCAAAATG 706
Query 659 TGAGATCGGAGAAAACTGAATCGGAAGTTCCCACCGAGAAAATCAATGGTGTTT-ACGAT 717
||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||
Sbjct 707 TGAGATCGGAGAAAACTGATTCGGAAGTTCCCATCGAGAAAATCAATGGT-TTTCACGAG 765
Query 718 ----A--ATGTTGATAGAGATGAAGAAGGATTAACAGA-GTTAGGGTCTGTACGA-AGGC 769
| ||||||| ||||||||||||| ||| || || |||| | | |||||| || |
Sbjct 766 CCGGAGTATGTTGACAGAGATGAAGAAGAATTCAC-GAAGTTAAGATTTGTACGGCAG-C 823
Query 770 CAGCGTTGACAAGGAGCAAATCAGAGCCGGCGAGGATCGGTGAGAAGATGATGGTGTTGC 829
| | |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 824 CGGTGTTGACAAGGAGCAAATCGGAGCCGGCGAGGATCGGCGAGAAGATGATGGTGTTGC 883
Query 830 TTCCGGATGAAGAAGAAG 847
|||| |||||||||||||
Sbjct 884 TTCCCGATGAAGAAGAAG 901
Score = 60.2 bits (32), Expect = 3e-08
Identities = 35/36 (97%), Gaps = 1/36 (3%)
Strand=Plus/Plus
Query 848 ATA-TAGAGGAAACAAATTTGTATAAAGATTTGTAA 882
||| ||||||||||||||||||||||||||||||||
Sbjct 1023 ATAGTAGAGGAAACAAATTTGTATAAAGATTTGTAA 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43050663979
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5