BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350108
Length=3267
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Histone d... 2204 0.0
> AT5G08450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Histone
deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444
Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria
- 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886;
Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink).
| chr5:2727821-2732888 REVERSE LENGTH=3087
Length=3087
Score = 2204 bits (1193), Expect = 0.0
Identities = 1375/1461 (94%), Gaps = 20/1461 (1%)
Strand=Plus/Plus
Query 1 ATGAGTGGTGTTCCAAAGAGATCTCACGAAGAGGGTGTTACTCATCCTTCTTCTTCTTCT 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 182 ATGAGTGGTGTTCCAAAGAGATCTCACGAAGAGGGTGTTACTCATCCATCTTCTTCTTCA 241
Query 61 TCAGCAGCAAAATACCCTCACGAGGATTCTGGATCTTACCCTAAATCGCCGCATCAGCCT 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TCAGTAGCAAAATACCCTCACGAGGATTCTGGATCTTACCCTAAATCGCCGCATCAGCCT 301
Query 121 GTTACGCCACCACCGGCTCAGGTTCATCATCACCATCAACAACAACCCCATCAGCATCCC 180
|| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 302 GTGACGCCACCACCGGCTCAGGTTCATCATAACCAT---CAACAGCCCCATCAGCATCCC 358
Query 181 CAA---C---CTCAA--T----CTCAACCTCACCTCCACACGCTTCCTCATCCC-CATTC 227
||| | ||||| | |||||||||||||||| |||||||||| ||| |||||
Sbjct 359 CAATCTCAATCTCAATCTCAGCCTCAACCTCACCTCCAGGCGCTTCCTCA-CCCTCATTC 417
Query 228 TCATTCTCACTCTCATTCACCACTtgctgctgctg---ctgctgctgctCCTTATGAGGT 284
|||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 418 TCATTCTCACTCCCATTCACCACTTGCTGCTGCTGCTTCTGCTTCTGCTCCTTATGAGGT 477
Query 285 TGAACCTAGAACGGTGGTTAAGGTTGCGAGAAGTGAGCCTAGAGATGGAGAGAGACGCTC 344
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 478 TGAATCTAGAACGGTGGTTAAGGTTGCGAGAAGCGAGCCTAGAGATGGAGAGAGACGCTC 537
Query 345 TCCTCTCCCTCTTGTCTATCGGTCTCCGTCCCTGCCCACTACTGTTTCTTCTAGTGATCC 404
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 538 TCCTCTGCCTCTTGTCTATCGGTCTCCGTCGCTGCCCACAACTGTTTCTTCTAGTGATCC 597
Query 405 TCATTTGACTCACGCCCCTGTGCCCATGGAACCGAGAGATGGTACTAAGGATGGTAGGGA 464
|||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |||||
Sbjct 598 TCATTTGACTCACGCCCCTGTGCCGATGGAGCCGAGAGATGGTGCTAAGGATGGCAGGGA 657
Query 465 AATTAGGGTTGACAACAGAGAAAGTAGGAGTGATGGAAGAGAGATTTATGGTGAGACAAA 524
|||||||||||| | ||||||| |||||||||||| |||||||| ||||||||||||||
Sbjct 658 AATTAGGGTTGAGAGTAGAGAAAATAGGAGTGATGGGAGAGAGATATATGGTGAGACAAA 717
Query 525 GAGAGAGATTCAGGGTCCTAAGAGTGACAGAGATGTGAAGTTTGATAGATCAGTAGACGA 584
||| |||||||||||||||||| | |||||||||||||| ||||| ||||||||||| ||
Sbjct 718 GAGGGAGATTCAGGGTCCTAAGGGAGACAGAGATGTGAAATTTGAGAGATCAGTAGATGA 777
Query 585 CTTTAGCGGAAAAGGTAATACTGGAAGCTATACTAGGAATGATGGGAGTGAGATGTATGG 644
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 778 CTTTAGCGGAAAAGGTAATACCGGAAGCTATACTAGGAATGATGGGAGAGAGATGTATGG 837
Query 645 CGAGACTAAGAGGGAGATTCAGGGTCCTAAGAGTGACAGGGATGCCAAGTTTGAGCGTCC 704
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TGAGACTAAGAGGGAGATTCAGGGTCCTAAGAGTGACAGGGATGCCAAGTTTGAGCGTCC 897
Query 705 AGGGGATGATTTTAGCGGGAAAAGTAATGCCGGTAGCTATACTAGGGATACCAAATTTGA 764
