BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349983
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06260.1 | Symbols: | TLD-domain containing nucleolar prote... 219 8e-56
AT4G34070.1 | Symbols: | Calcium-binding EF-hand family protei... 219 8e-56
AT5G07170.1 | Symbols: | Cell cycle regulated microtubule asso... 174 2e-42
AT2G45380.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 172 6e-42
AT2G44850.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 165 1e-39
> AT5G06260.1 | Symbols: | TLD-domain containing nucleolar protein
| chr5:1902599-1905101 REVERSE LENGTH=1697
Length=1697
Score = 219 bits (118), Expect = 8e-56
Identities = 143/155 (92%), Gaps = 1/155 (1%)
Strand=Plus/Plus
Query 409 GTGAGACCTGAATATCAAGTCCCACATCTGCTTTATGAAGATAGTGTGGGCTCAGATAGG 468
|||||||||| |||||||||||| |||||||| ||||||||||||||| | |||||||||
Sbjct 852 GTGAGACCTGGATATCAAGTCCCGCATCTGCTATATGAAGATAGTGTGAGTTCAGATAGG 911
Query 469 CTACTATTAAAAGAAGGAATACGCTTGGCATATTGGAGGGGCTCTTCCTCACCACGAGCT 528
|||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 912 CTACTATT-AAAGAAGGAATACGCTTGGCATATTGGAGGAGCTCTTCCTCACCATGAGCT 970
Query 529 TGAAGAGTGGAAGCTGCTGTATCACTGTTCCTTAC 563
|| ||||||||||||| |||||||| ||||| |||
Sbjct 971 TGTAGAGTGGAAGCTGTTGTATCACAGTTCCGTAC 1005
Score = 178 bits (96), Expect = 1e-43
Identities = 106/111 (95%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 299 TGATTTTGAAGAGTGTGTTCTCCACTGAGAGTTCTGATGCTGAATCAAGTGATTACAAGG 358
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 640 TGATTTTGAAGAGTGTGTTCTCCACTGAGAGTTCTGATGCGGAATCAAGTGATTACAAGA 699
Query 359 AGATGGTGGATGTGCTACTCAATGCCACTACTTCCTCAAAATCTGATGATG 409
|||||||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 700 AGATGGTGGATGCGCTACTCAATGCCGCTACTTTCTCAAAATCTGATGATG 750
Score = 176 bits (95), Expect = 5e-43
Identities = 114/123 (93%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1 ATGGAAAATTCGAATTCGTCTTCTGTTGATCATCACTTCACTTCTGCTTCCAGAGCTTTT 60
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 267 ATGGGAAATTCGAATTCGTCTTCTGTTGATCATCGCTTCATTTCTGCTTCCAGAGCTTTT 326
Query 61 ACTCAGAAGAAGCTCGATGATCTCAAATCACTCTTC-TCTTACCTCGATTCCAAGTCTCA 119
||||||||||||||||||||||||||||| |||||| ||| ||||| |||||| |||||
Sbjct 327 ACTCAGAAGAAGCTCGATGATCTCAAATCTCTCTTCGTCTC-CCTCGCTTCCAATTCTCA 385
Query 120 GAG 122
|||
Sbjct 386 GAG 388
Score = 161 bits (87), Expect = 1e-38
Identities = 99/105 (94%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 558 CCTTACCAAAACGAGCATAATACAGCCAGAAGTGATAGAATGCTGGGGAATCGTTCAGGC 617
|||| |||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1367 CCTTTCCAAGACGAGCAGAATTCAGCCAGAAGTGATAGAATGCTGGGGAATCGTTCAGGC 1426
Query 618 CTCAAACGAACAAGACACCAAACATAACACCATGAAAGGTACTGT 662
|||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1427 CTCAAATGAACAAGACACCAAACATAACGCCATGAAAGGTACTGT 1471
> AT4G34070.1 | Symbols: | Calcium-binding EF-hand family protein
| chr4:16323095-16325295 REVERSE LENGTH=1230
Length=1230
Score = 219 bits (118), Expect = 8e-56
Identities = 143/155 (92%), Gaps = 1/155 (1%)
Strand=Plus/Plus
Query 409 GTGAGACCTGAATATCAAGTCCCACATCTGCTTTATGAAGATAGTGTGGGCTCAGATAGG 468
|||||||||| |||||||||||| ||||||| ||||||||||||||| | |||||||||
Sbjct 766 GTGAGACCTGGATATCAAGTCCCGGATCTGCTATATGAAGATAGTGTGAGTTCAGATAGG 825
Query 469 CTACTATTAAAAGAAGGAATACGCTTGGCATATTGGAGGGGCTCTTCCTCACCACGAGCT 528
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 826 CTACTATT-AAAGAAGGAATACGCTTGGCATATTGGAGGAGCTCTTCCTCACCACGAGCT 884
Query 529 TGAAGAGTGGAAGCTGCTGTATCACTGTTCCTTAC 563
|| ||||||||||||| |||||| | |||||||||
Sbjct 885 TGTAGAGTGGAAGCTGTTGTATCGCAGTTCCTTAC 919
Score = 172 bits (93), Expect = 6e-42
Identities = 109/117 (93%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 6 AAATTCGAATTCGTCTTCTGTTGATCATCACTTCACTTCTGCTTCCAGAGCTTTTACTCA 65
