BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349841
Length=2079
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1445 0.0
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindi... 1315 0.0
AT5G05720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 394 2e-108
> AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829193-2834695 FORWARD LENGTH=2643
Length=2643
Score = 1445 bits (782), Expect = 0.0
Identities = 1085/1226 (88%), Gaps = 42/1226 (3%)
Strand=Plus/Plus
Query 618 TGATGTTCTTGACACTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACAGAAGA 677
||||||||||||| |||||||||||||||||| | |||||||||| || | ||||||||
Sbjct 811 TGATGTTCTTGACGCTGGTCGCCTTTTCGTCCATGGCCTGCCTTACTCTACCACAGAAGA 870
Query 678 AGAGCTTACGGAACATTTCAGCAAATTCGGTGAAATATCAGAGGTCCATCTTGTTCTTGA 737
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 871 AGAGCTTATGGAACATTTCAGCAAATTCGGTGATATATCAGAGGTCCATCTTGTTCTTGA 930
Query 738 CAAGGAGACAAAAAATTCCAGAGGAATGGCCTTCGTCCTTTACCAGATACCGGAATATGC 797
|||||| || | || || ||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 931 CAAGGATACCAGAAGTTGCAGGGGAATGGCCTTCGTCCTTTACCTGATACCGGAATCTGC 990
Query 798 AAAAAGGGCAATGGAGGAATTAGATAACAAAGATTTCCAGGGGCGG-CTGTTGCATATTT 856
||||| ||||||||| |||||||||| | ||||||||| ||| | |||||||||||
Sbjct 991 AAAAATGGCAATGGATAAATTAGATAAGTTACCTTTCCAGGGCCGGAC-GTTGCATATTT 1049
Query 857 TACCAGCTAAGAAGCCTGATAAACAAGTGTCAGTGACCAGTTCTATGTTTCGAAATAACT 916
||||||||||| || | | ||| |||| || | | | | | | | ||||||
Sbjct 1050 TACCAGCTAAG--CCCCG-T--GCAA-TGTC--TG-CTA-AAC-AAG--T--AGATAACT 1094
Query 917 CTTCTAATCTGCCAAAAGCATTCAAGCAAA-AGAGGGAGGAACAAAGAAAGGCGTCTGAA 975
| ||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 1095 CCTCTAATCTGCCAAAATCATTCAAG-AAAGAGAGGGAGGAACAAAGGAAGGCGTCTGAA 1153
Query 976 GCCAGTGGAAATACAAAAGCTTGGAATAGTTTTTTCATGCGACCCGATACTGTCGTGGAA 1035
|| ||||||| ||||| |||||||| ||||| |||||||||||||||||| || |||||
Sbjct 1154 GCTTGTGGAAACACAAATGCTTGGAACAGTTTCTTCATGCGACCCGATACTATCCTGGAA 1213
Query 1036 AACATAGTCAGGT-GTTATGGTGTAACAAAGAGTGAGTTTCTTGACCGTGAATGCGACGA 1094
||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1214 AACTTAGTCAGGTCG-TATGGTGTAACAAAGAGTGAGTTACTTGACCGTGAATGCGAAGA 1272
Query 1095 TCCTGCAGTACGACTTGCTTTGGGAGAAACAAAAGTGATTATGGAGACCAAAGAAGCACT 1154
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1273 TCCTGCAGTACGCCTTGCTTTGGGAGAAACAAGAGTGATTATGGAGACCAAAGAAGCCCT 1332
