BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350003
Length=1869
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07360.1 | Symbols: | Amidase family protein | chr5:2326704... 2704 0.0
> AT5G07360.1 | Symbols: | Amidase family protein | chr5:2326704-2330142
REVERSE LENGTH=2332
Length=2332
Score = 2704 bits (1464), Expect = 0.0
Identities = 1612/1686 (96%), Gaps = 0/1686 (0%)
Strand=Plus/Plus
Query 184 ACTCTAACTGAACTACCAGATAAGACTATGCAAGCTAAGTGTCTGCAGAGCATGTTTGAG 243
|||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct 426 ACTCTAACTGAACTACCAGATAAGACTATGGAAGCTAAGTGTCTTCAGGGCATGTTTGAG 485
Query 244 TTGATTGATTCTGGATTCTTCAATGAAACTAAAATACAGGAGATTGCAAAGGGAGCTACT 303
||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 486 TTGATTGATTCTGCATTCTTCAATGAAACTAAACTACAGGAGATTGCAAAGGGGGCTACT 545
Query 304 GAAATGAATGTTCCTATATATCGAGCCAACCGGAAACTAGTCGCTACTAAGAATGGTGGG 363
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 546 GAAATGAATGTTCCTATATATCGAGCCAACCGGAAACTAGTAGCTACTAAGAATGGTGGG 605
Query 364 TTGGAAAATCCATCCCCGCTGGTGTTTAATCCGTCTTGGAACAGAGAAGTTCGACGAGTT 423
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 606 TTGGAAAATCCATCCCCGTTGGTGTTTAATCCGTCTTGGAACAGAGAAGTTCAACGAGTG 665
Query 424 CAAGGCAAGAGATTCAAATACCCTTCGGCATCTGGAGTAAAACTCCCTAGAGATGAAGAA 483
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 666 CAAGACAAGAGATTCAAATACCCTTCGGCATCCGGAGTAAAACTCCCTAGAGATGAAGAA 725
Query 484 GATATCGCATTCATGAGCGTTCTTGAACTCGGAGAACTTATAAAGACGAGACAAGTTACT 543
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 726 GATATCGCCTTCATGAGCGTTCTTGAACTCGGAGAACTTATAAAGACGAGACAAATTACT 785
Query 544 TCCGAGGAACTCGTTCGGATTTATCTCAAGCAGTTAAAACGGTACAATCATGTTCTTGAA 603
||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 786 TCCAAAGAACTCGTTCGGATTTATCTTAAGCAGTTAAAACGGTACAATCATGTTCTTGAA 845
Query 604 GCGGTAGTTACTTATACTGAAGAATTGGCATACAAACAAGCGAAAGAAGCTGATGATTTA 663
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 846 GCGGTAGTTACTTATACTGAAGAACTGGCATACAAACAAGCCAAAGAAGCTGATGATTTA 905
Query 664 CTCTCTCAAGGAACTTATCTCGGACCTCTTCACGGGATTCCATATGGTTTAAAGGATACA 723
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 906 CTCTCTCAAGGAACTTATCTTGGACCTCTTCACGGGATTCCATATGGTTTAAAGGATATA 965
Query 724 ATTGCGGTTCCCCGATACAAAACAACATGGGGTTCAACTTCTTTTAAAGACCAAGTTCTT 783
|||| |||||| |||| |||||||| ||||||||||||||||| ||||||||| |||||
Sbjct 966 GTTGCAGTTCCCGGATATAAAACAACTTGGGGTTCAACTTCTTTCAAAGACCAATTTCTT 1025
Query 784 GATATTGAAGCATGGGTTTACAAAAGATTAAAAGCTTCAGGTGCAGTTTTAGTAGCAAAG 843
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 GACATTGAAGCATGGGTTTACAAAAGATTAAAAGCTTCAGGTGCAGTTTTAGTAGCAAAG 1085
Query 844 CTCGTTGCGGGTTCTATGGCTTATGATGATATCTGGTTCGGGGGACGGACTAGGAACCCG 903
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1086 CTTGTTACGGGTTCTATGGCTTATGATGATATCTGGTTCGGGGGACGGACTAGGAATCCA 1145
Query 904 TGGAATATTGAGGAATTCTCTACCGGGTCATCAGCTGGACCCGCTGCATCCACATCGGCT 963
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TGGAATATCGAGGAATTCTCTACCGGGTCATCAGCTGGACCCGCTGCATCCACATCGGCT 1205
Query 964 GGTATGGTTCCTTTTGCTATAGGCTCGGAGACAGCAGGCTCAATAACATACCCTGCAGCG 1023
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1206 GGTATGGTTCCTTTTGCTATAGGCTCGGAGACAGCAGGCTCAATGACATACCCTGCAGCG 1265
Query 1024 CGGTGTGGCGTAACAGCATTGCGCCCGACATTTGGGAGCGTTGGTAGAACCGGAGTGATG 1083
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1266 CGGTGTGGCATAACAGCATTGCGTCCGACATTTGGGAGCGTTGGTAGAACCGGAGTGATG 1325
Query 1084 AGCTTATCCGAGAGCCTGGATAAGCTGGGACCATTCTGTAGAACAGCAGCGGATTGCGCT 1143
