BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349833
Length=465
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05470.1 | Symbols: EIF2 ALPHA, ATEIF2-A2, EIF2-A2 | eukaryo... 628 1e-179
AT2G40290.1 | Symbols: | Eukaryotic translation initiation fac... 315 3e-85
> AT5G05470.1 | Symbols: EIF2 ALPHA, ATEIF2-A2, EIF2-A2 | eukaryotic
translation initiation factor 2 alpha subunit | chr5:1620458-1622340
FORWARD LENGTH=1282
Length=1282
Score = 628 bits (340), Expect = 1e-179
Identities = 384/406 (95%), Gaps = 0/406 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAATCCCGCACCGAATCTGGAATGTCGTATGTACGAATCCAAATACCCTGATGTA 60
||||||||||| || |||||||| |||||||||||||||||||| | |||||||||||||
Sbjct 122 ATGGCGAATCCTGCTCCGAATCTAGAATGTCGTATGTACGAATCGAGATACCCTGATGTA 181
Query 61 GACATGGCGGTGATGATCCAGGTGAAGAACATCGCTGACATGGGAGCTTACGTCTCTCTA 120
||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||
Sbjct 182 GACATGGCGGTGATGATTCAGGTGAAGACCATCGCTGACATGGGAGCTTACGTATCTCTC 241
Query 121 CTTGAGTACAACGACATTGAAGGAATGATCCTATTCTCTGAGCTCTCTCGCCGTCGGATT 180
||||| |||||| |||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 242 CTTGAATACAACAACATCGAAGGAATGATCCTGTTCTCCGAGCTCTCTCGCCGTCGGATT 301
Query 181 CGTAGTATCAGTAGCTTAATCAAGGTCGGTCGGATCGAGCCTGTAATGGTCCTTCGTGTC 240
|||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||
Sbjct 302 CGTAGTATCAGTAGCTTAATCAAGGTCGGTCGTACCGAGCCTGTTATGGTCCTTCGTGTC 361
Query 241 GATAGAGAGAGAGGTTACATTGATCTTAGTAAGCGTAGGGTTAGTGATGAGGACAAAGGG 300
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
Sbjct 362 GATAGAGAGAGAGGTTACATTGATCTCAGTAAACGTAGGGTTAGTGATGAGGACAAAGAG 421
Query 301 GCTTGTGAGGAGAGGTTTAATAAGAGCAAGCTTGTTCACTCTATCATGCGTCATGTTGCT 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GCTTGTGAGGAGAGGTATAATAAGAGCAAGCTTGTTCACTCTATCATGCGTCATGTTGCT 481
Query 361 GAGACTGTTGGTGTCGATTTGGAGGAGCTATACGTACACATCGGTT 406
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 482 GAGACTGTTGGTGTCGATTTGGAGGAGCTATACGTAAACATCGGTT 527
> AT2G40290.1 | Symbols: | Eukaryotic translation initiation factor
2 subunit 1 | chr2:16828766-16831054 REVERSE LENGTH=1464
Length=1464
Score = 315 bits (170), Expect = 3e-85
Identities = 314/386 (81%), Gaps = 0/386 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAATCCCGCACCGAATCTGGAATGTCGTATGTACGAATCCAAATACCCTGATGTA 60
||||||| || |||||||||| || ||||| |||||||| | |||||||| || ||
Sbjct 166 ATGGCGAGTCAAACACCGAATCTCGAGTGTCGGATGTACGAGGCGAAATACCCAGAGGTG 225
Query 61 GACATGGCGGTGATGATCCAGGTGAAGAACATCGCTGACATGGGAGCTTACGTCTCTCTA 120
|| ||||||||||||||||||||||||||||| || || ||||||||||| || |||||
Sbjct 226 GATATGGCGGTGATGATCCAGGTGAAGAACATTGCCGATATGGGAGCTTATGTTTCTCTC 285
Query 121 CTTGAGTACAACGACATTGAAGGAATGATCCTATTCTCTGAGCTCTCTCGCCGTCGGATT 180
|| ||||||||| |||| ||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 286 CTCGAGTACAACAACATCGAAGGCATGATCCTTTTCTCCGAGCTCTCTCGTCGTCGGATC 345
Query 181 CGTAGTATCAGTAGCTTAATCAAGGTCGGTCGGATCGAGCCTGTAATGGTCCTTCGTGTC 240
|| ||| | || || || || |||||||| | || |||||||| ||||| || |||||
Sbjct 346 CGAAGTGTTAGCAGTTTGATTAAGGTCGGAAGAATTGAGCCTGTCATGGTTCTCCGTGTT 405
Query 241 GATAGAGAGAGAGGTTACATTGATCTTAGTAAGCGTAGGGTTAGTGATGAGGACAAAGGG 300
|| | ||||| ||||||||||||||| || || ||||| || || || || || | |
Sbjct 406 GACAAAGAGAAAGGTTACATTGATCTGAGCAAACGTAGAGTCAGCGAGGAAGATATTCAG 465
Query 301 GCTTGTGAGGAGAGGTTTAATAAGAGCAAGCTTGTTCACTCTATCATGCGTCATGTTGCT 360
||||||| ||||||| ||| |||||||| |||||||| ||||||||||| |||||||||
Sbjct 466 ACTTGTGAAGAGAGGTATAACAAGAGCAAACTTGTTCATTCTATCATGCGCCATGTTGCT 525
Query 361 GAGACTGTTGGTGTCGATTTGGAGGA 386
|||||| || | |||||||||||
Sbjct 526 GAGACTCTTTCAATTGATTTGGAGGA 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22103024680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5