BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349845
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05770.1 | Symbols: WOX7 | WUSCHEL related homeobox 7 | chr5... 475 2e-133
AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 | chr3... 178 6e-44
> AT5G05770.1 | Symbols: WOX7 | WUSCHEL related homeobox 7 | chr5:1734487-1734855
FORWARD LENGTH=369
Length=369
Score = 475 bits (257), Expect = 2e-133
Identities = 321/352 (91%), Gaps = 4/352 (1%)
Strand=Plus/Plus
Query 1 ATGTCGTCGAGAGGATCCACCATTAAAGGTAGAGGATTATGTAATAACAATAACGGAGGA 60
|||||||||||||||| || |||||||| ||||||||||||||||||||| |||||||||
Sbjct 1 ATGTCGTCGAGAGGATTCAACATTAAAGCTAGAGGATTATGTAATAACAACAACGGAGGA 60
Query 61 GGGACGG--CCGGGACAAAGTGTGGACGGTGGAATCCGACGGTGGAGCAAGTGAAGCTTC 118
||| || | ||| | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 -GGA-GGAACGGGGGCGAAGTGTGGACGGTGGAATCCAACGGTGGAGCAAGTGAAGCTTC 118
Query 119 TGACGGATCTGTTCAAGGCGGGGCTACGAACACCGAGCACGGATCAGATTCAGAAGATCT 178
|||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 119 TGACAGATCTGTTCAAGGCGGGACTGCGAACACCGAGCACGGACCAGATTCAGAAGATCT 178
Query 179 CTACGGAGCTAAGTTTCTACGGTAAGATTGAGAGCAAGAACGTGTTCTATTGGTTCCAAA 238
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CTATGGAGCTGAGTTTCTACGGTAAGATTGAGAGCAAGAACGTGTTCTATTGGTTCCAAA 238
Query 239 ACCATAAAGCTAGAGAGAGACAAAAGCGCCGCAGAATCTCCACCGTGGATTTTGACCATC 298
|||||||||||||||||||||||||| |||| | |||||||||||| | ||||| ||||
Sbjct 239 ACCATAAAGCTAGAGAGAGACAAAAGTGCCGGAAAATCTCCACCGTCAAGTTTGATCATC 298
Query 299 GTCAAGACACAGATCTTTCTAGGCCTTACCGAGACAACCTACGTCGTCGTCA 350
||||||| ||||||||||||| |||| |||||||||| ||||||||| |||
Sbjct 299 GTCAAGATACAGATCTTTCTAAGCCTCGCCGAGACAACGTACGTCGTCATCA 350
> AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 | chr3:3527575-3528433
FORWARD LENGTH=750
Length=750
Score = 178 bits (96), Expect = 6e-44
Identities = 212/264 (80%), Gaps = 23/264 (9%)
Strand=Plus/Plus
Query 46 AACAATAACGGAGGAGGGACGGCCGGGACAAAGTG-TGGACGGTGGAATCCGACGGTGGA 104
||||||||||||||| || | ||||| ||||| ||| | |||||||| ||||||||
Sbjct 68 AACAATAACGGAGGA---AC-G--GGGACGAAGTGCGGGA-GATGGAATCCAACGGTGGA 120
Query 105 GCAAG-TGAAGCT-TCTGACGGATCTG-TTCAAGGCGGGGC-TACGAACACCGAGC-ACG 159
|| || ||||| | | |||| |||||| ||| | || || | || |||| || | | ||
Sbjct 121 GC-AGTTGAAGATAT-TGACTGATCTGTTTCGA-GCCGGTCTTA-GAACTCC-AACAACT 175
Query 160 GATCAGATTCAGAAGATCTCTACGGAGCTAAGTTTCTACGGTAAGATTGAGAGCAAGAAC 219
||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 176 GATCAGATTCAGAAGATCTCTACGGAGCTCAGTTTCTACGGCAAGATAGAGAGCAAGAAT 235
Query 220 GTGTTCTATTGGTTCCAAAACCATAAAGCTAGAGAGAGACA-AAAGCGCCGCAGAATCTC 278
|| ||||||||||| || || ||||| ||||| ||||| || ||| || || | ||||||
Sbjct 236 GTTTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAGGCAGAAA-CGTCGTAAAATCTC 294
Query 279 CACCGTGGATTTTGACCATCGTCA 302
|| || ||||||| |||| |||
Sbjct 295 CAT--TG-ATTTTGATCATCATCA 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27980419879
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5