Query 1155 TGCTAAAGCTGGAGTACGTGTCACCTCTTTGGAAGAATTTTCTGCACGGAAAGGTGATGT 1214
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1333 TGCTAAAGCTGGAGTACGTGTCACCTCTTTGGAAGAATTTGCTGCACGGAAAGGTGACGT 1392
Query 1215 GAAGAACCGAAGCAAACATATTCTCTTAGTAAAGAATTTGCCATTTGCTTCCAGTGAAAA 1274
||||||| |||||||||||||||||||||| ||| ||||||| |||||||||| ||||||
Sbjct 1393 GAAGAACAGAAGCAAACATATTCTCTTAGTCAAGCATTTGCCCTTTGCTTCCACTGAAAA 1452
Query 1275 GGAACTGGCTCAAATGTTT-GGAAGATTTGGAAGTCTAGACAAAATTGTTCTCCCTCGGA 1333
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||
Sbjct 1453 GGAACTGGCTCAAATGTTTCGGAA-ATTTGGAAGTCTAGACAAAATTGTTCTCCCTCCGA 1511
Query 1334 CGAAGACGTTGGCTTTGTTTGTTTTCCTTAAACCGGCTGAGGCACGTGCAGCTATGAAGG 1393
| |||||| |||||||| ||||||||||| || ||||||||||||||||||||||||| |
Sbjct 1512 CTAAGACGATGGCTTTGGTTGTTTTCCTTGAAGCGGCTGAGGCACGTGCAGCTATGAACG 1571
Query 1394 GAATGAAATACAAGCGTTACAAAGATGCTCCCCTGTATCTGGAGTGGGCTCCT-GAAGAT 1452
|| || ||||| |||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1572 GATTGGCATACACGCGTTACAAAGATGCTCCCCTGTATCTGGAGTGGGCTCCTCG-AGAT 1630
Query 1453 ATTCTTGAGCCAAAAGCACTT-CCTGATAACAATGAAAAGACGAGTGATGTTGAAGAAAA 1511
||||||||||||||||||||| || |||||||| ||||||| ||||| ||| ||||||||
Sbjct 1631 ATTCTTGAGCCAAAAGCACTTGCC-GATAACAAAGAAAAGAAGAGTGCTGTCGAAGAAAA 1689
Query 1512 TGATGTGAGAAGACTCAACTTGGATCAGCAGGTTGGAATCGATTTGGATATAACTGAGTC 1571
||||| ||||||| ||||||| |||||||||||||||||| ||| ||||||||| |||||
Sbjct 1690 TGATGCGAGAAGAGTCAACTTAGATCAGCAGGTTGGAATCTATTCGGATATAACCGAGTC 1749
Query 1572 AAATGTCCTTTATGTTAAGAATCTGAACTTCAACACAACTGATGAGAGTTTGAGGAAGCA 1631
|||||||||| |||| |||||||||| |||||| |||||||||||| | |||| ||||||
Sbjct 1750 AAATGTCCTTCATGTAAAGAATCTGAGCTTCAAGACAACTGATGAGGGGTTGAAGAAGCA 1809
Query 1632 TTTGACTGAACTGGTGAAGCAGGGAAAGATTCTGAGTGTT-A--AGATaa-aaaaaaaTG 1687
|||||||| | ||||||||||||||||||||||||||||| | |||||| || | | |
Sbjct 1810 TTTGACTGGAGTGGTGAAGCAGGGAAAGATTCTGAGTGTTAAGCAGATAATAAGAGACT- 1868
Query 1688 GGAAGAGTCGTCCTCGTTCAAGCGGTTATGGTTTTGTAGAATTTGACTCCGTAGAGACAG 1747
||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1869 GGACGAGACG---TCGTTCAAGCGGTTATGGTTTTGTAGAATTTGACTCCGTAGAGACAG 1925
Query 1748 CGACCAGTGTCTACAGAGATCTAC-AGGGAACAACTTTTCTGGATCGGCATAAATTGATC 1806
|||||||||||||||||||||||| ||| || | | |||||||| ||||| ||||||
