BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349916
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06520.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 1803 0.0
> AT5G06520.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein | chr5:1987250-1989372 REVERSE
LENGTH=2040
Length=2040
Score = 1803 bits (976), Expect = 0.0
Identities = 1451/1670 (87%), Gaps = 74/1670 (4%)
Strand=Plus/Plus
Query 2 TGGATATGCCTAAGC---CTCCACCTATCAAGTTCGCATACCTTCCTCTAGGGATCACGA 58
||||||||||| || |||||||| |||| ||| || |||||||||||||||||||
Sbjct 194 TGGATATGCCTCTGCTGGCTCCACCTGTCAACTTCTCACACCTTCCTCTAGGGATCACTT 253
Query 59 TCACGCGCAAGGAGGTTGATATTATCAAGCTCACAGCGCAGTTTGTGGCTGTTTATGGGA 118
||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 254 TCACGCGAAAGGAGCTTGAGCTTATCAAGCTCACAGCGCAGTTTGTGGCTGTTTATGGGA 313
Query 119 AGTATTTTCGGCGCGAATTGACGATGAGAG-TGTTTGGGAATCCTCTGTTTGAGTTTATG 177
||||||||| | | ||| |||||| ||||| || ||| || |||||||||||||||| ||
Sbjct 314 AGTATTTTCAGAGGGAACTGACGACGAGAGTTG-TTGAGAGTCCTCTGTTTGAGTTTTTG 372
Query 178 AAGCCAACTGACAGCAGGAACCGTTTTTACACGGGGCTTATTCTCGGGTATTC-GAGTGT 236
|| ||||||||||| |||||| ||||||||||| || ||||||||||||| || | ||||
Sbjct 373 AAACCAACTGACAGTAGGAACAGTTTTTACACGCGGATTATTCTCGGGTA-TCAGGGTGT 431
Query 237 GTTAATGCCTTCCCAAAAGCTGAAGACGAAGAGTGATAGTACGAGGGAAGTTTTTGATGC 296
|||||||||||||||||||||||||||| | | | ||| |||||||||||||
Sbjct 432 GTTAATGCCTTCCCAAAAGCTGAAGACG-A-A--G--AGT------GAAGTTTTTGATGG 479
Query 297 TTTCTCCCAGCTTCTTGCTCAAGTGCCTGAAAAGGAGGAGGATGGA-GTGGAGATTGCTT 355
||||||| ||||| ||||||||||||||| |||||| |||||| || |||||||| |||
Sbjct 480 TTTCTCCAAGCTTATTGCTCAAGTGCCTGTAAAGGATGAGGAT-GACGTGGAGATGGCTA 538
Query 356 TGACTGATTTGCATGCTTATGAGTATTTTGCTAACATGT---TT-CTG-TCT-CG-GTCT 408
|||||||||||||||||||||| || ||||||||||||| || || | | || | ||
Sbjct 539 TGACTGATTTGCATGCTTATGAATACTTTGCTAACATGTCCATTAATGATTTACGAG-CT 597
Query 409 CC-ACT--TGTCAAGTTCCCATTCTTTCCTAAAGGGATAACGATCACGCGCAAGGAGATT 465
|| || ||||||||| ||||| || ||| |||| ||||| |||||||||| ||| ||
Sbjct 598 CCGGCTCCTGTCAAGTTTGCATTCCTTACTAGAGGGGTAACGTTCACGCGCAATGAGCTT 657
Query 466 GATATTATAAAGCTCACAGCGCAGTTTGTGGCTGTGTATGGGA-AGTATTTTCGGGTGGA 524
|||| ||| ||||||||||| ||||||||||| || ||||||| | ||||||| ||
Sbjct 658 GATACTATTAAGCTCACAGCACAGTTTGTGGCAGTTTATGGGACCCT-TTTTCGGACAGA 716
Query 525 ATTGATGAAGAAAGTGGTAATGAA-CCCTCAGTTTGAGTTTGTGAAGTCAACTGATAGCA 583
||||||||||| |||| | || || |||| | ||||| ||| | ||||||||||||||||
Sbjct 717 ATTGATGAAGAGAGTGTTTAT-AAGCCCTAAATTTGACTTTTTTAAGTCAACTGATAGCA 775
Query 584 AGTACTCTTTTTACAAT-AGGCTTGTTGATGGGTTTTCGAGGGTGTTTAA-GCGTTCCAT 641
