BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350144
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09210.1 | Symbols: | GC-rich sequence DNA-binding factor-l... 1448 0.0
AT5G08550.1 | Symbols: ILP1 | GC-rich sequence DNA-binding fact... 1430 0.0
> AT5G09210.1 | Symbols: | GC-rich sequence DNA-binding factor-like
protein | chr5:2862610-2865359 REVERSE LENGTH=1812
Length=1812
Score = 1448 bits (784), Expect = 0.0
Identities = 932/1003 (93%), Gaps = 12/1003 (1%)
Strand=Plus/Plus
Query 614 AGGTTGATGGATATTCCCTGATAATAGAAGGAGACTCAAGCACC---GATGAGAGTGACA 670
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 758 AGGTTGATGGATATTCCCTGATAGTAGAAGGAGACTCAAGCACCGATGATGAGAGTGACT 817
Query 671 GTGAGACTTCAGCTTATAAGGAGACACGAGATCGCTTACTTCAGCGTGCCGATAAAATCC 730
||||||||||||||||| ||||| |||||||| ||||||||||||||||||| ||||||
Sbjct 818 GTGAGACTTCAGCTTATGAGGAGGCACGAGATAGCTTACTTCAGCGTGCCGACAAAATCT 877
Query 731 TTAGTGTTGCATCTGTGGTGTACTCCCAGCTTTCAAGGGTGAAGACGATATTTAAGAGGT 790
|||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| |||
Sbjct 878 TTAGTGATGCATCTGTGGTGTACTCCGAGCTTTCAAGGGTGAAGTCGATATTTAAAAGGG 937
Query 791 GTGCGCGAGACTATCCATCTGCTTGT-CGGAG-TGCTTACAAGTCTTTGACCGTTCCTTC 848
|||||||| || | || |||||| | ||| | |||||||| ||||||||||||||||||
Sbjct 938 GTGCGCGACACCCTTCACCTGCTT-TCCGG-GCTGCTTACACGTCTTTGACCGTTCCTTC 995
Query 849 CATCTATTCACCTTATGTAAGACTGGAGCTTTTGAGATGGGATCCTCTTCATCAACATGT 908
||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 996 CATGTATTCACCTTATCTAAGACTGGAGCTTTTGAGATGGGATCCTCTTCATCAGGATGT 1055
Query 909 GGATTTCTCTGACATGAACTGGCATGGACTGCTGTTTGATTATGA-GATTGGGAATGGTT 967
||||||||||||||||| |||||||||||||||||| ||| | | ||||| | |||||
Sbjct 1056 CGATTTCTCTGACATGAATTGGCATGGACTGCTGTTTCATTCT-AGGATTGTGTGTGGTT 1114
Query 968 TTGCACCAGTTTGTACTGATCCTAACTTTGTATCTGAGCTAGTGGAATACGTTGCGATTC 1027
| |||||||||||||| |||| ||||||||||||||||||||| |||| |||||| |||
Sbjct 1115 CTACACCAGTTTGTACTAATCCCAACTTTGTATCTGAGCTAGTGAAATATGTTGCGGTTC 1174
Query 1028 CCATTTTGCACCATCGGATAGTTCGTTGCTGGGATATACTTAGCACCCGGGAGACAAGAA 1087
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1175 CCATTTTGCACCATCGGATAGTTCGTTGCTGGGATATACTTAGCACCAGGGAGACGAGAA 1234
Query 1088 ATGCTGTTGCTGCTACAAGCTTGGTGGCAAGTTATGTTTATT-CTTCGAGTAAGGCCCTA 1146
||| ||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||
Sbjct 1235 ATGTTGTTGCTGCTACAAGCTTGGTGGCAAGATATGTTT-TTCCTTCGAGTGAGGCCCTA 1293
Query 1147 GCGAAACTATCTGTTGCTCTTCGTGCTCGCCTTGTTGAAGCCATTACAGCTATTAGTGTT 1206
||| |||| ||| ||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1294 GCGGAACTTTCTCTTGCTATTCATGCTCGCCTTGTTGAAGCCATTATAGCTATTAGTGTT 1353
Query 1207 CCGACATGGGATCCTCAGGTATCAAAGGCTGTACCTAATGCTCCACAAGTTGCAGCATAT 1266
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1354 CCAACATGGGATCCTCAGGTATCAAAGGATGTACCTAATGCTCCACAAGTTGCAGCATAT 1413
