BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349873
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06090.1 | Symbols: ATGPAT7, GPAT7 | glycerol-3-phosphate ac... 2307 0.0
> AT5G06090.1 | Symbols: ATGPAT7, GPAT7 | glycerol-3-phosphate
acyltransferase 7 | chr5:1835106-1836722 FORWARD LENGTH=1503
Length=1503
Score = 2307 bits (1249), Expect = 0.0
Identities = 1420/1504 (94%), Gaps = 5/1504 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTCATCGACT---ACATCGTATTCAGTTGTGTCGGAGCTAGAAGGAACACTACTG 57
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGTCATCAACTACAACATCGTATTCAGTTGTGTCGGAGCTAGAAGGAACACTACTG 60
Query 58 AAAAACCCAAAACCCTTCGCTTACTTCATGCTCGTAGCTTTCGAGGCTTCAGGACTAATC 117
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAAACCCAAAACCCTTCGCCTACTTCATGCTCGTAGCTTTCGAGGCTTCAGGACTAATC 120
Query 118 CGTTTTGCGACCTTGCTGTTTCTCTGGCCTATCATAGCACTCCTTGACGTTTTGGGCTAC 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTTTTGCGACCTTGCTGTTTCTCTGGCCTATCATAGCACTCCTTGACGTTTTGGGCTAC 180
Query 178 AGAAACGGTAGCCTTAAGTTAATGATCTTCGTCGCAACGGCCGGTTTGCACGAATCAGAG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGAAACGGTAGCCTTAAGTTAATGATCTTCGTCGCAACGGCCGGTTTGCACGAATCAGAG 240
Query 238 ATTGAATCAGTGGCTCGAGCCGTTCTTCCCAAATTCTACATGGACGATGTCAGCATGGAC 297
|||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||
Sbjct 241 ATTGAATCAGTGGCTCGAGCGGTTCTTCCCAAATTCTTCATGGACGATATCAGCATGGAC 300
Query 298 GCTTGGAAAGCGTTTGGTTCCTGCGATAAGAGAGTCGTTCTGACAAGAATGCCACGAGTT 357
||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 301 GCTTGGAGGGCGTTTGGTTCGTGCGATAAGAGAGTCGTTGTGACAAGAATGCCACGAGTT 360
Query 358 ATGGTTGAGAGATTCGCCAAGGACCATCTTAGAGCCGATGAGGTCATCGGTACGGAGATT 417
||||| ||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 361 ATGGTGGAGAGATTCGCTAAGGATCATCTTAGCGCCGATGAGGTCATCGGTACAGAGATT 420
Query 418 GTCGTAAACCGTTTTGGTTATGCTACTGGTTTAATTCAAGAAACCAATGTGGACCAATCT 477
|||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 421 GTCGTAAACCGTTTCGGTTATGCTACCGGTTTGATTCAGGAAACCAATGTGGACCAATCT 480
Query 478 GTTTTCAACAGTGTGGCTAACTTGTTTGTTGATCGAAGACCTCAACTAGGTCTAGGACGA 537
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 481 GTTTTCAACAGTGTGGCTAACTTGTTTGTGGATCGGAGACCTCAACTAGGTCTAGGACGA 540
Query 538 CAGATTACCTCGGATTCTCCTACTTTCCTATCGTTATGTGAGGAGCAAGTTCATGCACCG 597
|| |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 541 CATATTATCTCGGATTCTCCAACTTTCCTATCTTTATGTGAGGAGCAAGTTCATGCACCA 600
Query 598 GTTCCATCAAACTACAACGGTCATATCCAGCGGCTACATGTGCAGCCGTTACCGGTTATT 657
|||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 601 GTTCCATCGAACTACAACGGTCATAACCAGCGGCTACATGTGCAGCCGTTACCAGTTATC 660
Query 658 TTCCACGATGGACGACTTGTGAAGCTGCCGACACCAGCCACCGCACTTC-TCATCCTTCT 716
|||||||||||||||||||||||||| || ||||||||||||||||| | ||||||||||
Sbjct 661 TTCCACGATGGACGACTTGTGAAGCTACCAACACCAGCCACCGCACT-CATCATCCTTCT 719