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 898 AGGGGATGATTTTAGCGGGAAAAGTAATGCCGGTAGCTATACTAGGGATACAAAATTTGA 957
Query 765 TAGGGAGAATCAGAATTATAATGAACAAAAGGCGGAGATTAAGATGGAAAAGGACGGGCA 824
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 958 TAGGGAGAATCAAAATTATAATGAACAAAAGGGGGAGATTAAGATGGAAAAGGAAGGGCA 1017
Query 825 TGCTCACTTGGCTTGGAAAGAGCAGAAGGATTACCATAGAGGCAAGAGAGTTGCTGAAGG 884
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1018 TGCTCACTTGGCTTGGAAAGAGCAGAAGGATTACCATAGAGGGAAGAGAGTTGCTGAAGG 1077
Query 885 TTCCACTGCAAATGTGGATCCGTGGGTTGCATCCCGTGGTAATCCGCAAGGCCCAACTGA 944
||| |||||||||||||| |||||||||| |||||| |||||||||||||||||||||||
Sbjct 1078 TTCGACTGCAAATGTGGACCCGTGGGTTGTATCCCGCGGTAATCCGCAAGGCCCAACTGA 1137
Query 945 GGTTGGGCCTAAGGATTTCTCCGCGCCTGTGGAGGGGCCCCAGTTAGAGGGACGTGAAAC 1004
|||||||||||| ||| |||| ||||||||||||||| | || || || |||||||||||
Sbjct 1138 GGTTGGGCCTAAAGATCTCTCTGCGCCTGTGGAGGGGTCTCATTTGGAAGGACGTGAAAC 1197
Query 1005 TGTCGGAGAAAACAAGGTTGATGCAAAAAACGAAGATAGATTTAAGGACAAAGATAAGAA 1064
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1198 CGTCGGAGAAAACAAGGTTGATGCCAAAAACGAAGATAGATTTAAGGAAAAAGATAAGAA 1257
Query 1065 AAGAAAAGAGTTAAAGCATCGAGAATGGGGGGACCGAGATAAGGATAGAAATGACCGTCG 1124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1258 AAGAAAAGAGTTAAAGCATCGAGAATGGGGGGACCGAGACAAGGATAGAAATGACCGTCG 1317
Query 1125 AGGATCCGTGCTTATTGGTAGTGTCATGAGTGAACCCAAAGAGATTGGAAGAGAAGAAAG 1184
|| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AGTATCTGTGCTTGTTGGTAGTGTCATGAGTGAACCCAAAGAGATTGGAAGAGAAGAAAG 1377
Query 1185 AGAATCCGACAGGTGGGAACGGGAGAGGATGGAGCAGAAAGATCGAGAAAGGAATAAAGA 1244
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1378 GGAATCCGATAGGTGGGAACGGGAGAGGATGGAGCAGAAAGATCGAGAAAGAAATAAAGA 1437
Query 1245 GAAAGATAAAGATCATATCAAAAGAGAGCCAAGGACTGGTGCTGAGAAAGAGATCTCGCA 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GAAAGATAAAGATCATATCAAAAGAGAGCCAAGGACTGGTGCTGAGAAAGAGATCTCGCA 1497
Query 1305 GAATGAGAAAGAGTTGGGAGAAGCATCTGCCAAACCATCAGAGCAGGAATATGTGGCACC 1364
||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1498 GAACGAGAAAGAGCTGGGAGAAGCATCTGCCAAACCCTCAGAGCAGGAATATGTGGCACC 1557
Query 1365 AGAGCAGAAGAAGCAGAACGAACCGGATAATTGggaaaaagacgaaagagaatcaaagga 1424
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1558 AGAGCAGAAGAAGCAGAACGAACCGGATAATTGTGAAAAAGACGAAAGAGAAACAAAGGA 1617
Query 1425 aaaaaggagagagagggatgg 1445
|||||||||||||||||||||
Sbjct 1618 AAAAAGGAGAGAGAGGGATGG 1638
Score = 861 bits (466), Expect = 0.0
Identities = 528/555 (95%), Gaps = 16/555 (3%)
Strand=Plus/Plus
Query 1632 GGAGAACAATAGCAAGTCAGAGGTGTCGATTGTTGTTTACAAAGTTGGCGAATGTATGCA 1691
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 GGAGTACAA-GGCAAGTCAGAGGTGTCGATTGTTGTTTACAAAGTTGGCGAATGTATGCA 1905
Query 1692 AGAACTGATTAAATTGTGGAAAGAATATGATTTGTCTCATCCTGATAAAAGCGGTGATTT 1751
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1906 AGAACTGATTAAGTTGTGGAAAGAATATGATTTGTCTCATCCTGATAAAAGCGGTGATTT 1965
Query 1752 TGCAAATAATGGCCCCACTCTTGAAGTTAGGATTCCAGCTGAGCATGTTACTGCTACAAA 1811
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1966 CGCTAATAATGGCCCCACTCTTGAAGTTAGGATTCCAGCTGAGCATGTTACTGCTACAAA 2025
