BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg350090

Length=864
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08400.1 | Symbols:  | Protein of unknown function (DUF3531)...  1044    0.0  
  AT5G08390.1 | Symbols:  | Transducin/WD40 repeat-like superfami...  91.6    1e-17


> AT5G08400.1 | Symbols:  | Protein of unknown function (DUF3531) 
| chr5:2706458-2708939 REVERSE LENGTH=1797
Length=1797

 Score = 1044 bits (565),  Expect = 0.0
 Identities = 595/610 (98%), Gaps = 0/610 (0%)
 Strand=Plus/Plus

Query  255   GGTACTGGAGAGTGCGTGTAAAGATGATGAAGAGCTTCGAGCTGTTCTTGGTGATAGCAT  314
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421   GGTACTGGAAAGTGCGTGTAAAGATGATGAAGAGCTTCGAGCTGTTCTTGGTGATAGCAT  480

Query  315   AGGAAATCCTAAGCTCATGagaaagaaggttgaagaaagagttaggaagaagggaaaaga  374
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481   AGGAAATCCTGAGCTCATGAGAAAGAAGGTTGAAGAAAGAGTTAGGAAGAAGGGAAAAGA  540

Query  375   tttccagaagcagaagaCTGGTTCTGTGCTTTCTTTCAAAGTTAACTTCAGAGACTTCAA  434
             ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  541   TTTCCAGAAACAGAAGACTGGTTCTGTGCTTTCTTTCAAAGTTAACTTCAGAGATTTCAA  600

Query  435   TCCTGTTGATTCCTTCATATGGTTTGAGCTCTATGGAACGCCTTCTGATCGAGATGTTGA  494
             |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  601   TCCTGTAGATTCCTTCATATGGTTTGAGCTCTATGGAACGCCTTCAGATCGAGATGTTGA  660

Query  495   TCTCATTGGAAGTGTTATACAGGCATGGTATGTTATGGGGCGGTTGGGCGCTTTCAATAC  554
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  661   TCTCATTGGAAGTGTTATACAGGCATGGTATGTTATGGGGCGATTGGGCGCTTTCAATAC  720

Query  555   ATCCAACTTGCAGCTGGCAAATTCATCTCTAGAATATGATCCTCTCTATGACGCAGAGAA  614
             ||||||||||||||| |||||  |||| ||||||||||||||||||||||||||||||||
Sbjct  721   ATCCAACTTGCAGCTAGCAAACACATCCCTAGAATATGATCCTCTCTATGACGCAGAGAA  780

Query  615   AGGCTTCAAAGTGATGCCTTCATCGTTTCATGACATTAGCGATGTCGAATTTCAAGACAA  674
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  781   GGGCTTCAAAGTGATGCCTTCATCGTTTCATGACATTAGCGATGTCGAATTTCAAGACAA  840

Query  675   TTGGGGTCGTGTGTGGGTTGATCTTGGTACTTCCGATATCTTCGCCCTTGATGTGCTTCT  734
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  841   CTGGGGTCGTGTGTGGGTTGATCTTGGTACTTCCGATATCTTCGCCCTTGATGTGCTTCT  900

Query  735   CAACTGTTTAACAGTTATGAGTTCAGAGTACTTGGGCATTCAACAAGTAGTATTTGGAGG  794
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  901   CAACTGTTTGACAGTTATGAGTTCAGAGTACTTGGGCATTCAACAAGTAGTATTTGGTGG  960

Query  795   TAAACGAATGGGAGATTGGGAAGAGGGAATGACAAATCCTGATTTTGGGTATAAGTACTT  854
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  961   TAAACGAATGGGAGATTGGGAAGAGGGAATGACAAATCCTGATTTTGGGTATAAGTACTT  1020

Query  855   CAAGATCTGA  864
             ||||||||||
Sbjct  1021  CAAGATCTGA  1030


 Score =  390 bits (211),  Expect = 1e-107
 Identities = 244/260 (94%), Gaps = 1/260 (0%)
 Strand=Plus/Plus

Query  1    ATGAATCTCAATTTCGCTTTCTCCCCATTCCATGTCTCTCAGACACAACCATTCTCTCCC  60
            ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct  68   ATGAATCTCAATTTCGCTTTCTCCCCATTCCTTGTCTCTCAGAGACAACCATTCTCTTCC  127

Query  61   CACAAGCGTAATCTTCACACTCTCGTCGCTGTTTCTGCTAATTCCGACAACCTCGCCGGT  120
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  128  CACAAGCGTAATCTTCACACTCTCGTTGCTGTTTCTGCTAATTCCGACAACCTCGCCGGT  187

Query  121  GAAAATAACGGCGGAATGTCGGCGGCGAATAAAGGTTCTGGTACTACGGCAAGAGGAAGG  180
            ||| ||||||||||||| |||||||| |||||||||||||| ||||| || |||||||||
Sbjct  188  GAAGATAACGGCGGAATTTCGGCGGCAAATAAAGGTTCTGGGACTACAGCGAGAGGAAGG  247

Query  181  AGATTACTCAAGGTTAGAGAAGACAAGAGGAAACGCGACTACGATCGTCTGCACGATTAT  240
            ||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||||| 
Sbjct  248  AGATTACTCAAGGTTAGAGAAGAGAAGCGAAAACGCGACTACGATCGTCTTCACGATTAC  307

Query  241  CCATCTTGGGCCAAGGTACT  260
            ||||||||||||||| ||||
Sbjct  308  CCATCTTGGGCCAAG-TACT  326


> AT5G08390.1 | Symbols:  | Transducin/WD40 repeat-like superfamily 
protein | chr5:2701013-2707273 FORWARD LENGTH=3242
Length=3242

 Score = 91.6 bits (49),  Expect = 1e-17
 Identities = 49/49 (100%), Gaps = 0/49 (0%)
 Strand=Plus/Minus

Query  816   AGAGGGAATGACAAATCCTGATTTTGGGTATAAGTACTTCAAGATCTGA  864
             |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3242  AGAGGGAATGACAAATCCTGATTTTGGGTATAAGTACTTCAAGATCTGA  3194



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42146449333


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5