BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg350029 Length=387 Score E Sequences producing significant alignments: (Bits) Value AT5G07380.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 379 9e-105 > AT5G07380.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: egg cell; Has 84 Blast hits to 81 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:2332527-2336061 FORWARD LENGTH=2153 Length=2153 Score = 379 bits (205), Expect = 9e-105 Identities = 231/244 (95%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 142 GATATGGATTCTGAAGCTAGAAACACTCTTATGGCTGCAGCAGATAAATGTGTGTCAGTT 201 ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 409 GATATGGATTCTGAAGCTAAAAACACTCTTATGGCTGCAACAGATAAATGTGTGTCAGTT 468 Query 202 GAGTTTCTTCTGTTTGAGGAGCAAGCAAGCTCTCTGAGCTATACGCAGGAGAAGATTAAT 261 ||||||||| |||||||| |||||| ||||| |||||||||||||||||||||||||||| Sbjct 469 GAGTTTCTTTTGTTTGAGAAGCAAGAAAGCTATCTGAGCTATACGCAGGAGAAGATTAAT 528 Query 262 AGATTCCTGAGATGCTTATCGGATCTTGACAATTGTTCATTTCAAACTTGTATCCCTGAT 321 |||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||| Sbjct 529 AGATTCCTCAGATGTTTATCGGATCTTGACAATTGTTCATTTCAAACCTGCATCCCTGAT 588 Query 322 GGAAAATCACTTCATGGCCTTGAAAAGAGATGGCTTCAGGAGCTCAAGGACGACTCTGGA 381 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| Sbjct 589 GGAAAATCACTTCATGGCCTTGAAAAGAGATGGCTTCAGGAGCTAAAGGATGACACTGGA 648 Query 382 GAAT 385 |||| Sbjct 649 GAAT 652 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18247192887 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5