Sbjct 1926 CGACCAGTGTCTACAGAGATCTACCAGG-AA-A--TGTTCTGGATGGGCATTCTTTGATC 1981
Query 1807 TTGAGATTCT-CTGAAAACAAGCGGA 1831
|||| ||| | |||||||||||||||
Sbjct 1982 TTGA-ATTTTTCTGAAAACAAGCGGA 2006
Score = 287 bits (155), Expect = 3e-76
Identities = 316/388 (81%), Gaps = 34/388 (9%)
Strand=Plus/Plus
Query 2 TGACAGAGGATCGACTTCGAAATGTCTTTTCaaaaaaaGGAGAAATCACAGACGTGAAAT 61
|||||||||||| ||| ||| | ||||||| |||||||||||||||||||||||||||
Sbjct 192 TGACAGAGGATCAACTACGAGGTATCTTTTCGGAAAAAGGAGAAATCACAGACGTGAAAT 251
Query 62 TGAGGCG-TAAGAGTGATGGCAGAAGTAGACAATTTGCTTATATTGGCTTTCGTACTGAA 120
||| ||| | | ||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 252 TGAAGCGTTTA-AGTGATGGCAGAAGTAGACAATTTGCTTATATTGGATTTCGTAGTGAA 310
Query 121 CAAGAAGCTCAAGATGCTATCACATATTTTAACAAGTCTTTCATTGATACT-ATTCAAAT 179
||| ||||||||||||||||||| || ||||||||| ||||| ||| | || |||||
Sbjct 311 CAAAAAGCTCAAGATGCTATCACTTACTTTAACAAGAATTTCAAACATAGTCAT-CAAAT 369
Query 180 ATCTGTTGAGGTTGCG-ATCCCTCCTCCGAGGAAAGA-AGGCAAGGTTATTGAAAATAGT 237
||||||| ||||||| | |||||| ||||||| || | ||||| ||| |
Sbjct 370 ATCTGTTTTGGTTGCGGA-CCCTCCACCGAGGAG-GACA--CAAGG-----GAA----G- 415
Query 238 GAACATTTTTCTAATGCTTATGCTAAAGGAGACAAAAAGTTTAAGAAGAAAG--C-AGAG 294
| || | |||||||||||||||||| ||| || || ||||||| | | |||
Sbjct 416 G----TTG----A-TGCTTATGCTAAAGGAGATAAACAGATTCAGAAGAAGGATCCAGAA 466
Query 295 GCTGATCATGATCCTCAGCTTCAAGAATTTCTTGATCAGCAT-ACGAAGTTGAAATTCTG 353
| ||||||||||||||||||||||||||||||| ||||| | | ||||||||||||||
Sbjct 467 GTTGATCATGATCCTCAGCTTCAAGAATTTCTTCATCAGGAGCAT-AAGTTGAAATTCTG 525
Query 354 GTCCAATGACATGTGTATTCCTCGTTCC 381
|||||||||||||||||||| || ||||
Sbjct 526 GTCCAATGACATGTGTATTCATCCTTCC 553
Score = 279 bits (151), Expect = 5e-74
Identities = 196/218 (90%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 1832 CTTTTGAAGCAACCAAGCAAGAACTAAGACAGCTTTTCAGTCCATTTGGACAGAT-CAAG 1890
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2073 CTTTTGAAGCAACCAAGAAAGAACTAAGACAGCTTTTCAGTCCATTTGGACAGATTCAAG 2132
Query 1891 AGAGTTGAGCTTCCAGAGAAGAATCCGGGAAGATATGCTGGTTATGGTTTTATTGTATTT 1950
||||||| ||||||| ||||||| | ||| ||| |||||||||| |||| | | ||||
Sbjct 2133 AGAGTTGGGCTTCCATTGAAGAATGTGAGAAAATACGCTGGTTATGCTTTTGTAGAATTT 2192
Query 1951 GGGACAAAGCAAGAAGCTTTAAACGCTAAAAAGGCATTATCCAACACCCATTTCTATGGA 2010
||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 2193 GGGACAATGCAAGAAGCTTTAAACGCTAAAAAGGCACTCTCCAACACCCATTTCTATGGA 2252
