BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg349641

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03580.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   481    2e-135


> AT5G03580.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:906956-907422 REVERSE LENGTH=306
Length=306

 Score =  481 bits (260),  Expect = 2e-135
 Identities = 290/305 (95%), Gaps = 0/305 (0%)
 Strand=Plus/Plus

Query  1    ATGAGCAACGATGATAATCACGGATCGTCTTCTTGTCCAAGCAAATTTACGAGTTTGTAT  60
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1    ATGAGCAACGATGATAATCACGGATCGTCTTCTTGTCCAAGAAAATTTACGAGTTTGTAT  60

Query  61   ATAGCAAATCTTGATGCCCAGGTCTCTGAAGAAATGTTGATTCTGATGTTTTCGGATTTC  120
            |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct  61   ATAGCAAATCTTGATGCCCAAGTCTCTGAAGAAATGTTGTTTCTGATGTTTTCGGATTTC  120

Query  121  GGAAAGATTAGAAGATCGGTTCTAGCAAAGGATTTTAGAGGAGAGTCACGAGGATTTGCT  180
            |||||| ||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  121  GGAAAGGTTATAAGATCAGTTCTAGCAAAAGATTTTAGAGGAGAGTCGCGAGGATTTGCT  180

Query  181  TTCATTGTGTTTGAAAACGCGGATAGTGCTGGACGAGCCATGCTTCATATGAACGGAAGG  240
            ||||||| ||||||||  ||||||||||||||||||||||||||||||||| ||||||||
Sbjct  181  TTCATTGAGTTTGAAAGTGCGGATAGTGCTGGACGAGCCATGCTTCATATGGACGGAAGG  240

Query  241  TTAATAGGTCAGAAGATTCTATACGTTGAGAGGACACCCAAGGTCGAAGAAGGTCGAGAC  300
            |||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||
Sbjct  241  TTAATAGGTCAGAAGATTCTATGCGTTCAGAGGACACCCAAGGTCGAAGATGGTCGAGAC  300

Query  301  ATATG  305
            |||||
Sbjct  301  ATATG  305



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14326308465


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5