BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg349641 Length=309 Score E Sequences producing significant alignments: (Bits) Value AT5G03580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 481 2e-135 > AT5G03580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:906956-907422 REVERSE LENGTH=306 Length=306 Score = 481 bits (260), Expect = 2e-135 Identities = 290/305 (95%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 1 ATGAGCAACGATGATAATCACGGATCGTCTTCTTGTCCAAGCAAATTTACGAGTTTGTAT 60 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATGAGCAACGATGATAATCACGGATCGTCTTCTTGTCCAAGAAAATTTACGAGTTTGTAT 60 Query 61 ATAGCAAATCTTGATGCCCAGGTCTCTGAAGAAATGTTGATTCTGATGTTTTCGGATTTC 120 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 61 ATAGCAAATCTTGATGCCCAAGTCTCTGAAGAAATGTTGTTTCTGATGTTTTCGGATTTC 120 Query 121 GGAAAGATTAGAAGATCGGTTCTAGCAAAGGATTTTAGAGGAGAGTCACGAGGATTTGCT 180 |||||| ||| |||||| ||||||||||| ||||||||||||||||| |||||||||||| Sbjct 121 GGAAAGGTTATAAGATCAGTTCTAGCAAAAGATTTTAGAGGAGAGTCGCGAGGATTTGCT 180 Query 181 TTCATTGTGTTTGAAAACGCGGATAGTGCTGGACGAGCCATGCTTCATATGAACGGAAGG 240 ||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 181 TTCATTGAGTTTGAAAGTGCGGATAGTGCTGGACGAGCCATGCTTCATATGGACGGAAGG 240 Query 241 TTAATAGGTCAGAAGATTCTATACGTTGAGAGGACACCCAAGGTCGAAGAAGGTCGAGAC 300 |||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||| Sbjct 241 TTAATAGGTCAGAAGATTCTATGCGTTCAGAGGACACCCAAGGTCGAAGATGGTCGAGAC 300 Query 301 ATATG 305 ||||| Sbjct 301 ATATG 305 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14326308465 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5