BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350126
Length=2325
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08600.2 | Symbols: | U3 ribonucleoprotein (Utp) family pro... 1984 0.0
AT4G02400.1 | Symbols: | U3 ribonucleoprotein (Utp) family pro... 1227 0.0
> AT5G08600.2 | Symbols: | U3 ribonucleoprotein (Utp) family protein
| chr5:2786187-2790241 FORWARD LENGTH=2821
Length=2821
Score = 1984 bits (1074), Expect = 0.0
Identities = 1279/1375 (93%), Gaps = 26/1375 (2%)
Strand=Plus/Plus
Query 289 GATGATGATGAAGATAGGCACACACGGATGTTGAAAGATGTCACTGGATTGCCAATTGCA 348
||||||||||| ||||||||| |||| ||||||||| ||||||||| |||||||||| ||
Sbjct 463 GATGATGATGATGATAGGCACTCACGAATGTTGAAAAATGTCACTGAATTGCCAATTTCA 522
Query 349 GCCTTTCAAGGAGAGAGTAAGAGCAAACGTGTAGTCTTCACTGAACCATATCCAGAGTCT 408
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 523 GCCTTTCAAGGAGAGAGTAAGAACAAACGTGTAGTCTTTACTGAACCATATCCAGAGTCT 582
Query 409 GAATTCAATCCTACCCGTGATGTTCTGGAGGGTAAATCCCTCACCACAATTGATGACCTT 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 583 GAATTCAATCCTACCCGTGATGTTCTGGAGGGTAAATCCCTCACCACAATTGATGACTTT 642
Query 469 ATGGAGCCTCTTCAAGGATTACCTGGATATAGCAAACTAAGCAATATGATCTTCCGGATG 528
|||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||
Sbjct 643 ATGGAGCCTCTTCAAGGATTACATGGAAATAGCCAACTAAGCAATATGATCTCCCGGATG 702
Query 529 CGAAAAGATACGCAGTCTCTTGTTCATGCTCCTCTGCCAAAGCAAGAACGAGAAAGACTG 588
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 703 CGAAAAGATACGCAGTCTCTTGTTCATGCTCCTCTGCCAAAGCCAGAACAAGAAAGACTG 762
Query 589 GAACGGAATGTAGTGAAAGAACTAGTTGACAAGGTGTTTAATAATTGGGTGCCTCTGGTA 648
|||||| |||||| ||| ||||| ||| |||||| |||| ||| ||||||||||||||||
Sbjct 763 GAACGGGATGTAGCGAATGAACTGGTTTACAAGGGGTTTGATATTTGGGTGCCTCTGGTA 822
Query 649 AAGAGGAATAGGGAGGCACCAACTGTTTACTTTAACCAAGATGTCAATGTTGGATACTCT 708
|| ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 823 AAAAGGAACAGAGAGGCACCAACTATTTACTTTAACCAAGATGTCAATGTTGGATACTCT 882
Query 709 ACCGTTGGTGCTATAGCATCACAATTTCAGCCCAGGACTGGATTTGAGATGAAAATGGCG 768
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 883 ACCGTTGGTGCTATAGCATCACAATTTCATCCCAGGACTGAATTTGAGATGAAAATGGCT 942
Query 769 TCTCTACTCGATGATAATGACATTTGGGAGGCTCACAAAGAAGATGGAGCTAGGCTTCTT 828
||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 943 TCTCTACTCGATGATCATGAGATTTTGGAGGCTCACAAAGAAGATGGAGCTAGGCTTCTT 1002
