BLAST Search Results


BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg349990

Length=1254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G26300.1 | Symbols: emb1027 | Arginyl-tRNA synthetase, class...   577    1e-163
  AT1G66530.1 | Symbols:  | Arginyl-tRNA synthetase, class Ic | c...   564    8e-160
  AT4G26288.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   161    1e-38 
  AT2G02430.1 | Symbols:  | pseudogene, arginyl-tRNA synthetase |...  69.4    8e-11 


> AT4G26300.1 | Symbols: emb1027 | Arginyl-tRNA synthetase, class 
Ic | chr4:13307977-13313109 REVERSE LENGTH=2352
Length=2352

 Score =  577 bits (312),  Expect = 1e-163
 Identities = 430/486 (88%), Gaps = 12/486 (2%)
 Strand=Plus/Plus

Query  775   CTGGACCTAACAGCTGAGGCAATTGGATACAGTGTGGTGAAGTTTGCTGACCTGAAGAAC  834
             ||||||| ||||||||||||| |||||||  ||| ||| |||| ||||||||||||||||
Sbjct  1450  CTGGACCAAACAGCTGAGGCAGTTGGATATGGTGCGGTCAAGTATGCTGACCTGAAGAAC  1509

Query  835   AACAGATTGTCAAGTTATACTTTCAGCTATGATCAAATGCTTTGTGACAAGGGAAAAACA  894
             ||||||||  ||| |||||||||||||| |||||||||||||  |||||||||||| |||
Sbjct  1510  AACAGATTAACAAATTATACTTTCAGCTTTGATCAAATGCTTAATGACAAGGGAAATACA  1569

Query  895   GCCGTTTACCTTCATTACGCCCATGCTCGGATCTGCTCAATCATCAGAAAGTCTGGCAAA  954
             ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1570  GCCGTTTACCTTCTTTACGCCCATGCTCGGATCTGTTCAATCATCAGAAAGTCTGGCAAA  1629

Query  955   GACATAGATGAGCTGAAAAAGGCAGGAAAGCTAGCATTGGATCATGCAGACGAACGGGCA  1014
             ||||||||||||||||||||| |||||||  ||||||||||||||||||| ||||| |||
Sbjct  1630  GACATAGATGAGCTGAAAAAGACAGGAAAATTAGCATTGGATCATGCAGATGAACGAGCA  1689

Query  1015  CTGGGGCTTCACCTGCTTCAATTTGCCGAGACGGTTGAGGAAGCGTGCACCAAACTG-TT  1073
             |||||||||||| |||||| |||||| |||||||| |||||||| || ||||| ||  ||
Sbjct  1690  CTGGGGCTTCACTTGCTTCGATTTGCTGAGACGGTGGAGGAAGCTTGTACCAA-CTTATT  1748

Query  1074  ACCGCACGTGGTATG--CGAGTACCTCTACGGCTTATCCGAACAGTGCT-CCAAATTCTA  1130
             |||| | ||| | ||  |||||||||||||   ||||| ||||| |  | ||| ||||||
Sbjct  1749  ACCG-A-GTGTTCTGTGCGAGTACCTCTACAATTTATCTGAACACTT-TACCAGATTCTA  1805

Query  1131  C-CACAATTGTCAGGTCATTGGTTCAGCAGAGGAGACAAGCCGTCTCCTACTTTGTGAAG  1189
             | | |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct  1806  CTC-CAATTGTCAGGTCAATGGTTCACCAGAGGAGACAAGCCGTCTCCTACTTTGTGAAG  1864

Query  1190  CAACTGGC-ATAGTCATGCGGAAATGCTTCCACCTACTTGGAATCACCCCTGTTTATAAG  1248
             |||| ||| |||||||||||||||||||||||||| ||||||||||| || ||||| |||
Sbjct  1865  CAAC-GGCCATAGTCATGCGGAAATGCTTCCACCTTCTTGGAATCACTCCGGTTTACAAG  1923

Query  1249  CTTTGA  1254
              |||||
Sbjct  1924  ATTTGA  1929


> AT1G66530.1 | Symbols:  | Arginyl-tRNA synthetase, class Ic | 
chr1:24818911-24822342 REVERSE LENGTH=1991
Length=1991

 Score =  564 bits (305),  Expect = 8e-160
 Identities = 429/489 (88%), Gaps = 8/489 (2%)
 Strand=Plus/Plus

Query  770   AGGAGCTGGACCTAACAGCTGAGGCAATTGGATACAGTGTGGTGAAGTTTGCTGACCTGA  829
             |||||||||||| || |||||||||| |||||||  |||   |||||| |||||||||||
Sbjct  1354  AGGAGCTGGACCAAATAGCTGAGGCAGTTGGATATGGTGCCCTGAAGTATGCTGACCTGA  1413

