BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349656
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03740.1 | Symbols: HD2C, HDT3 | histone deacetylase 2C | ch... 754 0.0
> AT5G03740.1 | Symbols: HD2C, HDT3 | histone deacetylase 2C |
chr5:981876-984200 FORWARD LENGTH=1242
Length=1242
Score = 754 bits (408), Expect = 0.0
Identities = 521/574 (91%), Gaps = 13/574 (2%)
Strand=Plus/Plus
Query 410 AACTTGAGGCTGCTGGTTACAGAGCTGCTCCGAAATCAGCTGCGAAACAGGTGAACTTTC 469
|||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct 441 AACTTGAGGCTGCTGGTTTCAAAGCTGCTCCGAAATCTGCTGCGAAACAGGTGAACTTTC 500
Query 470 AATTGCCAAATGAAGATGTCAAGGCCAAGCAAGATGATGAAGCTGATGATAGTGAAGAGG 529
| |||||||||||||||||||| ||||||||||||||||| ||||| | ||||||||| |
Sbjct 501 AGTTGCCAAATGAAGATGTCAAAGCCAAGCAAGATGATGACGCTGACGGTAGTGAAGAAG 560
Query 530 AGTCTTCAGATGATGATGAGAACT-CTAACTCTGAAGACTCTGGA-GATGAGGAGGTTGC 587
| ||||||||||||||||| | | ||||||| |||| ||| || ||| ||||| |
Sbjct 561 ATTCTTCAGATGATGATGA-TAGTGAAAACTCTGGAGAC-GAGGAGGAAGAGAAGGTTAC 618
Query 588 GGCTGCAGTTGGCAGTGAGGAAGATGATGAAGATGACTCATCAGACGACGAAGAAGATGA 647
|||| | | | ||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 619 TGCTG-A-AT--C--TGA--CAG-TGAGGAAGATGACTCATCAGACGACGAAGAAGATGA 669
Query 648 CTCATCAGAGGAGGAGACCCCAAAGAAGCCTGAAGAACCCAAGAAGAGGTCTGCAGAAGC 707
||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 670 CTCCTCAGAAGAGGAAACCCCAAAGAAGCCTGAAGAACCCAAGAAGAGGTCTGCAGAACC 729
Query 708 CAACTCCTCCAAGAACCCTGCTTCCAACAAGAAGGCTAAGTTCGTAACTCCTCAGAAAAC 767
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 730 CAACTCCTCCAAGAACCCTGCGTCCAACAAGAAGGCTAAGTTTGTAACTCCTCAGAAAAC 789
Query 768 AGAGACAAAGAAACCGCATGTCCATGTTGCAACTCCTCATCCATCAAAACAGGGGGGTAA 827
||| | ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 790 AGATTCGAAGAAACCGCATGTCCATGTTGCAACTCCTCATCCCTCAAAACAGGCGGGTAA 849
Query 828 GAATTCTGGTGGAAGCAGCATTGGAGAGAAATCGAAGCAGCAGCAGACACCAAAGTCTGC 887
||||||||||||| |||||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct 850 GAATTCTGGTGGAGGCAGCACTGGAGAGACATCGAAGCAGCAGCAGACACCGAAGTCTGC 909
Query 888 AGGAGCGTTTGGGTGCAAGTCGTGCAGCAGAACCTTTACTTCGGAAATGGGATTGCAGTC 947
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 910 AGGAGCGTTTGGGTGCAAGTCGTGCACCAGAACCTTTACTTCGGAAATGGGATTGCAGTC 969
Query 948 TCACACAAAGGCCAAACACAGTGCAGCTGCTTGA 981
||||||||||||||||||||||||||||||||||
Sbjct 970 TCACACAAAGGCCAAACACAGTGCAGCTGCTTGA 1003
Score = 427 bits (231), Expect = 9e-119
Identities = 266/283 (94%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 13 GGTGTTGAAGTTAAGAATGGCACACCACTTCATATAGATCCTGGGGTAGATATGCTCGTG 72
|||||||||||||||||||||| ||||||||| ||||||||||| |||| | |||||||
Sbjct 131 GGTGTTGAAGTTAAGAATGGCAAACCACTTCACCTAGATCCTGGGCTAGACAGGCTCGTG 190
Query 73 CACATCTCACAGGTTGCTTTGGGAGAGAATAAGAGCAATGTAACCGAACCAATCCAGCTT 132
|||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 191 CACATCTCTCAGGTTGCTTTGGGAGAGAGTAAGAACAATGTAACCGAACCAATCCAGCTT 250
Query 133 TACGTGACAGTTGGA-CAGGATAAGCTTCTCATTGGAACGCTATCTCATGAGAGGTTTCC 191
|||||||| |||||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 251 TACGTGACTGTTGGATC-GGATAAGCTTCTCATTGGAACGCTATCTCATGAGAAGTTTCC 309
Query 192 TCAGCTGGCTACGGAGCTTGTGTTGGAAAGGAACTTTGCGCTGTCTCATAGTTGGAAGAA 251
||||||| |||||||| |||| |||||||||||||||||||||||||||| |||||||||
Sbjct 310 TCAGCTGTCTACGGAGATTGTCTTGGAAAGGAACTTTGCGCTGTCTCATACTTGGAAGAA 369
Query 252 TGGGAGCGTTTTCTTCTCTGGTTACAAAGTTGATGCATCTGAT 294
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 TGGGAGCGTTTTCTTCTCTGGTTACAAAGTTGATGCATCTGAT 412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5