BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349878
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06140.1 | Symbols: SNX1, ATSNX1 | sorting nexin 1 | chr5:18... 1980 0.0
> AT5G06140.1 | Symbols: SNX1, ATSNX1 | sorting nexin 1 | chr5:1856008-1858785
REVERSE LENGTH=1446
Length=1446
Score = 1980 bits (1072), Expect = 0.0
Identities = 1167/1213 (96%), Gaps = 5/1213 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAGCACGACGGAGCAGCCGAGGAACATCTCGGGATCGATGCAGAGCCCTAGATCT 60
|||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 34 ATGGAGAG--C-ACGGAGCAGCCGAGGAACATCTCCGGATCGATGCAGAGCCCTAGATCT 90
Query 61 CCGTCTCCGCAGCCGTATTTGTCAGTCTCCGTCACAGATCCCGTCAAATTAGGCAATGGC 120
|||||| |||| |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 91 CCGTCTTCGCATCCGTATCTGTCAGTCTCCGTCACAGATCCTGTCAAATTAGGCAATGGC 150
Query 121 GTACAAGCTTATATCTCTTACAGAGTTATCACCAAGACCAACTTGCCGGAGTATCAAGGA 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 151 GTACAAGCTTATATCTCTTACAGAGTTATCACCAAGACTAACTTGCCGGAGTACCAAGGA 210
Query 181 CCTGAGAAGATTGTTATCAGACGATACAGTGATTTCGTCTGGTTACGGGATCGGCTTTTT 240
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 CCCGAGAAGATTGTTATTAGACGATACAGTGATTTCGTCTGGTTACGGGATCGGCTTTTT 270
Query 241 GAGAAA-TACAAGGGCATTTTCATTCCTCCTCTTCCAGAGAAGAGTGCTGTAGAAAAATT 299
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 GA-AAAGTACAAGGGCATTTTCATTCCTCCTCTTCCAGAGAAGAGTGCTGTAGAAAAATT 329
Query 300 CCGCTTTAGTGCCGAATTTATTGAAATGAGGCGAGCAGCATTGGATATATTTGTTAATCG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 CCGCTTTAGTGCCGAATTTATTGAAATGAGGCGAGCAGCATTGGATATATTTGTTAATCG 389
Query 360 AATAGCATTACACCCTGAGCTTCAGCAGAGTGAGGATCTTAGGACCTTTTTGCAAGCAGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 AATAGCATTACACCCTGAGCTTCAGCAGAGTGAGGATCTTAGGACCTTTTTGCAAGCAGA 449
Query 420 TGAAGAGACAATGGACAGATTCAGGTTTCAGGAAACTGGTATATTCAAGAAGCCTGCAGA 479
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 450 TGAAGAGACAATGGACAGATTCAGGTTTCAGGAAACTAGTATATTCAAGAAGCCTGCAGA 509
Query 480 TCTTATGCAAATGTTTAGGGATGTCCAGTCAAAAGTTAGTGATGCTGTCCTTGGAAAGGA 539
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 510 TCTAATGCAAATGTTTAGGGATGTCCAGTCAAAAGTTAGTGATGCTGTCCTTGGAAAAGA 569
Query 540 AAAACCTGTTGAAGAAACTACTGCTGACTACGAAAAGCTTAAGCATTACATTTTCGAGCT 599
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 570 AAAACCTGTTGAAGAAACTACTGCTGACTACGAGAAGCTTAAACATTACATTTTCGAGCT 629
Query 600 TGAGAACCACTTGGCTGAGGCTCAGAAGCATGCATATCGCCTTGTCAAGAGGCATAGAGA 659
||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 630 TGAGAACCACTTGACTGAGGCTCAGAAGCATGCGTATCGCCTAGTCAAGAGGCATAGAGA 689
Query 660 GTTGGGTCAATCACTGTTGGATTTTGGCAAAGCTATAAAACTTCTTGGGGCTTGTGAGGG 719
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 690 GTTGGGTCAATCACTGTTGGATTTTGGCAAGGCTGTAAAACTTCTTGGGGCTTGTGAGGG 749
Query 720 TGAACCTACAGGAAAAGCATTTTCCGATCTTGGAACTAAATCTGAACTGTTATCAATTAA 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 750 TGAACCTACAGGAAAAGCATTTTCCGATCTTGGAACTAAATCTGAACTGTTATCGATTAA 809
Query 780 GCTCCAAAAAGAGGCTCAACAAGTCCTGATGAACTTCGAGGAACCTTTGAAGGACTATGT 839
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 810 GCTCCAGAAAGAGGCTCAACAAGTCCTGATGAACTTCGAGGAACCCTTGAAGGACTATGT 869
Query 840 TCGTTATGTGCAATCAATTAAAGCAACAATTGCAGAGCGAGGCACTGCTTTCAAGCAACA 899
||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||||| |||||
Sbjct 870 TCGTTATGTACAATCGATTAAGGCAACAATAGCAGAACGAGGCACTGCTTTCAAACAACA 929
Query 900 TTGTGAATTGGCAGAAACAACGAAGTTAAAAGAAATAAATCTTGACAAACTCATGCTCAC 959
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 930 TTGTGAATTGTCAGAAACAACAAAGTTAAAAGAAATAAATCTTGACAAACTCATGCTCAC 989
Query 960 ACGTTCAGACAAAGTAGGAGAAGCTGAGATCGAATACAGAGAGATAAAAGCAGAAAGTGA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 ACGTTCAGACAAAGTAGGAGAAGCTGAGATCGAATACAGAGAGATAAAAGCAGAAAGTGA 1049
Query 1020 AGAAGCTACGAGAAGATTTGAGAGGATAGTGAAGAGAATGGAGGAGGAGATAGTAAGGTT 1079
||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 1050 GGAAGCCACGAGAAGATTTGAGAGGATAGTAAAGAGAATGGAAGATGAGATAGTAAGGTT 1109
Query 1080 TCAAGAGCAGAAGACAGAAGAGATGGGAGTCGCATTCCATCAGTTTGCGAAAGGACAAGC 1139
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1110 TCAAGAGCAGAAGACGGAAGAGATGGGAGTGGCATTCCATCAGTTTGCGAAAGGACAAGC 1169
Query 1140 TCGCTTAGCAAACAGTGTCGCAGATGCTTGGAGATCCCTTCTTCCCAAACTTGAAGCTTC 1199
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1170 TCGCTTAGCAAACAGTGTCGCGGATGCTTGGAGATCCCTTCTTCCCAAACTTGAAGCTTC 1229
Query 1200 TGCTACTGTCTAA 1212
| | ||||||||
Sbjct 1230 TTATTCTGTCTAA 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5