BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350023
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07590.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2300 0.0
> AT5G07590.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:2401581-2403877 REVERSE LENGTH=1654
Length=1654
Score = 2300 bits (1245), Expect = 0.0
Identities = 1333/1377 (97%), Gaps = 0/1377 (0%)
Strand=Plus/Plus
Query 1 ATGGAATTTACGGAGGCTTACAAGCAAACAGGTCCTTGTTGTTTCTCTCCAAACTCTCGT 60
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 147 ATGGAATTCACGGAGGCTTACAAGCAAACAGGTCCTTGTTGTTTCTCCCCAAACTCTCGT 206
Query 61 TACGTCGCCGTCGCCAATGATTATCGTCTCGTGATCCGTGATACGTTTTCGTTTCAGGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 TACGTCGCCGTCGCCAATGATTATCGTCTCGTGATCCGTGATACGTTTTCGTTTCAGGTT 266
Query 121 GTGCAATTGTTTTCTTGCTTGGATAAAATAAGCTACATAGAATGGGCTCTTGATTCTGAG 180
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 267 GTGCAATTGTTTTCTTGCTTAGATAAAATAAGCTACATAGAATGGGCTCTTGATTCAGAG 326
Query 181 TACATTCTTTGTGGTCTTTATAAAAAACCCATGATTCAAGCTTGGTCATTGACACAACCA 240
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 327 TACATTCTTTGTGGTCTTTATAAAAAACCGATGATTCAAGCTTGGTCTTTGACTCAACCA 386
Query 241 GAATGGACTTGCAAGATTGATGAAGGTCCTGCTGGTATTTCATACGCTAGGTGGAGTCCT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 GAATGGACTTGCAAGATTGATGAAGGTCCTGCTGGTATTTCATACGCTAGGTGGAGTCCA 446
Query 301 GACAGCCGTCATATACTCACTACGTCCGAGTTTCAGCTGCGGTTAACGGTTTGGTCTCTT 360
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 447 GATAGCCGTCATATACTCACTACGTCAGAGTTTCAGCTGCGGTTAACGGTTTGGTCTCTT 506
Query 361 TTAAACACTGCGTGTGTTCATGTTCAGTGGCCGAAGCATGGTTCCAAGGGAGTTTCATTT 420
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 507 TTAAACACGGCGTGTGTTCATGTTCAGTGGCCAAAGCATGGTTCCAAGGGAGTTTCATTC 566
Query 421 AATCAAGATGGGAAGTTTGCAGCGATCTGTACACGGCGTGATTGCAAGGATTATGTTAAC 480
|||||||||||||||||||| || || |||||||||||||| || |||||||||||||||
Sbjct 567 AATCAAGATGGGAAGTTTGCGGCTATATGTACACGGCGTGACTGTAAGGATTATGTTAAC 626
Query 481 CTTTTGTCTTGTCAATCATGGGAAATAATGGGAAGCTTTGCTGTTGACACCTTGGATTTG 540
||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||
Sbjct 627 CTTTTGTCTTGTCAATCATGGGAGATAATGGGTAGCTTTGCTGTTGATACCTTGGACTTG 686
Query 541 GCTGATCTTGAGTGGTCACCTGATGATAGTTCTATTGTAGTGTGGGATTCGCCTCTTGAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 GCTGATCTTGAGTGGTCACCTGATGATAGTTCTATTGTAGTGTGGGATTCGCCTCTTGAA 746
Query 601 TATAAGGTTCTAATCTATTCTCCAGATGGTAGGTGTCTGTTTAAGTACCAGGCATATGAA 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 TATAAGGTTCTAATTTATTCTCCAGATGGTAGGTGTCTGTTTAAGTACCAGGCATATGAA 806
Query 661 TGTGGACTTGGTGTGAAGACTGTTTCCTGGTCTCCGTGTGGTCAGTTTCTTGCTATTGGT 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 807 TGTGGACTTGGTGTCAAGACTGTTTCCTGGTCTCCGTGTGGTCAGTTTCTTGCCATTGGT 866
Query 721 AGCTATGATCAGATGTTGCGGGTCCTGAATCACCTTACTTGGAAAACATTCGCTGAGTTC 780
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 AGCTATGATCAAATGTTGCGGGTCCTGAATCACCTTACTTGGAAAACATTCGCTGAGTTC 926
Query 781 TTACACCTATCAACTGTTCGTGCGCCCTGTTCTGCTGCCATTTTCAAGGAAATCGATGAA 840
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 927 TTACACCTATCAACGGTTCGTGCGCCCTGTTCTGCGGCTATTTTCAAGGAAATCGATGAA 986
Query 841 CCATTACAGCTTGATATGTCTGAGTTATCGTTGGATGAAAACTTTATGCCAAGCAATTAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 CCATTACAGCTTGATATGTCTGAGTTATCGTTGGATGAAAACTTTATGCCAAGCAATTAT 1046
Query 901 GATGCTTCAGAAGGCTATATAAGTGTCAGATATGAAGTCATGGAATTACCGGTAGCTTTT 960
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1047 GATGCTTCAGAAGGCTATATAAGTGTCAGGTATGAAGTCATGGAATTACCGGTAGCTTTT 1106
Query 961 CCTTTCCAGAAACCTCCTGCAGACAAGCCTAACCCAAAACAAGGAGTCGGCCTTCTGGCT 1020
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1107 CCTTTCCAGAAACCTCCTGCGGACAAGCCTAACCCAAAACAAGGAGTCGGCCTTCTAGCT 1166
Query 1021 TGGAGCAAAGACAGCCAATACATATGCACACGAAACGACAGTATGCCCACTGCTCTGTGG 1080
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 TGGAGCAAAGACAGCCAGTACATATGCACACGAAACGACAGTATGCCCACTGCTCTGTGG 1226
Query 1081 ATATGGGACATGCGCCGCCTCGAGGTTGCAGCCATCTTGGTTCAGAAGGAACCTATCCGA 1140
|||||||||||||||| ||||||||||||||||||| |||| ||||||||||| ||||||
Sbjct 1227 ATATGGGACATGCGCCTCCTCGAGGTTGCAGCCATCCTGGTCCAGAAGGAACCCATCCGA 1286
Query 1141 GCCGCTGTGTGGGATCCAACCTGCACACGCCTCCTCCTATGCACTGGAAGCTCTCACCTT 1200
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1287 GCAGCTGTGTGGGACCCAACCTGCACACGCCTCCTCCTGTGCACTGGAAGCTCTCACCTT 1346
Query 1201 TACATGTGGACTCCCTCGGGTGCCTTCTGTGTATGCAATCCCCTTCCGGGCTTCTCCATA 1260
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1347 TACATGTGGACTCCCTCGGGTGCTTTCTGTGTATGCAATCCCCTTCCGGGCTTCTCCATA 1406
Query 1261 TCTGACCTCAAATGGAACATTGATGGAAGCTGTCTCCTTCTCAAAGACAAAGATGCATTC 1320
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1407 TCGGACCTCAAATGGAACATTGATGGAAGCTGTCTCCTTCTCAAAGACAAAGATGCGTTC 1466
Query 1321 TGTTGTGCCACAGTCCCGTCTCTGCCTGAGTCCAGCGACTACAGTTCTGATGACTGA 1377
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 TGTTGTGCCACGGTCCCGTCTCTGCCTGAGTCCAGCGACTACAGTTCTGATGACTGA 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5