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1326 AGCATATCCGAGAGCCTGGATAAGCTGGGACCTTTCTGTAGAACAGCAGCGGATTGCGCT 1385
Query 1144 GTGATCCTTGACGCTATCAAAGGGAAAGATCCCGATGATCTCTCATCTAGAGAGATAGCG 1203
|| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1386 GTAATTCTTGACGCTATCAAAGGAAAAGATCCCGATGATCTCTCATCTAGAGAGATCGCG 1445
Query 1204 TTTGAAGATCCCTTCTCTGTGGATATCACAAAACTCACAGTTGGGTATACAAAAGATGCT 1263
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1446 TTTGAAGATCCCTTCTCCGTTGATATCACAAAACTCACAGTTGGGTATACAAAAGATGCT 1505
Query 1264 GACATGAAGGTAGTGGAAGTTCTTGGGTCGAAAGGTGTCAATATGGTTCCTTTTGAGCTA 1323
|| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1506 GATATGAAGGTGGTGGAAGTTCTTGGTTCCAAAGGTGTCAATATGGTTCCTTTTGAGCTA 1565
Query 1324 AATTATACAGTGGACTCGGTTCAAGGGATATTGAATTTCACAATGGACGTAGATATGTTA 1383
|||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1566 AATTATACTGTGGAATCGGTTCAAGGGATATTGAACTTCACAATGGATGTAGATATGTTG 1625
Query 1384 GCTCATTTTGATGAATGGCAAAGAACCGGTCAAGACGATCTCTATGAAGCTCAAGATCAA 1443
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1626 GCTCATTTTGATGAATGGCAAAGAACCGGTCAAGAAGATCTCTATGAAGCTCAAGATCAA 1685
Query 1444 TGGCCGGTTGAGTTACGCCGTGCTCGTGTAGTTACAGCAGTAGATTACATTCAGGCGCAG 1503
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1686 TGGCCGGTTGAGTTACGCCGTGCTCGTGTAGTTACAGCAGTAGATTACATTCAGGCTCAG 1745
Query 1504 AGAGCTCGTGGGAAGTTGATTCGAGAAGTGGAGAAGAGCTTTACGGTCGATGCCTTTGTT 1563
||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||| ||
Sbjct 1746 AGAGCTCGTGGTAAGTTGATTCGGGAAGTGGAGAAGAGCTTTACAGTCGATGCGTTTATT 1805
Query 1564 GGAAATGTGACCGATTGGGAGAAAGTCTGTATGGGAAACCTCGTCGGTTTGCCGGTTCTA 1623
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1806 GGAAATGTGACCGATTGGGAGAAAGTCTGTATGGGAAACCTAGTCGGTTTGCCGGTTCTA 1865
Query 1624 GTGATTCCGACTGGTTTCAAGAACATATCGGATCCACCAACCAACAGTTGCCGGAGAAGG 1683
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1866 GTGATTCCGACCGGTTTCAAGAACATAACGGATCCACCAACCAACAGTTGCCGGAGACGG 1925
Query 1684 ACAACGATCAATGCAGGAATTTATGCCCCTCCAGAACATGATCACATTGCTTTGGCATTA 1743
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1926 ACAACGATCAATGCCGGAATTTATGCCCCTCCAGAACGTGATCACATTGCTTTGGCATTG 1985
Query 1744 GGTATGGCGTACCAATCGGTTACCGATGCACATAGAAAGCGACCCCCTATTGATGATCTT 1803
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1986 GGTATGGCGTACCAATCGGTTACCGATGCACATAGGAAGCGACCACCTATTGATGATCTT 2045
Query 1804 GGACCTGATGACTCGATACCGAATCGGCCTCGGGCTTTAATCCCTCCCCGTAGGTTACAC 1863
||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 2046 GGACCGGATGACTCGATACCAAATCCTCCTCGGGCTTTAATCCCTCCCCGTAGGTTACAC 2105
Query 1864 ATTTGA 1869
||||||
Sbjct 2106 ATTTGA 2111
Score = 243 bits (131), Expect = 6e-63
Identities = 153/164 (93%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 9 ACCATCAACCGCCACGTGTGATCCAAGCGCACGACCTTGTTTAGCGACGCGTGGCTCGCT 68
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 140 ACCATCGATCGCCACGTGTGATCCAAGCGCACGACCTTGTTTAGCGACGCGTGGCTCACT 199
Query 69 ACCTCGTAGCCGTACTTGTGCGTCGCTTCTATTCCTCTGCCTCCTCTTAGGTTTAACGGT 128
|||||||||||||| || ||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 200 TCCTCGTAGCCGTACATGCGCGCCGCTTTTATTCCTCTGCCTCCTCCTAGGTTTAACGGT 259
Query 129 CTTTTGTACCGACGCAAATCCTTCTGACTCGAAGCTTCTCTGCT 172
||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 260 CTTTTGTGCGGACGCAAATCCTTCTGACTCGAAGCTTCTCTGCT 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92519604435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5