Query 829 GAATTCAACGAGGCAAGTTTTGTATCTATGGAAGATCACATCAAGAGACGTAACCATGTT 888
||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 1003 GAATTCAAC---G--AG----GTATCTATGGAAGATCACATCAAGAGACGTAACCATGTT 1053
Query 889 GCGAAGATGCGTAGCATGCTGTTCCGAGTTGACCTGAAA-AGTAAACGAATCAAGAAGAT 947
|| |||||||| |||||||| |||||||||||||||||| | ||||||||||||| ||||
Sbjct 1054 GCTAAGATGCGGAGCATGCTCTTCCGAGTTGACCTGAAACA-TAAACGAATCAAGCAGAT 1112
Query 948 TAAGTCTAAAACTTATCATCGCCTTAAAAACAAAGACCTGAATAAATCGGGAGTTGGAGC 1007
|||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1113 TAAGTCTAAAACATATCATCGCCTTAAAAACAAAGACCTGAATCAATCGGGTGTTGGAGC 1172
Query 1008 ATTCATGGACCCAGCAATGGCTAAAGAAGAGGCTAAGAAGCAGGAGGCTAGACGAGTTAA 1067
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1173 ATTCATGGAGCCAGCAATGGCTAAAGAAGAGGCTAAGAAGCAGGAGGCGAGGCGAGTAAA 1232
Query 1068 GGAACGTATGACTTTAAAGCACAAAAACACAGGACCATGGGCCAAACGCATGCTAAGGCT 1127
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1233 GGAACGTATGACTTTAAAGCACAAAAACACAGGACAATGGGCCAAACGCATGCTAAGCCG 1292
Query 1128 TGGACTGAATAGGAAATACGATG-GAACTCAGGCAGCTATATCTGAACAACTTCAGATTA 1186
||||||||||||||||||||||| | |||||||||||| ||||| |||||||||| |||
Sbjct 1293 TGGACTGAATAGGAAATACGATGTG-ACTCAGGCAGCTCTATCTAAACAACTTCAAATTC 1351
Query 1187 ATGCTACATTGTCCAGAAAGATGAACTCCACAAAAGATGAAAGTAGTAGTGACGAGGAAG 1246
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1352 ATGCTACTTTGTCCAGAAAGATGAACTCCACAAAAGATGAAAGTAGTAGTGATGAGGAAG 1411
Query 1247 ATTTGAATGATGGTTCAGATCAGGATACTTCTAAACTGATAGCGGAAGCAAAGGAGAAGA 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 ATTTGAATGATGGTTCAGATCAGGATACTTCTAAACTGATAGCGGAAGCAAAGGAGAAGA 1471
Query 1307 CACTGAAAACTTTGGAAGATGATGAAGTCCCCATTTCTGGTCTTATGTCATTACCTTTCA 1366
|||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1472 TACTGAAAACTGTGGACGATGATGAAGTCCCCATTTCTCGTCTTATGTCATTACCTTTCA 1531
Query 1367 TGGCTCGTGCTGTGAAAAAGAAAAACGAGGAAGCTAAAGAAGAAGATAAACGTGG-ACTT 1425
||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 1532 TGGCTCGTGCTGTGAAAAAGAAAAACGAGGAAGCTAAAGAAGAAGGTAAACGTGATA-TT 1590
Query 1426 GAGGAGTATAAAGAGTTGAAGAACTCTGGTGGAGCAGAAACCTCTAAAAAGTCCACTAAT 1485
||||||| | ||| || | | ||||||||||||||||||||||||||||||||||
Sbjct 1591 GAGGAGT-TG--GAG---AA-AT-T-TGGTGGAGCAGAAACCTCTAAAAAGTCCACTAAT 1641
Query 1486 GTTGGTGGTAGAAGAGTATTTGGGGCAGAAGCTCCAAAAGAGTCTAAAAAGGAATCAGAC 1545