Query 1267 AGGTTTGGGACATCAGTCCGTCTTATGAGAAATATATGTATGTGGAAAGACATGATGGAG 1326
||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 1414 AGGTTTGGGACATCAGTCCGTCTTATGAGAAATATTTGTATGTGGAAAGACGTCATGGAG 1473
Query 1327 CTTCCGGTGTTGGAGAAGTTGGCTCTGAGTGACCTTTTGTTTGGAAAAGTTTTACCTCAT 1386
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 CTTCCGGTCTTGGAGAAGTTGGCTCTGAGTGACCTTTTGTTTGGAAAAGTTTTACCTCAT 1533
Query 1387 GTCAGAAGCATTGCATCAGAATCAAATATGCATGATGCTGTGACAAGAACTGAAATGATC 1446
||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||
Sbjct 1534 GTCAGAAGCATTGCATCAGAATCAAATATCCATGATGCTGTGACAAAAACTGAAAGGATC 1593
Query 1447 GTTGCTTCTTTGTCTGGAGTATGGACTGGACCAAGTGTCACAAGAACCCACAGTCGTCTG 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1594 GTTGCTTCTTTGTCTGGAGTATGGACTGGACCAAGTGTCACAAGAACCCACAGTCATCTG 1653
Query 1507 CTGCAACCCCTTGTGGATTGTACTCTGACACTTGGAAGAATACTCGAGAAAA-GGCTTGC 1565
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1654 CTGCAACCCCTTGTGGATTGTACTCTGACACTTGGAAGAATACTCGAGAAAAAGGTTTGC 1713
Query 1566 CTCGGGACTGGTCGATACGGAAACCACTGGTCTCGCCCCCAGG 1608
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1714 CTCGGGACTGGTCGATACGGAAACCACTGGTCTCGCCCGCAGG 1756
> AT5G08550.1 | Symbols: ILP1 | GC-rich sequence DNA-binding factor-like
protein | chr5:2765642-2770282 REVERSE LENGTH=3066
Length=3066
Score = 1430 bits (774), Expect = 0.0
Identities = 1047/1175 (89%), Gaps = 33/1175 (3%)
Strand=Plus/Plus
Query 533 AGCGCAGGGAAGTGGAACAGAGGGCTGCAGCCCCGCAGAAAAGGCGAGCTCGATTTGAAA 592
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1565 AGCGCAGGGAAGTGGAACAGAGGGCTGCAGCCCGGCAGAAAAGGCGAGCTCGATTTGAAA 1624
Query 593 ACAAGCGTGCATCAGCCGA-AGAGGTTGATGGATATTCCCTGATAATAGAAGGAGACTCA 651
| ||||||||||||| | | |||||||||||| ||| |||| |||||||||||| |||
Sbjct 1625 ATAAGCGTGCATCAG-CTATGGAGGTTGATGGACCTTCTCTGAAAATAGAAGGAGAATCA 1683
Query 652 AGCACCGATGAGAGTGACAGTGAGACTTCAGCTTATAAGGAGACACGAGATCGCTTACTT 711
||||| ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1684 AGCACTGATGAGAGTGACACTGAGACTTCAGCTTATAAGGAGACAAGAGATAGCTTACTT 1743
Query 712 CAGCGTGCCGATAAAATCCTTAGTGTTGCATCTGTGGTGTACTCCCAGCTTTCAAGGGTG 771
||| |||| ||||| || |||||| |||||||| || ||||||||||||||||| ||||
Sbjct 1744 CAGTGTGCTGATAAGGTCTTTAGTGATGCATCTGAGGAGTACTCCCAGCTTTCAAAGGTG 1803
Query 772 AAGACGATATTTAAGAGGTGTG-CGCGAGACTATCCATCTGCTTGTCG-GAGTGCTTACA 829
||| ||| |||| ||||||| | |||||||||| |||| ||| ||| || ||||||||
Sbjct 1804 AAGGCGAGATTTGAGAGGTG-GAAGCGAGACTATTCATCAACTTATCGTGA-TGCTTACA 1861
Query 830 AGTCTTTGACCGTTCCTTCCATCTATTCACCTTATGTAAGACTGGAGCTTTTGAGATGGG 889
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1862 TGTCTTTGACCGTTCCTTCCATCTTTTCACCTTATGTAAGACTGGAGCTTTTGAAATGGG 1921
Query 890 ATCCTCTTCATCAACATGTGGATTTCTCTGACATGAACTGGCATGGACTGCTGTTTGATT 949
|||||||||||||| |||||||||||| ||||||||| |||||||| |||| |||||||
Sbjct 1922 ATCCTCTTCATCAAGATGTGGATTTCTTTGACATGAAATGGCATGGGTTGCTTTTTGATT 1981
