BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg349912

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G06480.1 | Symbols:  | Immunoglobulin E-set superfamily prot...   649    0.0  


> AT5G06480.1 | Symbols:  | Immunoglobulin E-set superfamily protein 
| chr5:1976086-1977290 REVERSE LENGTH=654
Length=654

 Score =  649 bits (351),  Expect = 0.0
 Identities = 428/465 (92%), Gaps = 6/465 (1%)
 Strand=Plus/Plus

Query  1    ATGTCGAGGATCATCGCCATTCTT-CT-TCTC-GCTATTTCTCTTCTCCTCTTTGTTTCA  57
            |||||||||||| ||||||||||| || || | ||| ||| |||||||||| ||||||||
Sbjct  60   ATGTCGAGGATCTTCGCCATTCTTCCTCTCGCTGCTGTTTTTCTTCTCCTCCTTGTTTCA  119

Query  58   CCGATTGTGCAAGCCATTGATGTCCATTACTGTGAAGAGAACGCAAAGTATGAAGTAAAA  117
            ||||||||   |||||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct  120  CCGATTGT---AGCCATCGATGTCCATTACTGTGAAGAGAACGCAGAGTATGAAGTTAAA  176

Query  118  GTGAAAGAGGTTGATATATCTCCTAACCCTATTGCCCCAGGCGAGCCAACTACTTTCACC  177
            |||||||||||||||||||||||||| ||||| || |||||||||||| |||||||||||
Sbjct  177  GTGAAAGAGGTTGATATATCTCCTAATCCTATAGCACCAGGCGAGCCAGCTACTTTCACC  236

Query  178  ATCTCTGCCAACACAGGCCATGAGATTTCGTTTGGTAAGCTCGTGATTGAAGTTTCGTAC  237
            ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| |||
Sbjct  237  ATCTCTGCCAACACAGGCCGTGAGATTTCGTTTGGGAAGCTGGTGATTGAAGTTTCATAC  296

Query  238  TTTGGATGGCATGTTCACTCGGAGACTCATGACCTCTGTACTGAGACTACTTGTCCTATA  297
            |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct  297  TTTGGATGGCATGTTCACTCTGAGACTCATGACCTCTGCACTGAGACTAGTTGTCCTATA  356

Query  298  CAAACTGGAGATTTCTTGGTTGCACACTCTCAAGTTCTTCCTGGTTATACTCCTCATGGT  357
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  357  CAAACCGGAGATTTCTTGGTTGCACACTCTCAAGTTCTTCCTGGTTATACTCCTCCTGGT  416

Query  358  ACATACTCGCTGAAAATGAAGATGCTTGATGCGCAGAAGAAGGAGCTAACATGCATTAAA  417
             |||||| ||||||||||||||||||||||||  ||||||||||| |||||||||| |||
Sbjct  417  TCATACTTGCTGAAAATGAAGATGCTTGATGCAAAGAAGAAGGAGTTAACATGCATCAAA  476

Query  418  TTCGCGTTCGACATTGGACTCAGATCATCGGTGGCTGATATTTAG  462
            ||| |||||||||||||||||||| |||| |||||||| ||||||
Sbjct  477  TTCTCGTTCGACATTGGACTCAGAGCATCTGTGGCTGACATTTAG  521



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5