|||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1642 GTTGTTGGTAGAAGAGTATTTGGTGCAGAAGCTCCAAAAGAGTCTGAAAAGGAATCAGAC 1701
Query 1546 AACTTTTTTGATAGCAGTGATAGTAGTGACAATGATATGGATGATAATGACTTAGAGGCT 1605
||| ||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1702 AACCTTTTTGATAACAGTGATAGTAGTGACAATGATATGGAAGATAATGAGTTAGAGGCT 1761
Query 1606 GTAAAAGATAATGCTTCACCTGCTAGAAAAACT-AAAGCCATTATGGAAACCGAG 1659
||||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||
Sbjct 1762 GTAAAAGATAATGCTTCACCTGCTAGAAACACTGAAA-CCATTATGGAAGCCGAG 1815
Score = 880 bits (476), Expect = 0.0
Identities = 572/616 (93%), Gaps = 16/616 (3%)
Strand=Plus/Plus
Query 1689 AGAAAGTGATTATGATTCAGAGAGTGAAGCAGAGCAAATGGTTGATGGGATTTTGACATG 1748
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2004 AGAAAGTG---ATGATTCAGAGAGTGAAGCAGAGCAAATGGTTGATGGGATTTTGACATG 2060
Query 1749 TTGTTCAAAGGAAACCTATGAAATTCCTTGTCAGGCAGAGCTTGTAAGCCGTGCTTTTGC 1808
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2061 CGGTTCAAAGGAAACGTATGAAATTCCTTGTCAAGCAGAGCTTGTAAGCCGTGCTTTTGC 2120
Query 1809 TGGTGATGACGTTGTAGGTGAATTTGACAAGGATAAGCAAGAGGTACTAAATCAGGAAGT 1868
|||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 2121 TGGTGATGACGTTGAAGGTGACTTTGAGAAGGATAAGCAAGAGGTACTAAATCAGGAAGT 2180
Query 1869 TCCTGAACCCGAAAAACCAGTTCAAGTTCCTGGTTGGGGACAATGGACCAATACCCAAAA 1928
|||||||||||| ||||| ||||||||| ||||||||||||| |||||||||| ||||||
Sbjct 2181 TCCTGAACCCGAGAAACCGGTTCAAGTTGCTGGTTGGGGACATTGGACCAATAACCAAAA 2240
Query 1929 CAAGAGAGGTTTACCATCAAGGATGGTTAGAGAACACGAAGATGCCAAGAAAACGAGAGA 1988
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 2241 CAAGAGAGGTTTACCATCAAGGATTGTTAGAGAACACGAAGAAGCCAAGAAAACGAGAGA 2300
Query 1989 GCAAGCTCTCaaaaaaaGGAAAGACGCTTCTCTCAGACATGTTATCCTATCAGAAAAAGT 2048
||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct 2301 GCAAGCTCTCAGAAAAAGGAAAGACGCTTCTTTCAAACATGTTATCATATCAGAAAAAGT 2360
Query 2049 CGATAAAAAGGCTGAGAAACTTCATACAACGAGTCTACCTTACCCTTACACATCAAAGGA 2108
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 2361 TGATAAAAAGGCTGAGAAACTTCAGACAAAGAGTCTACCTTACCCTTACACATCAAAGGA 2420
Query 2109 AGTTTTTGAACATAGTATGCGTATGCCTATTGGACCTGAGTTTAATCCCACAACTATTGT 2168
|||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2421 AGTTTTCGAACAAAGTATGCGTATGCCTATAGGACCTGAGTTTAATCCCACAACTATTGT 2480
Query 2169 TGGAGATCTAAACCGACCTGAGGTTGTGAAGAAAGCTGGAATGATCATTAAACCTGTCAA 2228