Query 950 -----ATG--AG-A-TTGGGAATGGTTTTGCACCAGTTTG-TACTGAT-CCTAACTTTGT 998
| | || | |||| ||| ||||||||||| || ||||||| || ||| ||||
Sbjct 1982 ACGGGAAGCCAGAAGATGGGGATGATTTTGCACCAG-ATGATACTGATGCC-AACCTTGT 2039
Query 999 ATCTGAGCTAGTGGAATACGTTGCGATTCCCATTTTGCACCATCGGATAGTTCGTTGCTG 1058
|||||||||| ||| | ||||| ||||| ||||||||||||| |||||||||||||||
Sbjct 2040 CCCTGAGCTAGTAGAAAAGGTTGCAATTCCAATTTTGCACCATCAGATAGTTCGTTGCTG 2099
Query 1059 GGATATACTTAGCACCCGGGAGACAAGAAATGCTGTTGCTGCTACAAGCTTGGTGGCAAG 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2100 GGATATACTTAGCACCCGGGAGACAAGAAATGCTGTTGCTGCTACAAGCTTGGTGACAAA 2159
Query 1119 TTATGTTTATTCTTCGAGTAAGGCCCTAGC-GAAACTATCTGTTGCTCTTCGTGCTCGCC 1177
|||||||| | |||||||| ||||| |||| ||| |||| || |||| ||||||||||||
Sbjct 2160 TTATGTTTCTGCTTCGAGTGAGGCCTTAGCAGAA-CTATTTGCTGCTATTCGTGCTCGCC 2218
Query 1178 TTGTTGAAGCCATTACAGCTATTAGTGTTCCGACATGGGATCCTCAGGTATCAAAGGCTG 1237
|||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2219 TTGTTGAAGCCATTGCAGCTATTAGTGTTCCGACATGGGATCCTCTGGTATTGAAGGCTG 2278
Query 1238 TACCTAATGCTCCACAAGTTGCAGCATATAGGTTTGGGACATCAGTCCGTCTTATGAGAA 1297
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2279 TACCTAATACTCCACAAGTTGCCGCATATAGGTTTGGGACATCAGTCCGTCTTATGAGAA 2338
Query 1298 ATATATGTATGTGGAAAGACATGATGGAGCTTCCGGTGTTGGAGAAGTTGGCTCTGAGTG 1357
|||||||||||||||||||||| ||| |||||| ||||||||||| |||||||| ||||
Sbjct 2339 ATATATGTATGTGGAAAGACATCCTGGCGCTTCCAGTGTTGGAGAACTTGGCTCTTAGTG 2398
Query 1358 ACCTTTTGTTTGGAAAAGTTTTACCTCATGTCAGAAGCATTGCATCAGAATCAAATATGC 1417
|||||||||||||||||||| |||| ||||||||||||||||||||| ||| | | |
Sbjct 2399 ACCTTTTGTTTGGAAAAGTTCTACCCCATGTCAGAAGCATTGCATCA-AAT-A--TC--C 2452
Query 1418 ATGATGCTGTGACAAGAACTGAAATGA-TCGTTGCTTCTTTGTCTGGAGTATGGACTGGA 1476
|||||||||||||||||||||||| || |||||||||||||||||||||| ||||| |||
Sbjct 2453 ATGATGCTGTGACAAGAACTGAAA-GAATCGTTGCTTCTTTGTCTGGAGTGTGGACAGGA 2511
Query 1477 CCAAGTGTCACAAGAACCCACAGTCGTCTGCTGCAACCCCTTGTGGATTGTACTCTGACA 1536
||||| |||||| ||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 2512 CCAAGCGTCACACGAACCCACAGTCGTCCGCTGCAACCTCTTGTGGATTGTACTCTGACA 2571
Query 1537 CTTGGAAGAATACTCGAGAAAAGGCTTGCCTCGGGACTGGTCGATACGGAAACCACTGGT 1596
||| ||||||| |||||||||||||||| ||| ||||||| |||| ||||||||||||||
Sbjct 2572 CTTAGAAGAATTCTCGAGAAAAGGCTTGGCTCAGGACTGGACGATGCGGAAACCACTGGT 2631
Query 1597 CTCGCCCCCAGGTTAAAGAAAATACTTGTCGAGCTCCATGAACATGGAC-ACGCC-GGGA 1654
||||||| ||| ||||||| |||||| ||||||||||||||||||| || ||||| ||||
Sbjct 2632 CTCGCCCGCAGATTAAAGAGAATACTAGTCGAGCTCCATGAACATG-ACCACGCCAGGGA 2690
Query 1655 AAATTGTCAGAGCATTCAATCTCAAGGAGGCAGTT 1689
|| |||||||| |||||||||| ||||||||||||
Sbjct 2691 AA-TTGTCAGAACATTCAATCTTAAGGAGGCAGTT 2724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83935311240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5