BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349820
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05510.1 | Symbols: | Mad3/BUB1 homology region 1 | chr5:16... 1458 0.0
> AT5G05510.1 | Symbols: | Mad3/BUB1 homology region 1 | chr5:1630559-1632598
REVERSE LENGTH=1538
Length=1538
Score = 1458 bits (789), Expect = 0.0
Identities = 887/934 (95%), Gaps = 8/934 (1%)
Strand=Plus/Plus
Query 511 CAGCGTCAGGAACAAAAACTGTCTGGAAAGCACCACAAGG-T--TGAGAGGCAACAACAT 567
|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 514 CAGCGTCAAGAACAAAAACTGTCTGGAAAGCACCACAAGGTTGATGAGAGGCAACAACAT 573
Query 568 GAGCCGGTGTTGAATTTTGTTGATAAAGCCATTGTAGGAAAGCCTGAAGCAGAAAATGCT 627
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 574 GAGCCTGTGTTGAATTTTGTTGATAAAGCCATTGTAGGGAAGCCTGAAGCAGAAAATGCT 633
Query 628 TGCCATCACGGTTTGGTGGATCCCACAATAAACATGAAGGAAGCCATGAATTCAATCAAC 687
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 634 TGCCATCACGGTTTGGTGGATCCCACAATAAACATGAAGGAAGCCATGAATACAATCAAC 693
Query 688 AACATGTTCAAAGAGCCTATAGAAATTGCTCCACTTCAGAGAAGATCACGACAGAGAAGT 747
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 694 AACATGTTCAAAGAGCCTATAGAAACTGCTCCACTTCAGAGAAGATCACGACAGAGAAGT 753
Query 748 CAGAACAAAGAAAACCAAGGATGCAACAATAGTTTTGAAGTTTTTGTGGACGAGAATCTC 807
|||||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||
Sbjct 754 CAGAACAAAGAAAATCAAGGATGCAACAATAGCTTTGAGGTTTTTCTGGACGAGAATCTC 813
Query 808 GAAAGTGAAACAGGGACAAGTAGAAAAGCAAAGACTGGTACTACTCA--G-GGATCCCAG 864
||| ||||||||||||||||| |||||||||||||| |||||||||| | |||||||||
Sbjct 814 GAATGTGAAACAGGGACAAGTGGAAAAGCAAAGACTAGTACTACTCAGTGTGGATCCCAG 873
Query 865 CCTAATCAAGAGTCCTTTGAGATTTTCATTGATGATGAAAACGCTGATGAAACTGCCGAT 924
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||
Sbjct 874 CCTAATCAAGAGTCCTTTGAGATATTCATTGATGATGAAAACACTGATGAAACTGCGGAT 933
Query 925 GAAAATGACGAGGCTGGAAAAGCTTTTGTCTTTCTCCTGCCAAGAGACCATTCACCTGAA 984
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 GAAAATGATGAGGCTGGAAAAGCTTTTGTCTTTCTCCTGCCAAGAGACCATTCACCTGAA 993
Query 985 AGCTCTGAAGAAGCAGACAGAAACAGTCCTCCTCGAGCTAGATTTAGAGAAGATACAGTT 1044
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 994 AGCTCTGAAGAAGCAGACAGAAACACTCCTCCTCGGGCTAGATTTAGAGAAGATACAGTT 1053
Query 1045 GTTCATAGATTTGTTGGTTCAACAATCTCCGATGAGCCAGAAGCAGTTGAAAACGCCTGC 1104
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1054 GTTCGTAGATTTGTTGGTTCAACAATCTCCGATGAGCCTGAAGCAGTTGAAAACGCCTGC 1113
Query 1105 CACCATGGCCTTGTTGACCCTACAGTCAACCTAAAGGAAGCTATGAAGGACATAAACAAC 1164
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1114 CACCATGGCCTTGTTGACCCTACAGTAAACCTAAAGGAAGCTATGGAGGACATAAACAAC 1173
Query 1165 ATGTTTGGCGAACCAAT-AGATTTTGTTAGACCCAACCGCTCTAAAAACAGAGGAAAAGC 1223
