BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg350029

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G07380.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   379    9e-105


> AT5G07380.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; EXPRESSED IN: egg 
cell; Has 84 Blast hits to 81 proteins in 31 species: Archae 
- 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 41; 
Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:2332527-2336061 
FORWARD LENGTH=2153
Length=2153

 Score =  379 bits (205),  Expect = 9e-105
 Identities = 231/244 (95%), Gaps = 0/244 (0%)
 Strand=Plus/Plus

Query  142  GATATGGATTCTGAAGCTAGAAACACTCTTATGGCTGCAGCAGATAAATGTGTGTCAGTT  201
            ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct  409  GATATGGATTCTGAAGCTAAAAACACTCTTATGGCTGCAACAGATAAATGTGTGTCAGTT  468

Query  202  GAGTTTCTTCTGTTTGAGGAGCAAGCAAGCTCTCTGAGCTATACGCAGGAGAAGATTAAT  261
            ||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||||||
Sbjct  469  GAGTTTCTTTTGTTTGAGAAGCAAGAAAGCTATCTGAGCTATACGCAGGAGAAGATTAAT  528

Query  262  AGATTCCTGAGATGCTTATCGGATCTTGACAATTGTTCATTTCAAACTTGTATCCCTGAT  321
            |||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct  529  AGATTCCTCAGATGTTTATCGGATCTTGACAATTGTTCATTTCAAACCTGCATCCCTGAT  588

Query  322  GGAAAATCACTTCATGGCCTTGAAAAGAGATGGCTTCAGGAGCTCAAGGACGACTCTGGA  381
            |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct  589  GGAAAATCACTTCATGGCCTTGAAAAGAGATGGCTTCAGGAGCTAAAGGATGACACTGGA  648

Query  382  GAAT  385
            ||||
Sbjct  649  GAAT  652



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18247192887


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5