||| |||||||||| | ||||||||||||||| |||||| ||| |||| ||||||||
Sbjct 776 AGTGCTCTTTTTAC-TTGCGGCTTGTTGATGGGTATTCGAGAGTG-TTAAGGCGTTCCAG 833
Query 642 TAAGAATGGTGCTGGTTTGGGGGAAGTTCTTGATGGTTTTTTCAAGCTTCTTGATCAAGC 701
||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct 834 AAAGAATGGTGCTGGTTTGGGGGAAGTTGTTGTTGGTTTTCTCAAGCTTCTTGATCAAGT 893
Query 702 TCTTGAAAAGCAGGAGGGAGTGGAGATGGCTATGACTGATTTGCATGCTTTCGAGTTTTT 761
| |||||||| | || | ||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 894 TGTTGAAAAGAAAGATGCAGTGGAGATGGCTTTGACTGATTTGCATGCTTTAGAGTTTTT 953
Query 762 TGCTAACGTGGA-GGATGACGTGTTGCAACCACTACCTGAACAATACCTTCCAATGATGA 820
|||||||||||| || || |||||||||||||| |||||||||||||| ||| | |
Sbjct 954 TGCTAACGTGGACGG-TGGCGTGTTGCAACCACGACCTGAACAATACCATCC----A--A 1006
Query 821 TGATGCCGCCACTACCACCTCTAATTCTGCGTCCACTTGGATCTCAGTTTACTCATCTTC 880
||||||| || ||||||| |||||| ||| || ||| ||||||||||||||||| ||||
Sbjct 1007 TGATGCCAACAGTACCACCGCTAATTATGCCTCAACTGGGATCTCAGTTTACTCAACTTC 1066
Query 881 AAG---GT----C--C---TTCT-C-ACA-TGATGA-AACCTACACCACCTCGGCCACAG 924
||| | | | |||| | || ||| || | | |||| ||| ||||||||
Sbjct 1067 AAGTTCCTCAACCTTCATGTTCTCCTCCAGTGAGGATGATGT-CACCTCCTAGGCCACAG 1125
Query 925 AATGATTTGCAATCGGGTCAAAACAATTCAAATAAAGCTCCTGCGAGTGTGGCAACTATT 984
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1126 AATGATTTGCAATCGGGTCAAAGCAATTCAAATAAAGCTCCTGCGAGTGTGGCACCTATT 1185
Query 985 GAGCCACCTCCAGAAATCAGAAATTTTATCCAGAAGACTGCAC-TATTTGTTTCCAAAAA 1043
|||||||||||||||||||||| || | || |||| ||||||| || |||||||||||||
Sbjct 1186 GAGCCACCTCCAGAAATCAGAAGTTGTGTCGAGAACACTGCACTTA-TTGTTTCCAAAAA 1244
Query 1044 TGGGTTGGAGACTGCAAGAAGGTTCATGGAACTTAGTATGAATGATACAAGATACAGATT 1103
||||||||||| || ||||| | | ||||||||||||||||||||| ||||| |||||||
Sbjct 1245 TGGGTTGGAGATTGAAAGAAAGATGATGGAACTTAGTATGAATGATGCAAGACACAGATT 1304
Query 1104 TGTGTGGAGCACTCACCCTTATCACGCATTTTATCAGCTTAAGCTTGCAGAATACTGTGC 1163
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1305 TGTGTGGAGCACTGACCCTTATCACGCATTTTATCAGCTCAAGCTTGCAGAATACCGTGC 1364
Query 1164 TCAGAATCAAGATAGAGCTCAGGATATCCAACCTAATGTTCTGAGATCTTTCGGTGTTGG 1223
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1365 TCAGAATCAAGATAGAGCTCACGATATCCAACCTAATGTTCTGAGATCTTTCGGTTTTGG 1424
Query 1224 ATTTGAATTCCCTGAAAAGGAGATCACACTCAAGGAGCTTGGTATTATTAAGCTCACAGC 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 ATTTGAATTCCCTGAAAAGGAGATCACACTCAAGGAGCTTGGTATTATTAAGCTCACAGC 1484
Query 1284 GCAGTTTATGGCGCGGTACGGGATGAATTTCGTGC-GGGATTTGAAGAAGATAGTGGTTG 1342
||||||||||||||||||||||||||||| |||| ||| ||||| ||||| ||||||||
Sbjct 1485 ACAGTTTATGGCGCGGTACGGGATGAATTTTGTGCAGGG-TTTGAGGAAGAGAGTGGTTG 1543