||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct 1174 ATGTTTGGCGAACCAATCA-ATTTTGTTAGACCCAACCGCTCTAAAAACAAAGGAAAAGC 1232
Query 1224 AGTAGTAGAGACAAAACCATATCCTGCTGCAGGTTTCTCAATACTTGAAGATGATGACGA 1283
||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| ||
Sbjct 1233 AGTAGTAGAGACAAAACCAAATCCTGCTGCAGGTTTCTCAATACTCGAGGATGATGATGA 1292
Query 1284 TGAAGAAGCTGAGCAAGAACACCAAGGGACGAACCGGCCGACTCAGATATCGCCTTCAAA 1343
|||||||||||||||||||| ||||||| || || ||||||||||| || |||||||||
Sbjct 1293 AGAAGAAGCTGAGCAAGAACATCAAGGGAAGAGCCAGCCGACTCAGAGATTGCCTTCAAA 1352
Query 1344 ATCAGATGAGCGCGAACTATTTGAGCCAACGGTGTGCACAAAAGTAGCCTTGGATGAGAT 1403
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 1353 ATCAGATGAGCGCGAACTATTTGAACCAACGGTATGCACAAAAGTAGCCTTGGATGAAAT 1412
Query 1404 TAACAAATTGTTCGCAATGCCAATGGACTTCTAA 1437
||||||||||| |||||||||||||||||||||
Sbjct 1413 CAACAAATTGTTTGCAATGCCAATGGACTTCTAA 1446
Score = 804 bits (435), Expect = 0.0
Identities = 469/486 (97%), Gaps = 0/486 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAAGATCGAGAACGGCTACGAGAATTTTTTGGCTTCAGTGATCGTCGACATCAAA 60
|||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 31 ATGGCGAAGAACGAGAACGGCTACGAGAATTTGCTGGCTTCATTGATCGTCGACATCAAA 90
Query 61 TCATACTCTGGAAAAGACCATCTTCTTCCCTGGATCCGAGGTGTTAAGAAGATGAAAGAG 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 91 TCATACTCTGGAAAAGACCATCTTCTTCCGTGGATCCGAGGTGTTAAGAAGATGAAAGAG 150
Query 121 AGCTTGCCCACTGAGATATTGAACGAGAAGCTGCCGCGGTTTTTGCAGAAATGTGCACAG 180
|| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 151 AGTTTGCCGTCTCAGATATTGAACGAGAAGCTGCCGCGGTTTTTGCAGAAATGTGCAGAG 210
Query 181 TCATTTGAATCTGATAAGAGATATAAGAACGATTCGCGGTATATTCGTGTTTGGTTGCAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 TCATTTGAATCTGATAAGAGATATAAGAACGATTCGCGGTATATTCGTGTTTGGTTGCAG 270
Query 241 CTGATGGACTTTGTAGACGATCCAAGAGCCCTTTTAAGAACCATGGAAGCAAAAAGTATA 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 271 CTGATGGACTTTGTAGACGATCCAAGAGCTCTTTTAAGAACCATGGAAGCAAAAAGTATA 330
Query 301 GGGACCAAGAGGTCACTGTTCTACCAGGCATATGCTCTTCATTATGAGAAGATGAAGAGA 360
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 331 GGGACCAAGAGGTCACTCTTCTACCAGGCATATGCTCTCCATTATGAGAAGATGAAGAGA 390
Query 361 TTTGAGGAGGCTGAGAAAATGTACCGTCTTGGGGTGCAAAACCTTGCAGAACCCATGGAT 420
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 391 TTTGAGGATGCTGAGAAAATGTACCGTCTTGGGGTTCAAAACCTTGCAGAACCCATGGAT 450
Query 421 GAGTTACAGAAATCATACTTGCAGTTCGTTAGTCGCATGGAGAGGCACAAAAAGAAAAAG 480
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 451 GAGTTACAGAAATCATACTTGCAGTTCGTTACTCGCATGGAGAGGCACAAAAAGAAGAAG 510
Query 481 ACACAG 486
||||||
Sbjct 511 ACACAG 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5