BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349657
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03450.1 | Symbols: | Transducin/WD40 repeat-like superfami... 680 0.0
AT5G03750.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 255 7e-67
> AT5G03450.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:858769-862297 REVERSE LENGTH=2137
Length=2137
Score = 680 bits (368), Expect = 0.0
Identities = 615/731 (84%), Gaps = 29/731 (4%)
Strand=Plus/Plus
Query 466 ATCTATCAAGAACGTCATGGACATG-AACCCTCTTACAGCTTTAAACATAAGGGAGAAGT 524
||||| ||||| | ||||||||| | ||| |||| |||||| | |||| ||||||| |
Sbjct 846 ATCTACCAAGAGCATCATGGACA-GTCACCTTCTTGCAGCTTCAGACATCAGGGAGATCT 904
Query 525 GTTAGTTAATGGTGGTCGTATATTCGACATAGATGGTGGTAGACAGAT-TCTGTTATTA- 582
| || | || ||||| |||||||| |||||||||||||||||||| || | | ||| ||
Sbjct 905 GCTAATAAACGGTGGCCGTATATTTGACATAGATGGTGGTAGACAAATAT-TATTA-TAT 962
Query 583 GCCCGTAGGCTCTCAGGCAG-TGGTGGAACGTTTGTACTTACGCAAATGAACTTACATTC 641
|||||||||||||||||| | ||||||||||||||| ||||||||||||| | |||||||
Sbjct 963 GCCCGTAGGCTCTCAGGC-GTTGGTGGAACGTTTGTGCTTACGCAAATGAGCCTACATTC 1021
Query 642 G---GGTGAGATTGAAGATGATATTTTGTTGCCTCGTACCACTAGAGCTATTAAAGATCT 698
| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1022 GCCTTGTGAGATT---GATGATATTTTGTTGCCTCGTACCACTAGAGCAATTAAAGATCT 1078
Query 699 TCGTCTTTCCCCTCACAATAACGGGCTTGCGGTATTTGG-TACTCTAGGGAAAAAGTTAT 757
|| ||||||||||||||||| |||||||| |||||||| | ||||||| ||||| ||||
Sbjct 1079 TCACCTTTCCCCTCACAATAATGGGCTTGCAGTATTTGGGT-CTCTAGGAAAAAAATTAT 1137
Query 758 CAGTCATAAGCTTGGATAGTCACAACACTGTCTTATCTTATGATCATCTACCAGCTGCAC 817
| || ||||||||||| || ||||| ||||||||||||||||||| | ||| |||||||
Sbjct 1138 CTGTTATAAGCTTGGAGAGCCACAATACTGTCTTATCTTATGATC-T--ACCGGCTGCAC 1194
Query 818 CTTGGTCTTGTTCTTGGGATCTCAACAAT-TGTCACCATGTTTATGCTGGACTACAGAAT 876
|||||||||| || ||||||||||| || | ||||||| |||||||||||||||| |||
Sbjct 1195 CTTGGTCTTGCTCGTGGGATCTCAA-AAGCTCTCACCATATTTATGCTGGACTACAAAAT 1253
Query 877 GGAATGGTTTT-AGTATTTGACATGCGTCAAACCACAGGACCTTTGGCATCGTTGGCTGG 935
||||||||||| | |||||||||||||||||||||| |||||||| |||||| || | ||
Sbjct 1254 GGAATGGTTTTGA-TATTTGACATGCGTCAAACCACGGGACCTTTCGCATCGATGACAGG 1312
Query 936 CGTAACAAGCAATCCGGTTCATAGTATACACCATCTCTCTG-CTAATTCCACTCCAACTT 994
| |||||| |||||| ||||||| | | || |||||||||| | ||||||||||||||||
Sbjct 1313 CTTAACAACCAATCCAGTTCATACTGTCCATCATCTCTCTGGC-AATTCCACTCCAACTT 1371
Query 995 CTGATGTCCGTGCGCTCTTATCCGCTTCTTCCA-CGGGGCTGTGTCAGTGGAACATCAGT 1053
