BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349974
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 333 1e-90
> AT5G37010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G65710.1); Has 6746 Blast hits
to 5259 proteins in 486 species: Archae - 7; Bacteria - 485;
Metazoa - 3508; Fungi - 577; Plants - 378; Viruses - 50;
Other Eukaryotes - 1741 (source: NCBI BLink). | chr5:14620732-14622941
REVERSE LENGTH=2097
Length=2097
Score = 333 bits (180), Expect = 1e-90
Identities = 229/252 (91%), Gaps = 6/252 (2%)
Strand=Plus/Plus
Query 185 AGAAGGTGAATCCTGTGATGAATACGAAA-CCTGCTACTCAAGCGCCAATCCGAAGAACC 243
||||| ||||||||||||||||||| ||| | | ||| |||||||||||||||||||||
Sbjct 1126 AGAAGTTGAATCCTGTGATGAATAC-AAAGACGGTTACACAAGCGCCAATCCGAAGAACC 1184
Query 244 GCAAGTCCGAGTCGTGCCATCAAAGAGCAGCAAGAGGGAGTTGAAGGGTGTAAGATAG-G 302
|| || ||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| |
Sbjct 1185 GCGAGCCCGAGTCGTGCCATCAAGGAGCAGCAAGAGGCAGTGGAAGAGTGTAAGATAGTG 1244
Query 303 GTTATCATC-GGTAACTGAATTGGTTGAGCCTCAAATTGTGAGCATGAGCAGATCTTTGA 361
||| ||||| || |||||| |||| | |||| ||||||||||||| ||||||||||||||
Sbjct 1245 GTT-TCATCTGG-AACTGAGTTGGCTAAGCCACAAATTGTGAGCAGGAGCAGATCTTTGA 1302
Query 362 GGAAATCTCGTGATTTCGATTTCAGTCCCGAAGCATTGCTCTCAAACAATATCGACATCA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1303 GGAAATCTCGTGATTTCGATTTCAGTCCCGAAGCATTGCTCTCAAACAATATCGATATCA 1362
Query 422 ACAATGTTAACA 433
||||||||||||
Sbjct 1363 ACAATGTTAACA 1374
Score = 315 bits (170), Expect = 5e-85
Identities = 212/232 (91%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 428 TTA-ACA-CTTTGCTTTTAGAAGACATTCAGAATTTCCATCAGAAGAGTGTTAATGTTAG 485
||| ||| |||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 1409 TTATACAGCTTTGCTTTTAGAAGATATTCAGAATTTCCACCAGAAGAGTGTTAATGTCAG 1468
Query 486 TGCCTTAAGTTCATCTATGTCCAAAGCTTGTTCTATTGTTGAAGCAGTTGCAGATCTTAA 545
||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 1469 TGCGTTAAGTTCATCTATGTCCAAGGCTTGTTCCATTGTCGAAGCAGTTGCAGATCTTAA 1528
Query 546 CTCCACTACAAATCAACATCAAAGAACCGAGGTCAGTTTCACATCCGCAGCAGCGAAGAA 605
||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1529 CTCTGCTACGAATCAACATCAAAGAACCGAGGTCAGTTTCACATCCGCTGCAGCGAAGAA 1588
Query 606 AGTTGATCTAATGGAGCCAAGCTTT-GAGAAGTATGTTACTGTTAAGAGAGG 656
|| ||| |||||||||| || ||| ||||||||||| ||||||||||||||
Sbjct 1589 AGCGGATTTAATGGAGCCGAG-TTTCGAGAAGTATGTGACTGTTAAGAGAGG 1639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34159219960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5