Query  830   AGAACAACAG-ATTGTCAAGTTATACTTTCAGCTATGATCAAATGCTTTGTGACAAGGGA  888
             ||| |||||| |||  |  |||||||||| |||| |||||||||||||  ||||||||||
Sbjct  1414  AGACCAACAGAATT-ACGGGTTATACTTTTAGCTTTGATCAAATGCTTAATGACAAGGGA  1472

Query  889   AAAACAGCCGTTTACCTTCAT-TACGCCCATGCTCGGATCTGCTCAATCATCAGAAAGTC  947
              | |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct  1473  GATACAGCCGTTTACCTTC-TCTACGCCCATGCTCGGATCTGCTCAATCATCAGAAAGTC  1531

Query  948   TGGCAAAGACATAGATGAGCTGAAAAAGGCAGGAAAGCTAGCATTGGATCATGCAGACGA  1007
             ||| ||||||||||||||||| |||||| |||||||| |||| ||||||||||||| |||
Sbjct  1532  TGGAAAAGACATAGATGAGCTAAAAAAGACAGGAAAGATAGCGTTGGATCATGCAGCCGA  1591

Query  1008  ACGGGCACTGGGGCTTCACCTGCTTCAATTTGCCGAGACGGTTGAGGAAGCGTGCACCAA  1067
             ||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||| 
Sbjct  1592  ACGGGCACTAGGGCTTCACCTGCTTCAGTTTGCTGAGACGGTGGAGGAAGCGTGCACCAC  1651

Query  1068  ACTGTTACCGCACGTGGTATGCGAGTACCTCTACGGCTTATCCGAACAGTGCTCCAAATT  1127
             | |||||||| | ||| | ||| ||||||| |||  |||||||||| ||| | |||||||
Sbjct  1652  ATTGTTACCGAATGTGCTTTGCAAGTACCTTTACTACTTATCCGAAGAGTTCACCAAATT  1711

Query  1128  CTAC-CACAATTGTCAGGTCATTGGTTCAGCAGAGGAGACAAGCCGTCTCCTACTTTGTG  1186
              ||| | |||||||||||| | |||||| || |||||||| ||||||||| ||||||| |
Sbjct  1712  TTACTC-CAATTGTCAGGTGAATGGTTCGGCCGAGGAGACGAGCCGTCTCTTACTTTGCG  1770

Query  1187  AAGCAACTGGC-ATAGTCATGCGGAAATGCTTCCACCTACTTGGAATCACCCCTGTTTAT  1245
             ||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct  1771  AAGCAAC-GGCTATAGTCATGCGGAAATGCTTCCACCTTCTTGGAATCACCCCTGTTTAC  1829

Query  1246  AAGCTTTGA  1254
             |||||||||
Sbjct  1830  AAGCTTTGA  1838


> AT4G26288.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
cellular_component unknown; BEST Arabidopsis thaliana protein 
match is: oxidative stress 3 (TAIR:AT5G56550.1); Has 289 Blast 
hits to 232 proteins in 41 species: Archae - 0; Bacteria 
- 12; Metazoa - 36; Fungi - 21; Plants - 151; Viruses - 2; 
Other Eukaryotes - 67 (source: NCBI BLink). | chr4:13307461-13308953 
FORWARD LENGTH=1366
Length=1366

 Score =  161 bits (87),  Expect = 1e-38
 Identities = 106/115 (92%), Gaps = 2/115 (2%)
 Strand=Plus/Minus

Query  1141  CAGGTCATTGGTTCAGCAGAGGAGACAAGCCGTCTCCTACTTTGTGAAGCAACTGGC-AT  1199
             ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct  926   CAGGTCAATGGTTCACCAGAGGAGACAAGCCGTCTCCTACTTTGTGAAGCAAC-GGCCAT  868

Query  1200  AGTCATGCGGAAATGCTTCCACCTACTTGGAATCACCCCTGTTTATAAGCTTTGA  1254
             |||||||||||||||||||||||| ||||||||||| || ||||| ||| |||||
Sbjct  867   AGTCATGCGGAAATGCTTCCACCTTCTTGGAATCACTCCGGTTTACAAGATTTGA  813


> AT2G02430.1 | Symbols:  | pseudogene, arginyl-tRNA synthetase 
| chr2:635456-636638 FORWARD LENGTH=1183
Length=1183

 Score = 69.4 bits (37),  Expect = 8e-11
 Identities = 39/40 (98%), Gaps = 0/40 (0%)
 Strand=Plus/Plus

Query  937  ATCAGAAAGTCTGGCAAAGACATAGATGAGCTGAAAAAGG  976
            |||||||||||||||||||||||||||||||||||| |||
Sbjct  136  ATCAGAAAGTCTGGCAAAGACATAGATGAGCTGAAACAGG  175



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 61646269260


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5