BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349604
Length=507
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03220.1 | Symbols: | Mediator complex, subunit Med7 | chr5... 832 0.0
AT5G03500.1 | Symbols: | Mediator complex, subunit Med7 | chr5... 802 0.0
> AT5G03220.1 | Symbols: | Mediator complex, subunit Med7 | chr5:767489-768857
REVERSE LENGTH=736
Length=736
Score = 832 bits (450), Expect = 0.0
Identities = 488/507 (96%), Gaps = 0/507 (0%)
Strand=Plus/Plus
Query 1 ATGGCTACAGCTACGTATCCACCTCCTCCACCGTATTACAGACTCTACAAGGATTACTCA 60
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 102 ATGGCTACAGCTACGTATCCGCCTCCTCCACCATATTACAGACTCTACAAGGATTACTCA 161
Query 61 GAAAACCCTAATTCTGCTCCTGAACCTCCTCCTCCCATTGAAGGCACCTACGTTTGTTTC 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 162 GAAAACCCTAATTCTGCTCCTGAACCTCCTCCTCCGATTGAAGGCACCTACGTCTGTTTT 221
Query 121 GGAGGCAACTATACTACTGAAGATGTTCTTCCAAGCTTAGAAGAACAAGGAGTGCCTCAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 GGAGGCAACTATACTACTGAAGATGTTCTTCCAAGCTTAGAAGAACAAGGAGTGCCTCAA 281
Query 181 CTTTATCCCAAAGATTCTAATGTTGATTATAAGAAGGAACTCAGGTCACTGAATAGAGAA 240
||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct 282 CTTTATCCCAAAGATTCTAATCTTGATTACAAGAATGAACTCAGGTCACTGAATAGAGAA 341
Query 241 CTACAGTTACATATATTGGAGCTTGCTGATGTTCTTGTTGATAGACCTTCTCAATATGCA 300
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 342 CTACAGTTACATATATTGGAGCTTGCTGATGTTCTTGTTGACAGACCTTCTCAATATGCG 401
Query 301 AAGAGGATTGGTGAAATTTCTTCAATCTTCAAGAATTTGCATCACCTTCTCAATTCCTTG 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 402 AAGAGGATTGGTGAAATTTCTTCTATCTTCAAGAATTTGCATCACCTTCTCAATTCCTTG 461
Query 361 AGACCTCACCAAGCGAGAGCAACGCTTATTCACATTATGGAACTTCAAATTCAACGGAGG 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 462 AGGCCTCACCAAGCGAGAGCAACGCTTATTCACATTATGGAACTTCAAATTCAACAGAGG 521
Query 421 AAACAAGCTGTGGAGGACATTAAGAGGAGAAGAGAAGAAGCACAGCGACTTCTTAAGGAT 480
|||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 522 AAACAAGCTGTGGAAGACATTAAAAGAAGAAGAGAAGAAGCACAGCGACTTCTAAAGGAT 581
Query 481 GCTTACGTCACTTTAGACGGTCAATAG 507
|||||| |||||||||| |||||||||
Sbjct 582 GCTTACCTCACTTTAGATGGTCAATAG 608
> AT5G03500.1 | Symbols: | Mediator complex, subunit Med7 | chr5:876521-878336
REVERSE LENGTH=885
Length=885
Score = 802 bits (434), Expect = 0.0
Identities = 483/507 (95%), Gaps = 2/507 (0%)
Strand=Plus/Plus
Query 1 ATGGCTACAGCTACGTATCCACCTCCTCCACCGTATTACAGACTCTACAAGGATTACTCA 60
|||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 227 ATGGCTACAGCTACATATCCACCTCCTCCTCCATATTACAGACTCTACAAGGATTTCTCA 286
Query 61 GAAAACCCTAATTCTGCTCCTGAACCTCCTCCTCCCATTGAAGGCACCTACGTTTGTTTC 120
|||||| || ||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 287 GAAAACACTGATTCTGCTCCTGAACCTCCTCCTCCGATTGAAGGCACCTACGTCTGTTTT 346
Query 121 GGAGGCAACTATACTACTGAAGATGTTCTTCCAAGCTTAGAAGAACAAGGAGTGCCTCAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 GGAGGCAACTATACTACTGAAGATGTTCTTCCAAGCTTAGAAGAACAAGGAGTGCCTCAA 406
Query 181 CTTTATCCCAAAGATTCTAATGTTGATTATAAGAAGGAACTCAGGTCACTGAATAGAGAA 240
|||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 407 CTTTATCCAAAAGATTCTAATCTTGATTACAAGAAGGAACTCAGGTCACTGAATAGAGAA 466
Query 241 CTACAGTTACATATATTGGAGCTTGCTGATGTTCTTGTTGATAGACCTTCTCAATATGCA 300
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 467 CTACAGTTACATATATTGGAGCTTGCTGATGTTCTTGTTGACAGACCTTCTCAATATGCG 526
Query 301 AAGAGGATTGGTGAAATTTCTTCAATCTTCAAGAATTTGCATCACCTTCTCAATTCCTTG 360
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 527 AAGAGAATTGGTGAAATTTCTTCAATCTTCAAGAACTTGCATCACCTTCTCAATTCCTTG 586
Query 361 AGACCTCACCAAGCGAGAGCAACGCTTATTCACATTATGGAACTTCAAATTCAACGGAGG 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 587 AGGCCTCACCAAGCGAGAGCAACGCTTATTCACATTATGGAACTTCAAATTCAACAGAGG 646
Query 421 AAACAAGCTGTGGAGGACATTAAGAGGAGAAGAGAAGAAGCACA-GCGACTTCTTAAGGA 479
|||||||||||||| |||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 647 AAACAAGCTGTGGAAGACATTAAGAGGAGGAGAGAAGAAGCACAAG-GACTTCTTAAGGA 705
Query 480 TGCTTACGTCACTTTAGACGGTCAATA 506
||||| |||||||||||| ||||||||
Sbjct 706 TGCTTTCGTCACTTTAGATGGTCAATA 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24212858854
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5