BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350119
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08535.1 | Symbols: | D111/G-patch domain-containing protei... 715 0.0
AT3G52350.1 | Symbols: | D111/G-patch domain-containing protei... 401 2e-111
> AT5G08535.1 | Symbols: | D111/G-patch domain-containing protein
| chr5:2762029-2763436 FORWARD LENGTH=788
Length=788
Score = 715 bits (387), Expect = 0.0
Identities = 413/426 (97%), Gaps = 0/426 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGATTCCTCGGTTTCGACAAGTTCATGGGCTGCCATTGACTCTGCTAATAGGTTT 60
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 247 ATGGGAGATTCCTCGGTTTCGACAAGTTCATGGGCTGTCATTGAATCTGCTAATAGGTTT 306
Query 61 CAGGTGTCGAACGTTATGGGTGAGTCCTCTGGATCAAGCAGTTCATTGGCTGCTATAAAT 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CAGGTGTCGAGCGTTATGGGTGAGTCCTCTGGATCAAGCAGTTCATTGGCTGCTATAAAT 366
Query 121 TCGTCCAACATTGGGTTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGCACTGGTCTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 TCGTCCAACATTGGGTTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGCACTGGTCTT 426
Query 181 GGAATCACTGAACAGGGTATATTGGTGCCTGTACAGGCAGAGCCAAAACATAACAAACGA 240
|||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 427 GGAATCGCTGAACAGGGTATATTGGTGCCTCTACAAGCAGAGCCAAAACATAACAAACGA 486
Query 241 GGACTGGGAGCTAAACAACCAGCTAAGAGAAAACCGGCACAGCCTCAGGCTAAGGATGAA 300
||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 487 GGAGTGGGAGCTAAACAACCAGCTAAGAGAAAAGTGGCTCAGCCTCAGGCTAAGGATGAA 546
Query 301 GAAGTCTCAAAGCAGAGCAAGAAACTTTCAAAGAAAATGCGGAAGATGATGGAGCACGAA 360
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 547 GAAGTCTCAAAGCAGAGTAAGAAACTTTCGAAGAAAATGCGGAAGATGATGGAGCACGAA 606
Query 361 AAACATTTACAGGAAAAAGAATTTGAACGAGCCTTCTGTAGGGAGTTCTGGCCCGATAAT 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 607 AAACATTTACAGGAAAAAGAATTTGAACGAGCCTTCTTTAGGGAGTTCTGGCCCGATAAT 666
Query 421 GTATAA 426
||||||
Sbjct 667 GTATAA 672
> AT3G52350.1 | Symbols: | D111/G-patch domain-containing protein
| chr3:19409606-19410148 REVERSE LENGTH=543
Length=543
Score = 401 bits (217), Expect = 2e-111
Identities = 321/370 (87%), Gaps = 11/370 (3%)
Strand=Plus/Plus
Query 64 GTGTCGAACGTTA-TGGGTGAGTCCTCTGGATCAAGCAGTTCATTGGCTGCTATAAATTC 122
||||| || |||| |||| || || |||| |||||||| | ||| | ||||||| | |||
Sbjct 178 GTGTCCAATGTTATTGGG-GATTCTTCTGAATCAAGCAATCCATCGACTGCTATCAGTTC 236
Query 123 GTCCAACATTGGGTTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGCACTGGTCTTGG 182
|| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 237 TTCTAACATTGGTTTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGAACTGGTCTAGG 296
Query 183 AATCACTGAACAGGGTATATTGGTGCCTGTACAGGCAGAGCCAAAACATAACAAACGAGG 242
|||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct 297 AATCACTGAACAAGGTATATTGGTGCCTCTACAAGCAGAACCAAAACATAACAAACAAGG 356
Query 243 ACTGGGAGCT-AAACAACCAGCTAAGAGAAAACCGGCACAGCCTCAGGCTA-AGGAT--G 298
||| |||||| ||| ||||||| ||||||||||||||||||||||||| || || | |
Sbjct 357 ACTAGGAGCTGAAA-AACCAGCCAAGAGAAAACCGGCACAGCCTCAGGATACAGCTTTTG 415
Query 299 AAGAAGTCTCAAAGCAGAGCAAGAAACTTTCAAAGAAAAT-GCGGAAGATGATGGAGCAC 357
||||||| |||||| |||||||||||||||| |||||| | | | |||||||| ||||||
Sbjct 416 AAGAAGTATCAAAGAAGAGCAAGAAACTTTCTAAGAAATTAGTG-AAGATGATCGAGCAC 474
Query 358 GAAAAAC-ATTTACAGGAAAAAGAATTTGAACGAGCCTTCTGTAGGGAGTTCTGGCCCGA 416
||||||| ||| | |||||| |||||||||||||||||| | |||||||||||||| ||
Sbjct 475 GAAAAACGATTGGC-GGAAAACGAATTTGAACGAGCCTTCCGCAGGGAGTTCTGGCCTGA 533
Query 417 TAATGTATAA 426
||||||||||
Sbjct 534 TAATGTATAA 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20207635098
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5