Query 2011 CGCCCTTTGGTGCTCCAGTGGGCTAGGGATGACAAGAG 2048
|||| |||||||||| |||||||| | |||||| ||||
Sbjct 2253 CGCCATTTGGTGCTCGAGTGGGCTCGTGATGACGAGAG 2290
Score = 195 bits (105), Expect = 2e-48
Identities = 183/217 (84%), Gaps = 20/217 (9%)
Strand=Plus/Plus
Query 414 TTCCAATGGTGCTGATGAGCCTAACAAAGCCAAAACATCATTATTAGATACT------AC 467
|||||||||||||||||| |||||||||||||||| |||||| |||||| || ||
Sbjct 550 TTCCAATGGTGCTGATGACCCTAACAAAGCCAAAAGATCATTCTTAGATTCTAAAAAGAC 609
Query 468 -AG--AGAATAAAGTTGGTGATGATGTTTCTGATATGGAATACTTCAAGAGTCGGATATA 524
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 610 TAGAAAGAGTAAAGTTGGTGATGATGTTTCTGATATGGAATACTTCAAGAGTCGGATAAA 669
Query 525 TGGAATA-CTTCA-AGATGATTATTATGAAACTGATAGTCGTGAAGATGCAATTCA-TGC 581
| || | || | || ||||| | ||||| |||||||||||||||||||| || ||
Sbjct 670 -GAAAAATCTGGACAG-TGATTGT---GAAACCGATAGTCGTGAAGATGCAAT-CAATGT 723
Query 582 TTTTCCTATTGATGGAGATA-TTGAAGCTGACAGAGT 617
|||||||||||||||||| | || |||||||||||||
Sbjct 724 TTTTCCTATTGATGGAGA-AGTTAAAGCTGACAGAGT 759
> AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid binding;RNA
binding | chr4:10677229-10681771 FORWARD LENGTH=2852
Length=2852
Score = 1315 bits (712), Expect = 0.0
Identities = 1074/1243 (86%), Gaps = 47/1243 (4%)
Strand=Plus/Plus
Query 605 AAGCTGACAGAGTTGATGTTCTTGACACTGGTCGCCTTTTCGTCCGTAACCTGCCTTACA 664
|||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 AAGCTGTCAGTGATGATGTTCTTGACACTGGTCGCCTTTTCGTCCGTAACCTGCCTTACA 1163
Query 665 CTGCAACAGAAGAAGAGCTTACGGAACATTTCAGCAAATTCGGTGAA-ATATCAGAGGTC 723
||||||||||||||||||||| ||||||||| |||| ||||||| || |||||||| |||
Sbjct 1164 CTGCAACAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGT-AAGATATCAGAAGTC 1222
Query 724 CATCTTGTTCTTGACAAGGAGACAAAAAATTCCAGAGGAATGGCCTTCGTCCTTTACCAG 783
|||||||||||||||||||||||||||| ||||| ||||| |||| | ||||||||| |
Sbjct 1223 CATCTTGTTCTTGACAAGGAGACAAAAAGGTCCAGGGGAATTGCCTACATCCTTTACCTG 1282
Query 784 ATACCGGAATATGCAAAAAGGGCAATGGAGGAATTAGATAAC-AAAGATTTCCAGGGGCG 842
|| ||||||| ||| ||||||||||||||||||||||||| ||| ||| ||||| ||
Sbjct 1283 ATTCCGGAATGTGCGGCAAGGGCAATGGAGGAATTAGATAACTCAAG-TTTTCAGGGCCG 1341
Query 843 GCTGTTGCATATTTTACCAGCTAAGAAGCCTGAT-AAACAAGTGTCAGTGACCAGTTCTA 901
| ||||||||||||| ||||||||| | || | | |||| | || ||| | | |
Sbjct 1342 GTTGTTGCATATTTTGCCAGCTAAGCA-CC-G-TGAAAC-A---TC--TGA-TA-AAC-A 1389