Query 717 TTGGATCCCCTTCGGTATAATCCTGGCCGTGATTCGGATCTTCGTTGGGTTCTTGCTCCC 776
|||||||||||| || ||||| || ||| |||||||||| |||||||||||||| || ||
Sbjct 720 TTGGATCCCCTTTGGAATAATTCTAGCCATGATTCGGATATTCGTTGGGTTCTTACTTCC 779
Query 777 ATTATGGGCCATACCTTACGTCTCACGGATATTCAACACTCGATTCATCGTAAAAGGAAA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATTATGGGCCATACCTTACGTCTCACGGATATTCAACACTCGATTCATCGTAAAAGGAAA 839
Query 837 GCCTCCGGCACCAGCAACCCCCGGAAAACCAGGCGTACTATTCGTATGCACTCATAGAAC 896
||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 GCCTCCGGCACAAGCAACCACCGGAAACCCAGGCGTACTATTCGTATGCACTCATAGAAC 899
Query 897 CCTAATGGATCCGGTCGTATTATCCTATGTACTCGGACGTAGCATCCCAGCCGTTACCTA 956
||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 900 TCTAATGGATCCGGTCGTATTATCCTATGTGCTCGGACGTAGCATTCCAGCTGTTACCTA 959
Query 957 CTCCATTTCTCGATTATCCGAGATTCTATCTCCGATTCCAACCTTCAGGTTAACTAGAAT 1016
||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 960 CTCTATTTCTCGTTTATCCGAGATCCTATCTCCGATTCCAACCTTTAGGTTAACTAGAAT 1019
Query 1017 TCGAGATGTTGACGCCGAGATGATCAAGAAAGAACTGTCTAATGGGGACTTAGTGGTATA 1076
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TCGAGATGTAGATGCGGAGATGATCAAGAAAGAACTGTCTAATGGGGACTTAGTGGTATA 1079
Query 1077 TCCGGAGGGAACCACTTGTCGCGAGCCATTTTTGCTGAGATTTAGTGCTCTTTTCGCAGA 1136
||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 1080 TCCCGAGGGAACCACTTGTCGCGAGCCGTTTTTGCTGAGATTTAGCGCGCTTTTCGCAGA 1139
Query 1137 ATTAACGGACAATATTGTGCCAGTGGCAATGAACTATAGAGTAGGATTCTTTCATGCGAC 1196
|||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 1140 ATTAACCGACAATATTGTGCCCGTGGCAATGAACTACAGAGTTGGATTCTTTCATGCGAC 1199
Query 1197 TACTGCTAGAGGCTGGAAAGGTTTAGACCCCATCTTCTTTTTCATGAACCCGAGACCGGT 1256
||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1200 TACCGCTAGAGGCTGGAAAGGTTTGGACCCGATCTTCTTTTTCATGAACCCGAGACCGGT 1259
Query 1257 TTATGAGGTGACGTTCTTGAACCAGCTCGAAGTGGAGGCTACGTGTTCGTCAGGGAAGAG 1316
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1260 TTATGAGGTGACGTTCTTGAACCAGCTCGAGGTGGAGGCGACGTGTTCGTCAGGGAAGAG 1319
Query 1317 CCCTTATGACGTGGCCAACTATGTACAGAGAATCTTGGCCGCTACGTTAGGCTTTGAGTG 1376
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1320 CCCTTATGACGTGGCTAACTATGTACAGAGAATCTTGGCAGCTACGTTAGGCTTTGAGTG 1379
Query 1377 TACTAACTTCACGAGGAAGGATAAGTACAGAGTTCTCGCAGGAAACGACGGAACCGTGTC 1436
||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1380 TACTAACTTTACGAGGAAGGATAAGTATAGAGTTCTCGCAGGGAACGACGGAACCGTGTC 1439
Query 1437 GTACTTGTCATTTCTCGACCAAGTCAAGAAGGTCATCACCACATTCAAGCCTTTCTTCCA 1496
||| ||||| |||||||| ||||||||||||||| ||||||| ||||| ||||| || ||
Sbjct 1440 GTATTTGTCGTTTCTCGATCAAGTCAAGAAGGTCGTCACCACTTTCAAACCTTTTTTGCA 1499
Query 1497 TTAA 1500
||||
Sbjct 1500 TTAA 1503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73995603330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5