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2481 TGGAGTTCTAAACCGACCTGAGGTTGTGAAGAAAGCTGGAGTGATCATTAAACCTGTCAA 2540
Query 2229 GTTTGAGGAAGTAGATCCGAAGGAGAAAGTAGAGGACGAACACGCTCGTAGCCATCAGAA 2288
||||||||||||| ||||||| | || ||||||| ||||||||||||||||
Sbjct 2541 GTTTGAGGAAGTAAATCCGAA--------T-GA---CGAACACCCTCGTAGCCATCAGAA 2588
Query 2289 ACAAAAACCCAA-AAA 2303
|||||||||||| |||
Sbjct 2589 ACAAAAACCCAAGAAA 2604
Score = 353 bits (191), Expect = 4e-96
Identities = 249/276 (90%), Gaps = 7/276 (3%)
Strand=Plus/Plus
Query 4 GGAGGAGAGAAGAGGAAACCTAGTTTCAAAAACCTAGCTAATGCAAAGAAGAGGA-AA-- 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 118 GGAGGAGAGAAGAGGAAATCTAGTTTCAAAAACCTAGCTAATGCAAAGAAGAGGAGAACA 177
Query 61 GGACCTCACTTACCCAGCTCAATACTCAAGACCATTGCCAATGAGAAACGCCCTTTGAAC 120
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 178 GGACCTCACTTACCTAGCTCAATACTCAAGACCATTGCGAATGAGAAACGTCCTTTGAAC 237
Query 121 TCTGACGAAGGAGACGATGAGATCGATTCCGATTACGGTGATGATTTGTACGAGTACGAA 180
||||||||||||||||||||||| ||||| | |||||||||| ||| ||||||||||||
Sbjct 238 TCTGACGAAGGAGACGATGAGATTGATTCTGCTTACGGTGAT--TTT-TACGAGTACGAA 294
Query 181 GAAGGTGTGGCTGAAGAGGAATCCAGGAAAAACAAACGCTACGACCGCGTGGATAACTAT 240
||||||||| ||||||||||||| ||||||||||| |||||||| ||||| | ||||||
Sbjct 295 GAAGGTGTGCCTGAAGAGGAATCTAGGAAAAACAACCGCTACGAACGCGTCGTTAACTAC 354
Query 241 GAATTTGAGCTTCCCGAGGATTTTGAGGATGAAAAC 276
||||| |||||| | ||||||| |||| | |||||
Sbjct 355 GAATTCGAGCTTGCAGAGGATTGCGAGGTT-AAAAC 389
Score = 63.9 bits (34), Expect = 7e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 266 AGGATGAAAACGTGGAGTCAGAAGATGATGATGA 299
||||||||||||||||||||||||||||||||||
Sbjct 419 AGGATGAAAACGTGGAGTCAGAAGATGATGATGA 452
> AT4G02400.1 | Symbols: | U3 ribonucleoprotein (Utp) family protein
| chr4:1054199-1057998 FORWARD LENGTH=2726
Length=2726
Score = 1227 bits (664), Expect = 0.0
Identities = 1177/1415 (83%), Gaps = 74/1415 (5%)
Strand=Plus/Plus
Query 294 TGATGAAGATAGGCACACACGGATGTTGAAAGATGTCACTGGATTGCCAATTGCAGCCTT 353
|||||| ||||| ||||||||||||||| ||| | |||||||| |||||| ||| |||||
Sbjct 377 TGATGACGATAGACACACACGGATGTTGCAAGGTCTCACTGGAATGCCAAGTGCTGCCTT 436
Query 354 TCAAGGAGAGAGTAAG-AGCAAACGTGTAGTCT-TCACTGAACCATATCCAGAGTCTGAA 411
||||| |||||||||| || | || |||| ||| | |||||| | |||||||||||||||
Sbjct 437 TCAAGAAGAGAGTAAGAAG-AGACCTGTACTCTAT-ACTGAAGCGTATCCAGAGTCTGAA 494
Query 412 TTCAATCCTACCCGTGATGTTCTGGAGGGTAAATCCCTCACCACAATTGATGACCTTATG 471
