BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350051
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08000.1 | Symbols: E13L3, PDCB2 | glucan endo-1,3-beta-gluc... 948 0.0
AT5G61130.1 | Symbols: PDCB1 | plasmodesmata callose-binding pr... 303 9e-82
> AT5G08000.1 | Symbols: E13L3, PDCB2 | glucan endo-1,3-beta-glucosidase-like
protein 3 | chr5:2563554-2565491 FORWARD LENGTH=924
Length=924
Score = 948 bits (513), Expect = 0.0
Identities = 561/585 (96%), Gaps = 0/585 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGCTCTGGTTCTCTACCTTCTCAGTCTCCTCATGGCTGGCCATTCCAGTGCCTCA 60
|||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 131 ATGGCTCCTCTGGTTCTCTACCTTCTCACTCTCCTCATGGCTGGCCATACCAGTGCCTCA 190
Query 61 TGGTGTGTGTGCAAAACAGGGCTGAGTGACTCAGTGCTACAAAAGACATTAGACTATGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 TGGTGTGTGTGCAAAACAGGGCTGAGTGACTCAGTGCTACAAAAGACATTAGACTATGCT 250
Query 121 TGTGGAAATGGAGCTGACTGTAACCCAACTCACCCAAAAGGCTCTTGCTTTAACCCTGAC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 251 TGTGGAAATGGAGCTGACTGTAACCCAACTCACCCAAAAGGCTCTTGCTTCAATCCTGAC 310
Query 181 AATGTTAGGGCTCATTGCAACTATGCAGTCAATAGCTTCTTCCAAAAGAAAGGTCAAGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 AATGTTAGGGCTCATTGCAACTATGCAGTCAATAGCTTCTTCCAAAAGAAAGGTCAAGCT 370
Query 241 GCTGAGTCTTGTAACTTCACTGGTTCTGCAACTCTTACCACCACTGATCCCAGCTATACA 300
||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 371 TCTGAGTCTTGTAACTTCACTGGTACTGCCACTCTTACCACCACCGATCCCAGCTATACA 430
Query 301 GGATGTGCATTCCCTTCTACTGCTAGTGGTTGTAGTGGAAGCAGTAGCACCACCGTGACG 360
||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct 431 GGATGTGCATTCCCTTCTAGTGCTAGTGGTTCTAGTGGAAGCGGTAGCACCACCGTGACG 490
Query 361 CCAGGCAAAAACAGTCCAAAAGGAAGCAACAGCATCACCACATTTCCCGGCGGAAACAGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 CCAGGCAAAAACAGTCCAAAAGGAAGCAACAGCATCACCACATTTCCCGGCGGAAACAGT 550
Query 421 CCATACACCGGCACACCATCCACCGGGTTATTAGGAGGCAATGTCACTGATGCTACTGGA 480
|||||| | ||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 551 CCATACTCTGGCACACCATCCACCGGCTTATTAGGAGGCAATATCACTGATGCTACTGGA 610
Query 481 ACCGGGTTTAACCCAGATTACTCAACCGAAAGCAGTGGATTCGCGCTCCATTACTCCAAC 540
|||||||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 611 ACCGGGTTGAACCCGGATTACTCAACCGAAAGCAGTGGATTTGCGCTCTATTACTCCAAC 670
Query 541 AACCTTATGTTTACCGGCTTTTGTTCTCTCTTGATGATGCTTTGA 585
|||||| |||| |||||||||||||||||| |||||||||| |||
Sbjct 671 AACCTTCTGTTAACCGGCTTTTGTTCTCTCGTGATGATGCTCTGA 715
> AT5G61130.1 | Symbols: PDCB1 | plasmodesmata callose-binding
protein 1 | chr5:24587213-24589580 REVERSE LENGTH=1042
Length=1042
Score = 303 bits (164), Expect = 9e-82
Identities = 336/416 (81%), Gaps = 24/416 (6%)
Strand=Plus/Plus
Query 1 ATGGCTGCTCTGGTTCTCTAC-CTTCTCAGTC--TCCTCATGGCTGGCCATTCCAGTGCC 57
|||||||||||||| || | | |||||| || |||| ||||||| ||||| ||||||
Sbjct 212 ATGGCTGCTCTGGTGCT-TTCACTTCTCCTTCTATCCT--TGGCTGGACATTCTAGTGCC 268
Query 58 TCATGGTGTGTGTGCAAAACAGGGCTGAGTGACT-CAGTGCTACA-AAAGACATTAGACT 115
|||||||||||||| || |||||||||||||| | |||||||||| | || ||||||
Sbjct 269 TCATGGTGTGTGTGTAAGACAGGGCTGAGTGA-TACAGTGCTACAGGCA-ACCCTAGACT 326
Query 116 ATGCTTGTGGAAATGGAGCTGACTGTAACCCAACTCACCCAAAAGGCTCTTGCTTTAACC 175
||||||||||||||||||| || ||||| || ||| | |||||| |||||||| ||||
Sbjct 327 ATGCTTGTGGAAATGGAGCAGATTGTAATCCTACTAAACCAAAACAATCTTGCTTCAACC 386
Query 176 CTGACAATGTTAGGGCTCATTGCAACTATGCAGTCAATAGCTTCTTCCAAAAGAAAGGTC 235
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 387 CTGACAATGTTAGGTCTCATTGCAACTATGCAGTCAATAGCTTCTTCCAAAAGAAGGGTC 446
Query 236 AAGCTGCTGAG-TCTTGTAACTTC-ACTGGTTCTGCAACTCTTACCACCACTGATCCCAG 293
|| || ||| | |||||||| ||| | ||| |||| |||| || | | | ||||||||
Sbjct 447 AATCTCCTG-GCTCTTGTAATTTCGA-TGGAACTGCCACTCCCACTAACTCCGATCCCAG 504
Query 294 CTATACAGGATGTGCATTCCCTTCTACTGCTAGTGGTTGTAGTGGAAGCAGTAGCACCAC 353
|||||||| ||||| || ||| ||| ||| ||||| | ||| || |||| || ||
Sbjct 505 TTATACAGGTTGTGCCTTTCCTACTAGTGCCAGTGGCTCTAGCGGCAGCA----CA--AC 558
Query 354 CGTGACGCCAGGCAAAAACAGTCCAAAAGGAAGC--AACAGCATCACCACATTTCC 407
||||| || |||| || || ||||||||| ||| ||| | | ||||||| ||||
Sbjct 559 TGTGACACCTGGCACAACCAATCCAAAAGGCAGCCCAAC-G-ACCACCACACTTCC 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28131122320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5