Query 902 TGTTTCGAAATAACTCTTCTAATCTGCCAAAAGCATTCAAGCAAAAGAGGGAGGAACAAA 961
| | | ||| || ||||||| ||||||||| |||||||||| ||||| ||||||||||
Sbjct 1390 AG--T-G-AATGACACTTCTAACCTGCCAAAAACATTCAAGCAGAAGAGAGAGGAACAAA 1445
Query 962 GAAAGGCGTCTGAAGCCAGTGGAAATACAAAAGCTTGGAATAGTTTTTTCATGCGACCCG 1021
||||||| |||||||| ||||| ||||||| |||||||||||||| |||||||||||||
Sbjct 1446 GAAAGGCATCTGAAGCTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCG 1505
Query 1022 ATACT-GTCGTGGAAAACATAGTCA-GGTGTTATGGTGTAA-CAAAGAGTGAGTTTCTTG 1078
||||| || | ||||||||||||| |||| |||||||||| | ||||||||||| ||||
Sbjct 1506 ATACTATTC-TAGAAAACATAGTCAGGGTG-TATGGTGTAAGC-AAGAGTGAGTTACTTG 1562
Query 1079 ACCGTGAATGC-GACGATCCTGCAGTACGACTTGCTTTGGGAGAAACAAAAGTGATTATG 1137
|||||||| || || |||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 1563 ACCGTGAA-GCTGAAGATCCTGCTGTACGCCTTGCTTTGGGAGAAACAAAAGTGATTGCG 1621
Query 1138 GAGACCAAAGAAGCACTTGCTAAAGCTGGAGTACGTGTCACCTCTTTGGAAGAATTTTCT 1197
|||||||||||||| ||||| |||||||||||| ||| || ||||||||| ||||| ||
Sbjct 1622 GAGACCAAAGAAGCCCTTGCGAAAGCTGGAGTAAATGTTACTTCTTTGGAAAAATTTGCT 1681
Query 1198 GCACGGAAAGGTGATGTGAAGAACCGAAGCAAACATATTCTCTTAGTAAAGAATTTGCCA 1257
|| |||| ||||||| ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1682 ACAAGGAATGGTGATGAGAAAAACCGAAGCAAACATATCCTCTTAGTAAAGAATTTGCCA 1741
Query 1258 TTTGCTTCCAGTGAAAAGGAACTGGCTCAAATGTTTGGAAGATTTGGAAGTCTAGACAAA 1317
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1742 TTTGCTTCCACTGAAAAGGAACTGGCTCAAATGTTTGGAAAATTTGGAAGTCTAGACAAA 1801
Query 1318 ATTGTTCTCCCTCGGACGAAGACGTTGGCTTTGTTTGT-TTTCCTTAAACCGGCTGAGGC 1376
||| | ||||||| |||||||||| |||| ||| ||| |||| | | |||||||||||
Sbjct 1802 ATTATCCTCCCTCCGACGAAGACGATGGCCTTGGCTGTGTTTC-TGGAGCCGGCTGAGGC 1860
Query 1377 ACGTGCAGCTATGAAGGGAATGAAATACAAGCGTTACAAAGATGCTCCCCTGTATCTGGA 1436
||| |||||| | ||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1861 ACGCGCAGCTCTTAAGGGAATGGCATACAAGCGTTACAAAGATGCTCCCTTGTATCTGGA 1920
Query 1437 GTGGGCTCCTG-AAGATATTCTTGAGCCAAAAGCA-CTTCCTGATAACAATGAAAAGACG 1494
||||||||||| || ||||||||||||||||| | |||||||| | ||||||| ||| |
Sbjct 1921 GTGGGCTCCTGGAA-ATATTCTTGAGCCAAAAA-ATCTTCCTGACACCAATGAAGAGA-G 1977
Query 1495 A-GTGATGTTGAAGAAAATGATGTGAGAAGACTCAACTTGGATCAGCAGGTTGGAATCGA 1553
| |||| |||||||||||| ||||||||| |||||||||| |||||||||| ||||||
Sbjct 1978 AAGTGACATTGAAGAAAATGGCGTGAGAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGA 2037