||||||||||| | |||||||| |||||||||| |||| ||||||||||||||||| |||
Sbjct 1372 CTGATGTCCGTACCCTCTTATCTGCTTCTTCCATCGGG-CTGTGTCAGTGGAACATTAGT 1430
Query 1054 GGCAGTGAGGGATGGTCAACTTTGGTTTCTGTTACAAGAAACCTAGGAATTTGCAT-TGC 1112
|| || |||||| | || | || ||||| | || |||||| ||| | ||||| | |
Sbjct 1431 GGTAGCGAGGGAAGCCCATCATTAGTTTCGGAAACGGGAAACCCAGGTGTATGCATAT-C 1489
Query 1113 CTCCTCGTATTGTCCTCGCAGCAATCATGTGGTTGCCTCTTATAAACGGAGAGTTGAATC 1172
||||||||| ||||| |||||||||||| | || || ||||||| || ||||||| |||
Sbjct 1490 CTCCTCGTACTGTCCCCGCAGCAATCATATAGTAGCTTCTTATAGACCAAGAGTTGGATC 1549
Query 1173 TTCTGAGGATA 1183
||||| ||||
Sbjct 1550 ATCTGATGATA 1560
Score = 387 bits (209), Expect = 2e-106
Identities = 305/350 (87%), Gaps = 12/350 (3%)
Strand=Plus/Plus
Query 1181 ATAGTAATGGTGTAGAAGGATTTCATGTTTGTCTCAAGAAAAGAGGTGATGGTTCTTATT 1240
|||||||||||||||| |||||||||||||||| ||||| |||||||| || ||| ||||
Sbjct 1609 ATAGTAATGGTGTAGATGGATTTCATGTTTGTCACAAGAGAAGAGGTGTTGATTCGTATT 1668
Query 1241 -CTCAGAAAC-AGTCATCCACACAACCTATAGTAGATTCCATCGGTTTGCCAAGAACAGA 1298
| ||||||| | || ||||||||| |||| |||||| ||||| |||||||||||||||
Sbjct 1669 AC-CAGAAACTA-TCCTCCACACAAGCTATTGTAGATCCCATCCGTTTGCCAAGAACAGC 1726
Query 1299 GATTATAGACTTTGGCAAGGAAAGGTCACAACTTTTTGCATCTTATGAAGAGTCCACTCG 1358
||||||||||||||| ||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 1727 GATTATAGACTTTGGTGGGGAAAGGAAACAACTTTTTGCATCTTGTGACGAGTCCACTCG 1786
Query 1359 TGAGCTCATCTTGCAAGATCCTTGGTCTTTTGCTGTCTCTCAACGCTTTG-CATTGTCAA 1417
|||||||||||||||||||||| | ||||| || | |||||||| ||| |||||||||
Sbjct 1787 GGAGCTCATCTTGCAAGATCCTTCGACTTTTACTATTTCTCAACG-GTTGCCATTGTCAA 1845
Query 1418 GTCATCTTCCGCTTCAAGACGTGAAATAC-GCTAACCTCAATGGATCAGG-TCTGCTCGG 1475
||||||||||||||||||| ||||||||| | | || ||||||| || || |||||||||
Sbjct 1846 GTCATCTTCCGCTTCAAGATGTGAAATACTG-TCACGTCAATGGTTC-GGATCTGCTCGG 1903
Query 1476 TCTCTTAACCGATGATAGATTGCAGTTTCTTAG-AAGCGAATCGCCATGA 1524
||||||||| ||||||||||||||| ||||||| || |||||| ||||||
Sbjct 1904 TCTCTTAACGGATGATAGATTGCAGATTCTTAGGAA-CGAATCTCCATGA 1952
Score = 200 bits (108), Expect = 3e-50
Identities = 159/184 (86%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 172 TGTTCGATCTGTATGGAAGTTTGGACCAACGGTGGCGAACATCAAGTCTCTTGTCTTCCC 231
||||| |||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||
Sbjct 417 TGTTCTATCTGTATGGAAGTTTGGACCAGCGGTGGCCAACACCAAGTCTGTTGTCTTCCC 476
Query 232 TGTGGACACTTGTATGGATTTTCTTGCATCAACAAGTGGTTACAGCATCGACCAAGTTCA 291
||||||||||||||||||| ||| ||||||||||||||||| ||||| |||| |||| |
