BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg350085

Length=879
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08360.1 | Symbols:  | Protein of unknown function (DUF789) ...   712    0.0  


> AT5G08360.1 | Symbols:  | Protein of unknown function (DUF789) 
| chr5:2689713-2690974 FORWARD LENGTH=807
Length=807

 Score =  712 bits (385),  Expect = 0.0
 Identities = 514/573 (90%), Gaps = 21/573 (4%)
 Strand=Plus/Plus

Query  291  TCAGTATTATGCTCCCACCCTCTCCGCCATCCAAATCTTCACCAAGAAACCCTTCGTTGA  350
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct  3    TCAGTATTATGCTCCCACCCTCTCCGCCATGCAAATCTTCACCAAGAAACCCTTCCTCGA  62

Query  351  TGATGGAtcttcttcttcttcttcttcttcttcAAGGAGCTTTGGTGAGGACTGTCATCT  410
             ||||||            ||||||||||| ||||||||||||||||||||||| |||||
Sbjct  63   CGATGGA------------TCTTCTTCTTCATCAAGGAGCTTTGGTGAGGACTGCCATCT  110

Query  411  TTATTTTGAATACAATGAGACAATGAGCT-TAGAGGCGGC-TAGGCCTCCTCTTACTATG  468
             ||||||||||||||||||||| |||| | |||| | ||| ||||| |||||||||||||
Sbjct  111  CTATTTTGAATACAATGAGACAGTGAG-TGTAGATG-GGCTTAGGCTTCCTCTTACTATG  168

Query  469  ATGTTTGAGGAACTGGCTAAGAAGCACCATGGATTGAATACTCTTAGAACCTCTGATCTG  528
            ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  169  ATGGTTGAGGAACTAGCTAAGAAGCACCATGGATTGAATACTCTTAGAACCTCTGATCTG  228

Query  529  TCTGAAAACAGTTGGTTTTCTATAACTTGGTCTCGGGGAATTCAAATTCCAGCG-GTGAA  587
            ||||||||||| |||||||||||||||||||||| || || |||||||||| || | | |
Sbjct  229  TCTGAAAACAGCTGGTTTTCTATAACTTGGTCTCCGGCAACTCAAATTCCATCGAG-GCA  287

Query  588  AACCCTGAATCAGTATTTCCTAACATATCATTCATTGACACCCGTTATTCCAGAAACTAT  647
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  288  AACACTGAATCAGTATTTCCTAACATATCATTCATTGACACCCGTTATTCCAGAAACAAT  347

Query  648  TCCTAAAAAGACAAAAGTTGAGCTTCCTGCTTTTGGAGTTCTGACTACCAAGCTA---GA  704
            |||||||  |||| ||||||||||||||||||||||||||||||||||||||||    | 
Sbjct  348  TCCTAAAGGGACAGAAGTTGAGCTTCCTGCTTTTGGAGTTCTGACTACCAAGCTCTCTGG  407

Query  705  CAAAGTTTGGATCATGCCTGGGACCTCAGATCAAGAGATCATAAACAGGCTTGAAGAGTC  764
            | ||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||| |
Sbjct  408  CGAAGTTTGGAACATGCCAGGGACCTCAGATCAAGAGATCATAAACAGGCATGAGGAGGC  467

Query  765  TGCTGCCTCCTGGATGGGAAAACGCATGTTCAGCCACAGCGATTTCGACATGTTTATGGC  824
            ||||||||||||| ||||||||| ||||||||||||||  ||||||||| ||||||||||
Sbjct  468  TGCTGCCTCCTGGCTGGGAAAACTCATGTTCAGCCACAATGATTTCGACTTGTTTATGGC  527

Query  825  TGAGAAATCTAAGGACCTGCCATTTTCTAGTGG  857
            ||||||| ||||||||||||||||||| |||||
Sbjct  528  TGAGAAACCTAAGGACCTGCCATTTTCAAGTGG  560



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42899961538


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5