Query 1812 TCGCCAAGTAAGAGGTGGCCAGCTATGGGGAACAGATATATACACAGACGATTCCGATC- 1870
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2026 TCGCCAAGTAAGAGGTGGCCAACTATGGGGAACAGATATATACACAGACGATTCCGATCT 2085
Query 1871 ---T--TG---T--TGC-T---GGTTACTGTCGTCCCACAGCTTCTCCTCCTCCACCTAC 1916
| || | ||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 2086 TGTTGCTGTTCTCATGCATACAGGTTACTGTCGTCCCACAGCTTCTCCTCCTCCACCGAC 2145
Query 1917 AATGCAAGAGCTGCGCACTACTATTAGAGTCTTGCCGTCACAAGATTACTACACCTCCAA 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146 AATGCAAGAGCTGCGCACTACTATTAGAGTCTTGCCGTCACAAGATTACTACACCTCCAA 2205
Query 1977 GCTAAGGAACAATGTCCGTTCTCGAGCATGGGGAGCTGGAATCGGATGCAGTTACAGAGT 2036
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2206 GCTAAGGAACAATGTCCGTTCTCGAGCATGGGGAGCTGGAATCGGATGCAGTTATAGAGT 2265
Query 2037 TGAGCGGTGCTATATACTGAAGAAAGGAGGTGGGACTATTGAACTGGAACCTTCTCTTAC 2096
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2266 TGAGCGGTGCTATATACTGAAGAAAGGAGGTGGGACTATTGAACTGGAACCTTCCCTTAC 2325
Query 2097 ACACTCCTCAACTGTGGAGCCAACACTTGCACCAATGGCTGTTGAAAGATCTATGACCAC 2156
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2326 ACACTCCTCAACTGTGGAGCCAACTCTTGCACCAATGGCTGTTGAAAGATCTATGACCAC 2385
Query 2157 CAGGGCTGCAGCTTC 2171
||| |||||||||||
Sbjct 2386 CAGAGCTGCAGCTTC 2400
Score = 780 bits (422), Expect = 0.0
Identities = 454/470 (97%), Gaps = 0/470 (0%)
Strand=Plus/Plus
Query 2798 GGATCAAATATAGCATAAGCATTGTTGCTGATAAAGGTCTCAAGAAGCCACTTTTCACCT 2857
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2469 GGATTAAATATAGCATAAGCATTGTTGCTGATAAAGGTCTCAAGAAGCCTCTTTTCACCT 2528
Query 2858 CTGCCCGCTTGAAGAAAGGAGAAGTTTTGTACTTAGAAACTCATTCATGCAGGTATGAGC 2917
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2529 CTGCCCGCTTGAAGAAAGGGGAAGTTTTGTACTTAGAAACTCATTCATGCAGGTATGAGC 2588
Query 2918 TCTGTTTCGCTGGAGAGAAAACCATCAAAGCAATCCAAGCCTCACAACAACAATCATCGC 2977
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2589 TCTGTTTCGCAGGAGAGAAGACCATCAAAGCAATCCAAGCCTCACAACAACAATCATCAC 2648
Query 2978 ATGAAGCTATGGAGACGGATAATAATAATAACAAGTCACAGAACCATCTGACAAACGGTG 3037
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2649 ATGAAGCTATGGAGACAGATAATAATAATAACAAGTCACAGAACCATCTGACAAACGGTG 2708
Query 3038 ACAAAACAGATTCAGACAACAGTTTAATCGATGTTTTCCGTTGGTCACGCTGTAAGAAAC 3097
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 2709 ACAAAACAGATTCAGACAACAGTTTAATTGATGTTTTCCGCTGGTCACGATGTAAGAAAC 2768
Query 3098 CTCTCCCGCAGAAGCTTATGCGGTCTATTGGGGTTCCACTCCCTGCAGATCATATCGAGG 3157
||||||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||||
Sbjct 2769 CTCTCCCACAGAAGCTTATGCGGTCTATCGGGTTTCCACTCCCAGCAGATCATATCGAGG 2828
Query 3158 TGTTGGAGGAGAATCTTGATTGGGAAGATGTACAGTGGTCACAAACTGGTGTTTGGATTG 3217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2829 TGTTGGAGGAGAATCTTGATTGGGAAGATGTACAGTGGTCACAAACTGGTGTTTGGATTG 2888
Query 3218 CTGGAAAAGAGTACACACTTGCTCGTGTTCATTTTCTCTCGCCCAACTAA 3267
|||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 2889 CTGGAAAAGAGTACACTCTTGCTCGTGTTCATTTTCTCTCCCCCAACTAA 2938
Score = 479 bits (259), Expect = 8e-134
Identities = 351/390 (90%), Gaps = 27/390 (7%)