Sbjct 477 TGTGGACACTTGTATGGATATTCCTGCATCAACAAGTGGTTTCAGCAGCGACGAAGTGGA 536
Query 292 GGAAAGTGTCCTCAATGCAACAGAGCATGTAGCTTGAAAGATGTC-GTGAAAATTTACGG 350
|| |||||||| | ||||||| | ||||||||||| ||||||| | |||||| || |
Sbjct 537 GGGAAGTGTCCCCTGTGCAACAAAATATGTAGCTTGAGAGATGTCCG-GAAAATCTATGC 595
Query 351 ATCA 354
||||
Sbjct 596 ATCA 599
> AT5G03750.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G03450.1);
Has 1807 Blast hits to 1807 proteins in 277
species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
NCBI BLink). | chr5:984796-985497 FORWARD LENGTH=510
Length=510
Score = 255 bits (138), Expect = 7e-67
Identities = 162/174 (93%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 1351 TCCACTCGTGAGCTCATCTTGCAAGATCCTTGGTCTTTTGCTGTCTCTCAACGCTTTGCA 1410
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 337 TCCACCCGTGAACTCATCTTGCAAGATCCTTGGTCTTTTGCTGTCTCACAACGGTTCGCA 396
Query 1411 TTGTCAAGTCATCTTCCGCTTCAAGACGTGAAATACGCTAACCTCAATGGATCAGGTCTG 1470
||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 397 TTGTCAAGTCAACTTCCGCTTCAAGATGTGAAATACGCTAACCTCAATGGCTCGGGTCTG 456
Query 1471 CTCGGTCTCTTAACCGATGATAGATTGCAGTTTCTTAGAAGCGAATCGCCATGA 1524
||||||||||||||| |||||||||| |||||||||||||||||||| ||||||
Sbjct 457 CTCGGTCTCTTAACCAATGATAGATTCCAGTTTCTTAGAAGCGAATCTCCATGA 510
Score = 219 bits (118), Expect = 9e-56
Identities = 139/149 (93%), Gaps = 1/149 (1%)
Strand=Plus/Plus
Query 810 AGCTGCACCTTGGTCTTGTTCTTGGGATCTCAACAATTGTCACCATGTTTATGCTGGACT 869
||||||||||| |||||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct 109 AGCTGCACCTT-GTCTTGTTCTTGGGATCTCAACAACTATCACAATGTTTATGCTGGACT 167
Query 870 ACAGAATGGAATGGTTTTAGTATTTGACATGCGTCAAACCACAGGACCTTTGGCATCGTT 929
|||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 168 ACAGAATGGAATGGTTTTAGTATTTGACATGCGTCAAAACAGAGGACCTTTGGTTTCGTT 227
Query 930 GGCTGGCGTAACAAGCAATCCGGTTCATA 958
||||| ||||||||||||| |||||||||
Sbjct 228 GGCTGACGTAACAAGCAATTCGGTTCATA 256
Score = 130 bits (70), Expect = 4e-29
Identities = 76/79 (96%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 1191 TGTAGAAGGATTTCATGTTTGTCTCAAGAAAAGAGGTGATGGTTCTTATTCTCAGAAACA 1250
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 258 TGTAGATGGATTTCATGTTTGTCTCAAGAGAAGAGGTGATGGTTCTTATTCTCAGAAACA 317
Query 1251 GTCATCCACACAACCTATA 1269
||||||||||||| |||||
Sbjct 318 GTCATCCACACAAGCTATA 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75200416410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5