||||||||||||||||||||||||||||||||| ||||| | || |||| |||||| ||
Sbjct 495 TTCAATCCTACCCGTGATGTTCTGGAGGGTAAAGGCCTCATCTCAGTTGAGGACCTTTTG 554
Query 472 GAGCCTCTTCAAGGATTACCTGGATATAGCAAACTAAGCAATATGATCTTCCGGATGC-G 530
| ||||||| ||||| |||||| | || | | |||| || | |||| |||||||| |
Sbjct 555 GCGCCTCTTGAAGGAAAACCTGGGTTTAACGATCTAAATAAGAGGATCAACCGGATGCAG 614
Query 531 AAAAGATACGCAGTCTCTTGTTCATGCTCCTCTGCCAAAGCAAGAACGAGAAAGACTGGA 590
||| ||||| |||||| |||||||||| ||| |||| |||| ||||||||||||||| ||
Sbjct 615 AAA-GATACTCAGTCTGTTGTTCATGCACCTTTGCCTAAGCCAGAACGAGAAAGACTAGA 673
Query 591 ACGGAATG-TAGTGAAAGAACTAGTTGACAAGGTGTTTAATAATTGGGTGCCTCTGGTAA 649
||||| | | ||||||| ||||||||| |||| |||||||| ||||||| |||||| |
Sbjct 674 GCGGAAAGCT-GTGAAAGGACTAGTTGAGAAGGACTTTAATAAGTGGGTGCATCTGGTCA 732
Query 650 AGAGGAATAGGGAGGCACCAACTGTTTACTTTAACCAAGATGTCAATGTTGGATACTCTA 709
|||||||||||||||||||||||||||||||||| ||| |||||||||||| || ||||
Sbjct 733 AGAGGAATAGGGAGGCACCAACTGTTTACTTTAATCAACCTGTCAATGTTGGGTATTCTA 792
Query 710 CCGTTGGTGCTATAGCATCACAATTTCAGCCCAGGACTGGATTTGAGATGAAAATGGCGT 769
| || ||||| ||||||||| | ||||| |||||||||| |||||||| ||||||||| |
Sbjct 793 CAGTCGGTGCAATAGCATCAGAGTTTCAACCCAGGACTGAATTTGAGAAGAAAATGGCTT 852
Query 770 CTCTACTCGATGATAATGA-CATTTGGGAGGCTCACAAAGAAGATGGAGCTAGGCTTCTT 828
|| ||||| | ||||| || | || |||||||||||||||||||||| |||| |||||||
Sbjct 853 CTGTACTCAAAGATAACGAGC-TTGGGGAGGCTCACAAAGAAGATGGCGCTAAGCTTCTT 911
Query 829 GAATTCAACGAGGCAAGTTTTGTATCTATGGAAGATCACATCAAGAGAC-GTAACCATGT 887
||||| || |||| | || | |||||||| ||||||||| || || |||| |
Sbjct 912 GAATTGAATGAGG----T---GT--CGATGGAAGACCACATCAAGT-ACCGTGACCACAT 961
Query 888 TGCGAAGATGCGTAGCATGCTGTTCCGAGTTGACCTGAAAAGTAAACGAATCAAGAAGAT 947
||| |||||||| ||| |||| ||||| ||| |||||||||||||| |||||||||||
Sbjct 962 TGCCAAGATGCGGAGCCTGCTATTCCGCCATGAACTGAAAAGTAAACGTATCAAGAAGAT 1021
Query 948 TAAGTCTAAAACTTATCATCGCCTTAAAAACAAAGACCTGAATAAATCGG-GAGTTGGAG 1006
|||||||||||||||||||||||||||| || |||||||| ||||| | || | ||||
Sbjct 1022 TAAGTCTAAAACTTATCATCGCCTTAAAGGGAAGGACCTGAAGAAATCAGCGA-TGGGAG 1080
Query 1007 CATTCATGGACCCAGCAATGGCTAAAGAAGAGGCTAAGAAGCAGGAGGCTAGACGAGTTA 1066
|||| |||||||||| |||||||||||||||||||| ||||||||| |||||||||| |
Sbjct 1081 CATTAATGGACCCAGAAATGGCTAAAGAAGAGGCTATTAAGCAGGAGACTAGACGAGT-A 1139
Query 1067 -AGGAACGTATGACTTTAAAGCACAAAAACACAGGACCATGGGCCAAACGCATGCTAAGG 1125