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 186 AAATTCGAATTCGTCTTCTGTTGATCATTGCTTCACTTCTGCTTCCAGAGCTTTTACTCA 245
Query 66 GAAGAAGCTCGATGATCTCAAATCACTCTTCTCTTACCTCGATTCCAAGTCTCAGAG 122
||||||||||| |||||||||||| ||||| | || ||||| |||||||||||||||
Sbjct 246 GAAGAAGCTCGCTGATCTCAAATCTCTCTTTTTTTCCCTCGCTTCCAAGTCTCAGAG 302
Score = 172 bits (93), Expect = 6e-42
Identities = 105/111 (95%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 299 TGATTTTGAAGAGTGTGTTCTCCACTGAGAGTTCTGATGCTGAATCAAGTGATTACAAGG 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 554 TGATTTTGAAGAGTGTGTTCTCCACTGAGAGTTCTGATGCGGAATCAAGTGATTACAAGG 613
Query 359 AGATGGTGGATGTGCTACTCAATGCCACTACTTCCTCAAAATCTGATGATG 409
||||||| |||| ||||||| ||||| |||||| |||||||||||||||||
Sbjct 614 AGATGGTAGATGCGCTACTCGATGCCGCTACTTTCTCAAAATCTGATGATG 664
> AT5G07170.1 | Symbols: | Cell cycle regulated microtubule associated
protein | chr5:2222767-2225098 FORWARD LENGTH=1227
Length=1227
Score = 174 bits (94), Expect = 2e-42
Identities = 157/184 (85%), Gaps = 18/184 (10%)
Strand=Plus/Plus
Query 1093 ACATCAAGCAAATGCGGTGAAGCAATCGATATCAAAGATGAAAACAATCTTCTGAGGGTT 1152
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1060 ACATCAAGCAAATGCGGTGAAGCAATCGATATCAAACATGAAAACAATCTTCTGAGGG-- 1117
Query 1153 TTTAGTTCATTGAAGGAATTTGAAGCTCCAATGGACACAAATTTTCGAGATGAACCCTTT 1212
| ||| | |||||||||||| |||||||||||||||||||||| |||
Sbjct 1118 ---A----ATT-------T--GAAGCTCCAATGAACACAAATTTTCGAGATGAACCATTT 1161
Query 1213 ATTGAATCTCTCAGAAAACTATGTCTCACTTCAGATAATGATTCAGTCGCGGTATTTATA 1272
||||||||||| ||||||||||||||||| ||||||| |||| |||||| |||| |||||
Sbjct 1162 ATTGAATCTCTTAGAAAACTATGTCTCACGTCAGATACTGATCCAGTCGGGGTACTTATA 1221
Query 1273 GATT 1276
||||
Sbjct 1222 GATT 1225
> AT2G45380.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: inflorescence meristem,
flower, cultured cell; EXPRESSED DURING: petal differentiation
and expansion stage; BEST Arabidopsis thaliana protein
match is: Calcium-binding EF-hand family protein (TAIR:AT4G34070.1);
Has 171 Blast hits to 170 proteins in 31 species:
Archae - 2; Bacteria - 0; Metazoa - 68; Fungi - 0; Plants
- 94; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
| chr2:18699428-18703093 REVERSE LENGTH=1645
Length=1645
Score = 172 bits (93), Expect = 6e-42
Identities = 108/115 (94%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 6 AAATTCGAATTCGTCTTCTGTTGATCATCACTTCACTTCTGCTTCCAGAGCTTTTACTCA 65
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 294 AAATTCGAATTCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCTTTTACTCA 353
Query 66 GAAGAAGCTCGATGATCTCAAATCACTCTTCTCTTACC-TCGATTCCAAGTCTCA 119
|||||||||||||||||||||||| ||||| | || || ||| ||||||||||||
Sbjct 354 GAAGAAGCTCGATGATCTCAAATCTCTCTT-TGTTTCCCTCGCTTCCAAGTCTCA 407
> AT2G44850.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0565 (InterPro:IPR018881);
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT2G45380.1); Has 138 Blast hits to 138 proteins
in 53 species: Archae - 0; Bacteria - 0; Metazoa - 73;
Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink). | chr2:18498672-18500823 FORWARD LENGTH=1203
Length=1203
Score = 165 bits (89), Expect = 1e-39
Identities = 106/114 (93%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 7 AATTCGAATTCGTCTTCTGTTGATCATCACTTCACTTCTGCTTCCAGAGCTTTTACTCAG 66
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 76 AATTTGAATTCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCTTTTACTCAG 135
Query 67 AAGAAGCTCGATGATCTCAAATCACTCTTCTCTTACC-TCGATTCCAAGTCTCA 119
||||||||||||||||||||||| ||||| | || || ||| ||||||||||||
Sbjct 136 AAGAAGCTCGATGATCTCAAATCTCTCTT-TGTTTCCCTCGCTTCCAAGTCTCA 188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5