Query 1554 TTTGGATATAACTGAGTCAAATGTCCTTTATGTTAAGAATCTGAACTTCAACACAACTGA 1613
| ||| |||||||||||||||||||| ||||||||||||||| |||||| ||||||||
Sbjct 2038 TCCAGATGTAACTGAGTCAAATGTCCTTAATGTTAAGAATCTGAGCTTCAAGACAACTGA 2097
Query 1614 TGAGAGTTTGAGGAAGCATTTGACTGAACTGGTGAAGCAGGGAAAGATTCTGAGTGTTAA 1673
|||| |||||| ||||||||| ||| ||||||||||||||||||||||||| ||||| |
Sbjct 2098 TGAGGGTTTGAAGAAGCATTTCACTAAACTGGTGAAGCAGGGAAAGATTCTCAGTGTCAC 2157
Query 1674 GATaa-aaa--a-aaaTGGGAA-GAGTCGTCCTCGTTCAAGCGGTTATGGTTTTGTAGAA 1728
||||| ||| | ||| | || ||| || || |||||||||||||||||||||||||
Sbjct 2158 GATAATAAAGCATAAAAAG-AATGAGAAGTA-TCTTTCAAGCGGTTATGGTTTTGTAGAA 2215
Query 1729 TTTGACTCCGTAGAGACAGCGACCAGTGTCTACAGAGATCTACAGGGAACAACTTTTCTG 1788
|| ||||| ||||||||||| |||||||||||||||||||||||||| || | |||||
Sbjct 2216 TTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATCTACAGGGGAC---TGTTCTG 2272
Query 1789 GATCGGCATAAATTGATCTTGAGATTCTCTGAAAACAAGCGGA 1831
||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 2273 GATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAGCGGA 2315
Score = 69.4 bits (37), Expect = 1e-10
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 482 GTGATGATGTTTCTGATATGGAATACTTCAAGAGTCGGAT 521
||||||||||||||||||||||||||||||||||| ||||
Sbjct 846 GTGATGATGTTTCTGATATGGAATACTTCAAGAGTAGGAT 885
> AT5G05720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:1716871-1719541 FORWARD LENGTH=1356
Length=1356
Score = 394 bits (213), Expect = 2e-108
Identities = 270/296 (91%), Gaps = 10/296 (3%)
Strand=Plus/Plus
Query 2 TGACAGAGGATCGACTTCGAAATGTCTTTTCaaaaaaaGGAGAAATCACAGACGTGAAAT 61
|||||||||| ||||||||| ||||||||||| ||||||||||||| ||||||||||||
Sbjct 41 TGACAGAGGAACGACTTCGAGATGTCTTTTCACGAAAAGGAGAAATCGCAGACGTGAAAT 100
Query 62 TGAGGCGTAAGAGTGATGGCAGAAGTAGACAATTTGCTTATATTGGCTTTCGTACTGAAC 121
||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 101 TGAAGCGTAAAAGTGATGGCAAAAGTAGACAATTTGCTTATATTGGCTTTCGTACTGAAC 160
Query 122 AAGAAGCTCAAGATGCTATCACATATTTTAACAAGTCTTTCATTGATAC-TATTCAAATA 180
|||||||||||||||||||||||||| ||||||||| |||||||||||| || || ||||
Sbjct 161 AAGAAGCTCAAGATGCTATCACATATGTTAACAAGTGTTTCATTGATACTTA-TCGAATA 219
Query 181 TCTGTTGAGGTTGC-GATCCCTCCTCCGAGGAAAGAAGGCAAGGTTATTGAAAATAGTGA 239
|||||||||||||| || ||||||||||||| ||||||| || | ||||||| |||