||||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||
Sbjct 1140 GAGGAACGGATGACTTTGAAGCACAAAAACACAGGAAAATGGGCCAAACGCATGTTAAGC 1199
Query 1126 CTTGGACTGAAT-AGGAAATACGATGGAACTCAGG-CAGCTATATCTGAACAACTTCAGA 1183
| |||||||| | || | ||| ||||||||| ||| ||||||||||||||||||||||||
Sbjct 1200 CGTGGACTGACTGAG-AGATATGATGGAACT-AGGGCAGCTATATCTGAACAACTTCAGA 1257
Query 1184 TTAATGCTACATTGTCCAGAAAGATGAACTCCACAAAAGATGAAAGTAGTAGTGACGAG- 1242
|||||||||| ||||||||||||||||||||||| || |||| |||||||||||| |||
Sbjct 1258 TTAATGCTACTTTGTCCAGAAAGATGAACTCCACGAACGATGGAAGTAGTAGTGATGAGA 1317
Query 1243 GA-A-GATTTG-AA---T-GA-T-G-G-TTCAGATCAGGATACT--T-CTAAACTGATAG 1288
| | ||| | || | || | | | |||||||||||||||| | ||||| ||||||
Sbjct 1318 GCGACGATGAGGAAGAGTTGAGTTGTGGTTCAGATCAGGATACTCCTTCTAAATTGATAG 1377
Query 1289 CGGAAGCAAAGGAGAAGACACTGAAAACTTTGGAAGATGATGAAGTCCCCATTTCTGGTC 1348
|| |||| | ||||||||||||||||||| ||||||||||||| || |||| ||||||||
Sbjct 1378 CGAAAGCCAGGGAGAAGACACTGAAAACTATGGAAGATGATGATGTACCCAATTCTGGTC 1437
Query 1349 TTATGTCATTACCTTTCATGGCTCGTGCTGTGAAAAAGAAAAACGAGGAAGCTAAAGAAG 1408
|| | |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||
Sbjct 1438 TTCTTTCATTACCTTTCATGGCTCGTGCTATGAAAAAGAAAAATGAGGAAGCTAATGAAG 1497
Query 1409 AAGATAAACGTGGACTTGAGGAGTATAAAGAGTTGAAGAACTCTGGTGGAGCAGA-AACC 1467
||| |||||||| | ||| |||||||||||| ||| |||| | |||||||| ||| || |
Sbjct 1498 AAGCTAAACGTGCATTTGGGGAGTATAAAGAATTGGAGAATTTTGGTGGAGAAGATAATC 1557
Query 1468 TCTAAAAAGTCCACTAATGTTGGTGGTAGAAGAGTATTTGGGGC-A--------G---AA 1515
||||||| ||| || ||||| ||||||||||||||||||| || | | ||
Sbjct 1558 -CTAAAAAATCCGCTGATGTTAGTGGTAGAAGAGTATTTGGTGCCACCTCTAAAGTCGAA 1616
Query 1516 GCTCCAAAAGAGTCTAAAAAGGAATCAGACAACTTTTT-TGATAGCAGTGATAGTAGTGA 1574
||||||||||||||||||||||| || ||||| ||||| ||| | |||||||||| | |
Sbjct 1617 GCTCCAAAAGAGTCTAAAAAGGACTCGGACAA-TTTTTATGACAACAGTGATAGT-G--A 1672
Query 1575 CAATGATATGGA---T---GA---TAATGAC-TTAGAGGCTGTAAAAGATAATGCTTCAC 1624
|||||||||||| | || ||||||| || | |||||| ||||| ||||||||
Sbjct 1673 CAATGATATGGAAGGTATAGAAAATAATGACCTTGG-GGCTGTTGGAGATACTGCTTCAC 1731
Query 1625 CTGCTAGAAAAACTAAAGCCATTATGGAAACCGAG 1659
|||||||||| ||| |||||| | || ||||||
Sbjct 1732 CTGCTAGAAACACTGGAGCCATAACAGAGACCGAG 1766
Score = 721 bits (390), Expect = 0.0
Identities = 563/646 (87%), Gaps = 13/646 (2%)
Strand=Plus/Plus
Query 1672 AAGGAGA-CGAAAGATGAAGAAAGTGATTATGATTCAGAGAGTGAAGCAGAGCAAATGGT 1730