Strand=Plus/Plus
Query 2437 GTAAGAGGTGGCCAGCTATGGGGAACCGATATATACACAGACGATTCCGATC----T--T 2490
|||||||||||||| ||||||||||| ||||||||||||||||||||||||| | |
Sbjct 2033 GTAAGAGGTGGCCAACTATGGGGAACAGATATATACACAGACGATTCCGATCTTGTTGCT 2092
Query 2491 G---T--TGC-T---GGTTACTGTCGTCCCACAGCTTCTCCTCCTCCACCGACAATGCAA 2541
| | ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2093 GTTCTCATGCATACAGGTTACTGTCGTCCCACAGCTTCTCCTCCTCCACCGACAATGCAA 2152
Query 2542 GAGTTGCGCACTACTATTAGAGTCTTACCGTCACAGGATTACTACACCTCCAAGCTAAGG 2601
||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2153 GAGCTGCGCACTACTATTAGAGTCTTGCCGTCACAAGATTACTACACCTCCAAGCTAAGG 2212
Query 2602 AACAATGTCCGTTCTCGAGCATGGGGAGCTGGAATCGGATGCAGTTACAGAGTTGAGCGG 2661
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2213 AACAATGTCCGTTCTCGAGCATGGGGAGCTGGAATCGGATGCAGTTATAGAGTTGAGCGG 2272
Query 2662 TGCTATATACTGAAGAAAGGAGGTGGAACTATTGAACTGGAGCCTTCTCTTACACACTCC 2721
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 2273 TGCTATATACTGAAGAAAGGAGGTGGGACTATTGAACTGGAACCTTCCCTTACACACTCC 2332
Query 2722 TCAACTGTGGAGCCAACACTCGCACCAATGGCT----A----T----GACCACTAGAGCT 2769
||||||||||||||||| || |||||||||||| | | |||||| ||||||
Sbjct 2333 TCAACTGTGGAGCCAACTCTTGCACCAATGGCTGTTGAAAGATCTATGACCACCAGAGCT 2392
Query 2770 GCAGCTTCGAATGCTCTGCGGCAACAAAGG 2799
||||||||||||||||||||||||||||||
Sbjct 2393 GCAGCTTCGAATGCTCTGCGGCAACAAAGG 2422
Score = 374 bits (202), Expect = 4e-102
Identities = 225/236 (95%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 2174 AGGAAAAAAGGAGAGAGAGGGATGGTGATTCAGAGGCAGAAAGAGCTGAAAAGCGTAGCA 2233
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1614 AGGAAAAAAGGAGAGAGAGGGATGGTGATTCAGAGGCAGAAAGAGCTGAAAAGCGCAGCA 1673
Query 2234 GAATCAGTGAAAAAGAATCTGAAGATGGGTGTTTGGAGGGTGAAGGAGCTACAGAGAGGG 2293
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1674 GAATCAGTGAAAAAGAATCTGAAGATGGGTGTTTAGAGGGTGAAGGAGCTACCGAGAGGG 1733
Query 2294 AAAAGGATGCCTTCAACTATGGAGTTCAGCAGCGGAAGAGAGCGCTGAGACCGAGAGGCA 2353
|||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1734 AAAAGGATGCCTTCAATTATGGGGTTCAGCAGAGGAAGAGAGCGCTGAGACCGAGAGGCA 1793
Query 2354 GCCCACAAACCACGAACCGCGAACA-TGTCCACTCACGGAGTCAGGACAACGAAGG 2408
||||||||||||| || ||||| || ||||| ||||||||||||||||||||||||
Sbjct 1794 GCCCACAAACCACTAATCGCGA-CAATGTCCGCTCACGGAGTCAGGACAACGAAGG 1848
Score = 222 bits (120), Expect = 1e-56
Identities = 146/158 (92%), Gaps = 3/158 (2%)
Strand=Plus/Plus
Query 1434 agagagg-gatggagctactgagagggaaaagGATGCCTTCAATTATGGAGTTCAGCAGC 1492
|||| || || |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1708 AGAG-GGTGAAGGAGCTACCGAGAGGGAAAAGGATGCCTTCAATTATGGGGTTCAGCAGA 1766
Query 1493 GGAAGAGAGCGCTGAGACCGAGAGGCAGCCCACAAACCACAAACCGCGACCATGTCCTCT 1552
|||||||||||||||||||||||||||||||||||||||| || |||||| |||||| ||
Sbjct 1767 GGAAGAGAGCGCTGAGACCGAGAGGCAGCCCACAAACCACTAATCGCGACAATGTCCGCT 1826
Query 1553 CACGGAGTCAGGACAACGAAGGAGTACAAGGTAA-TCA 1589
||||||||||||||||||||||||||||||| || |||
Sbjct 1827 CACGGAGTCAGGACAACGAAGGAGTACAAGGCAAGTCA 1864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 162540895320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5