Query 1343 AGAACCCTAAGTTTGAGTTTTTGGAGTCAACTAGTA---GCAGGTTCAGTTTTTACAATA 1399
||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||
Sbjct 1544 GGAACCCTCAGTTTAAGTTTTTGGAGTCAACTAATAATAGCAGGTTCAGTTTTTACAATG 1603
Query 1400 GGCTTGTTATTGCGTATTCAAGGGTATTAATGCCTTCCAAAATGCTGAGCAAGAGTGATG 1459
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1604 GGCTTGTTATTGCGTATTCAAGGGTTTTAATGCCTTCCAAAATGCTGAGCAAGAGTGATG 1663
Query 1460 ATTTTACGGCGACTGTTCTTGATGGTTTTTTCCA-TTGTCTTCAATTGGAAAAGCAAGAG 1518
||| ||||||||| ||| ||||||||||| || | |||||||||||||||||||| ||||
Sbjct 1664 ATTGTACGGCGACCGTTGTTGATGGTTTTCTC-AGTTGTCTTCAATTGGAAAAGCGAGAG 1722
Query 1519 GAGGGAGTGGATATGGCCATGATTGATTTGCTTGACTATTTTGCTAGTTTGGAGGATGAA 1578
|||||||||||||| | ||||||||||||||||||| ||||||| |||||||||||| |
Sbjct 1723 GAGGGAGTGGATATTGATATGATTGATTTGCTTGACTGTTTTGCTCGTTTGGAGGATGCA 1782
Query 1579 GACTATTCTGCTAACGTGCTACAACCTCAACACCTTTCAACACAAATGCA 1628
||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1783 GACTATTCTGCTAACGTCCCACAACCTCAACACCTTTCAACACAAATGCA 1832
Score = 182 bits (98), Expect = 1e-44
Identities = 293/384 (76%), Gaps = 25/384 (7%)
Strand=Plus/Plus
Query 396 TCTGTCTCGGTCTCCACTTGTCAAGTTCCCATTCTTTCCTAAAGGGATAACGATCACGCG 455
|||| || || |||||| |||||| ||| || | ||||| |||||| || |||||||
Sbjct 204 TCTG-CT-GG-CTCCACCTGTCAACTTCTCACACCTTCCTCTAGGGATCACTTTCACGCG 260
Query 456 CAAGGAGATTGATATTATAAAGCTCACAGCGCAGTTTGTGGCTGTGTATGGGAAGTATTT 515
|||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 261 AAAGGAGCTTGAGCTTATCAAGCTCACAGCGCAGTTTGTGGCTGTTTATGGGAAGTATTT 320
Query 516 TC-GGGTGGAATTGATGAAGAAAG-TGGTAATGAACCCTCAGTTTGAGTTTGTGAAGTCA 573
|| | | |||| ||| || || || || | | || |||| |||||||||| |||| ||
Sbjct 321 TCAGAG-GGAACTGACGACGAGAGTTGTTGA-GAGTCCTCTGTTTGAGTTTTTGAAACCA 378
Query 574 ACTGATAGCAAGTACTCTTTTTACAATAGGCTTGTTGAT-GGGTTTTCGAGGGTGT-TTA 631
||||| || | | || |||||||| || || || | ||| | || ||||||| |||
Sbjct 379 ACTGACAGTAGGAACAGTTTTTACACGCGGATTATT-CTCGGG-TATC-AGGGTGTGTTA 435
Query 632 A-GCGTT-CCATTAAGAATGGTGCTGGTTTGGGGGAAGTTCTTGATGGTTTTTTCAAGCT 689
| || || ||| ||| || | | | | |||||| |||||||||| | ||||||
Sbjct 436 ATGCCTTCCCA-AAAG-CTGAAG-ACG-AAGAGTGAAGTTTTTGATGGTTTCTCCAAGCT 491
Query 690 TCTTGATCAAGCT-CTTGAAAAGCAGGAGG--GA-GTGGAGATGGCTATGACTGATTTGC 745
| ||| ||||| | | || |||| | |||| || |||||||||||||||||||||||||
Sbjct 492 TATTGCTCAAG-TGCCTGTAAAGGATGAGGATGACGTGGAGATGGCTATGACTGATTTGC 550
Query 746 ATGCTT-TCGAGTTTTTTGCTAAC 768
|||||| | || | |||||||||
Sbjct 551 ATGCTTAT-GAATACTTTGCTAAC 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83483506335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5