||||| | ||| ||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 1923 AAGGA-ATCGAGAGATGAAGAAAGTGA--A-GATTCAGAGAGTGAAGCTGAGCAAATGGT 1978
Query 1731 TGATGGGATTTTGACATGTTG-TTCAAAGGAAACCTATGAAATTCCTTGTCAGGCAGAGC 1789
||||||||||||||||| || ||| ||||| ||||||||||| |||| ||| |||||||
Sbjct 1979 TGATGGGATTTTGACAT-CTGCTTCGAAGGAGACCTATGAAATCCCTTCTCAAGCAGAGC 2037
Query 1790 TTGTA-AGCCGTGCTTTTGCTGGTGATGACGTTGTAGGTGAATTTGACAAGGATAAGCAA 1848
|| || | |||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 2038 TTATACA-ACGTGCTTTTGCTGGTGATGACGTTGTAGAAGAATTTGAGAAGGATAAGCAA 2096
Query 1849 GAGGTACTAAATCAGGAAGTTCCTGAACCCGAAAAACCAGTTCAAGTTCCTGGTTGGGGA 1908
|| || ||||||||||||||||||||||| ||||| || |||| ||||||||||||||||
Sbjct 2097 GAAGTTCTAAATCAGGAAGTTCCTGAACCGGAAAAGCCGGTTCTAGTTCCTGGTTGGGGA 2156
Query 1909 CAATGGACCAATACCCAAAACAAGAGAGGTTTACCATCAAGGATGGTTAGAGAACACGAA 1968
|||||||||||| |||||| |||||||||||||| ||| |||||||||||||||| |||
Sbjct 2157 CAATGGACCAATGTCCAAAAGAAGAGAGGTTTACCTTCATGGATGGTTAGAGAACATGAA 2216
Query 1969 GATGCCAAGAAAACGAGAGAGCAAGCTCTCaaaaaaaGGAAAGACGCTTC-TCTCAGACA 2027
||||| || |||| |||| ||| || |||||||| |||||||||| | | ||||||| |
Sbjct 2217 GATGCAAATAAAAAGAGAAAGCTAGATCTCAAAACAAGGAAAGACTAT-CGTCTCAGAAA 2275
Query 2028 TGTTATCCTATCAGAAAAAGTCGATAAAAAGGCTGAGAAACTTCATACAACGAGTCTACC 2087
||||||| ||||||| |||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2276 TGTTATCATATCAGAGAAAGTCGATAAAAAGGCTGACAAACTTCATACAACGACTCTACC 2335
Query 2088 TTACCCTTACACATCAAAGGAAGTTTTTGAACATAGTATGCGTATGCCTATTGGACCTGA 2147
|| ||| || ||||| ||||||||||| ||||| || ||||| |||||||| ||||| ||
Sbjct 2336 TTTCCCATATACATCTAAGGAAGTTTTCGAACACAGCATGCGCATGCCTATAGGACCCGA 2395
Query 2148 GTTTAATCCCACAACTATTGTTGGAGATCTAAACCGACCTGAGGTTGTGAAGAAAGCTGG 2207
||||||||| | ||||||||||||| ||| |||||||| ||||||||||||||||||||
Sbjct 2396 GTTTAATCCTGCGACTATTGTTGGAGCTCTCAACCGACCCGAGGTTGTGAAGAAAGCTGG 2455
Query 2208 AATGATCATTAAACCTGTCAAGTTTGAGGAAGTAGA-TCCGAAGGAGAAAGTAGAGGACG 2266
|||| |||||||| ||||| ||||||||||| || ||| || ||||||| ||| ||||
Sbjct 2456 TGTGATAATTAAACCGGTCAAATTTGAGGAAGT-GAATCCAAACGAGAAAGCAGATGACG 2514
Query 2267 AACACGCTCGTAGCCATCAGAAACAAAAACCCAAAAAGGGTCGTAA 2312
|| || |||| |||||||| ||||||| ||||||||||||| ||||
Sbjct 2515 AAAACCCTCGAAGCCATCAAAAACAAAGACCCAAAAAGGGTAGTAA 2560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115411052955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5