Sbjct 220 TCTGTTGAGGTTGCGGA-CCCTCCTCCGAGGGAAGAAGGGAA-G-----GAAAATACTGA 272
Query 240 ACATTTTTCTAATGCTTATGCTAAAGGAGACAAAAAGTTTAAGAAGAAAGCAGAGG 295
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 273 ACATTTTTCTAATGCTTATGCTAAAGGAGACAAAAAGATTAAGAAGAAACCAGAGG 328
Score = 322 bits (174), Expect = 9e-87
Identities = 298/351 (85%), Gaps = 35/351 (10%)
Strand=Plus/Plus
Query 1352 TTGTTTTCCTTAAACCGGCTGAGGCACGTGCAGCTATGAAGGGAAT-GAAATACAAGCGT 1410
||||||||||| ||||| ||||||||||| |||| |||||||||| | |||||||||
Sbjct 611 TTGTTTTCCTTGAACCGATTGAGGCACGTGAAGCTCTGAAGGGAATGGGCGTACAAGCGT 670
Query 1411 TACAAAGATGCTCCCCTGTATCTGGAGTGGGCTCCT-GAAGATATTCTTGAGCCAAAAGC 1469
||||||||||||||||||||||||| | | ||||| || ||||||||||||||||||||
Sbjct 671 TACAAAGATGCTCCCCTGTATCTGG-G-G--CTCCTAGA-GATATTCTTGAGCCAAAAGC 725
Query 1470 ACTT-CCTGATAACAATGAAAAGACGAGTGATGTTGAAGAAAATGATGTGAGAAGA---C 1525
|||| || |||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 726 ACTTGCC-GATAACAATGAAAATACGAGTGATGTTGAAGAAAATGATGTGAGAAGAAGAC 784
Query 1526 TCAACTTGGATCAGCAGGTTGGAATCGATTTGGATATAACTGAG-T---CA-A----ATG 1576
|||||||||||||||||||||||||||||| ||||||||||||| | | | |||
Sbjct 785 TCAACTTGGATCAGCAGGTTGGAATCGATTCGGATATAACTGAGGTATGCCCACTTTATG 844
Query 1577 -TC-CTTT--ATGTT---AAG--A---AT-CTGAACTTCAACACAACTGATGAGAGTTTG 1623
| || | | ||| || | || ||||||||||| ||| ||||||||||||||
Sbjct 845 ATTGCTGTGGACGTTTTGAAACCATGTATTCTGAACTTCAAGACA-CTGATGAGAGTTTG 903
Query 1624 AGGAAGCATTTGACTGAACTGGTGAAGCAGGGAAAGATTCTGAGTGTTAAG 1674
| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 904 AAGAAGCATTTGACTGAACTGGTGAAGCAGGGAAAGATTCTGAGTTTTAAG 954
Score = 143 bits (77), Expect = 7e-33
Identities = 128/151 (85%), Gaps = 10/151 (7%)
Strand=Plus/Plus
Query 478 GTTGGTGATGATGTTTCTGATATGGAATACTTCAAGAGTCGGATATATGGAATA-CT-TC 535
||||||||||||||||||||||||||||||| ||||||||||| | | | || | || ||
Sbjct 418 GTTGGTGATGATGTTTCTGATATGGAATACTACAAGAGTCGGACAAA-GAAAAATCTGTC 476
Query 536 AAGAT--G-AT--T-ATTATGAAACTGATAGTCGTGAAGATGCAATTCATGCTTTTCCTA 589
||| | | | ||| ||||||| || || |||||||||||||||||| ||||||||
Sbjct 477 G-GATTCGGACAGTGATTGTGAAACTTATGGTTGTGAAGATGCAATTCATGTTTTTCCTA 535
Query 590 TTGATGGAGATATTGAAGCTGACAGAGTTGA 620
||||||| |||||||||||||||||||||||
Sbjct 536 TTGATGGGGATATTGAAGCTGACAGAGTTGA 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103061718885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5