BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350148
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09230.7 | Symbols: SRT2 | sirtuin 2 | chr5:2871474-2873779 ... 1679 0.0
> AT5G09230.7 | Symbols: SRT2 | sirtuin 2 | chr5:2871474-2873779
FORWARD LENGTH=1382
Length=1382
Score = 1679 bits (909), Expect = 0.0
Identities = 1021/1074 (95%), Gaps = 12/1074 (1%)
Strand=Plus/Plus
Query 1 ATGTACCGGCCGCTGCAATCTGGGGGAAATTTAGTTATGTTGTTTAAAGGATGCAGACGG 60
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 152 ATGTACCGGCCGCTGCAGTCTGGGGGAAACTTGGTTATGTTGTTTAAAGGATGCAGACGG 211
Query 61 TTTGTGAGAACAACGTGTCGCGTTTCGATCCCTGGTGGTTCTTTGGGAAATGAATCAGAA 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 212 TTTGTGAGAACAACGTGTCGCGTTTCGATCCCTGGTGGTTCTTTGGGGAATGAATCAAAA 271
Query 121 GCACCTCCAAGGTTTCTGAGGGATAAAAAGATAGTTCCAGATGCTGATCCTCCCAATATG 180
||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||
Sbjct 272 GCACCTCCAAGGTTTCTGAGGGATAGAAAGATTGTTCCAGATGCTGATCCCCCCAATATG 331
Query 181 GAAGATATTAATAAGTTGTATCGACTTTTTGAGCAAAGTTCGAGACTCACCATCTTGACT 240
|||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 332 GAAGATATCCACAAGTTGTATCGACTTTTTGAGCAAAGCTCGAGACTCACCATCTTGACT 391
Query 241 GGAGCTGGGATTAGCACAGAATGTGGAATTCCGGATTATAGAAGTCCCAATGGAGCTTAC 300
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 392 GGAGCTGGGGTTAGCACAGAATGTGGAATTCCGGATTACAGAAGTCCCAATGGAGCATAC 451
Query 301 AGTTCTGGTTTCAAACCAATTACCCATCAGGAATTCACTCGATCGAGCCGAGCTCGTAGG 360
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 452 AGTTCTGGTTTCAAACCAATTACCCATCAGGAGTTTACTCGATCAAGCCGAGCTCGTAGG 511
Query 361 CGGTATTGGGCAAGGAGTTACGCTGGATGGAG-ACGGTTCACTGCAGCACAACCTGGACC 419
||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||
Sbjct 512 CGGTATTGGGCGAGGAGTTACGCTGGATGGAGGA-GGTTCACTGCAGCACAACCAGGACC 570
Query 420 AG-TGCATACTGCTTTAGCATCACTAGAAAAAGCTGGACGAATAAATTTTATGATCACAC 478
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 AGCT-CATACTGCTTTAGCATCACTAGAAAAAGCTGGACGAATAAATTTTATGATCACAC 629
Query 479 AGAACGTTGACAGGCTGCATCATCGTGCTGGGAGCGATCCACTTGAATTACATGGCACAG 538
| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 AAAATGTTGACAGGTTGCATCATCGTGCTGGGAGCGATCCACTTGAATTACATGGCACAG 689
Query 539 TATATACTGTTATGTGCTTAGATTGCGGCTTCTCTTTTCCCCGAGACTTGTTTCAGGATC 598
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 690 TATATACTGTTATGTGCTTAGAGTGCGGCTTCTCTTTTCCCCGAGACTTGTTTCAGGATC 749
Query 599 AGCTAAAAGCTATCAATCCTAAGGCCAGTTGGGCAGAAGCAATAGAAAGTATCGATCATG 658
|||||||||| |||||||||||| | |||| ||||| ||||||||||| |||||||
Sbjct 750 AGCTAAAAGCAATCAATCCTAAG-----T-GGGCTGAAGCTATAGAAAGTATTGATCATG 803
Query 659 GAGATCCAGGGTCAGAGAAGAGCTTTGGCATGAAACAAAGGCCTGATGGTGATATTGAGA 718
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 804 GAGATCCAGGATCAGAGAAGAGCTTTGGCATGAAACAAAGGCCTGATGGTGATATCGAGA 863
Query 719 TTGACGAAAAGTTTTGGGAAGAAGGTTTTCATATACCTGTATGTGAGAAGTGCAAAGGAG 778
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 864 TTGACGAAAAGTTTTGGGAAGAGGGTTTTCATATACCAGTATGTGAGAAGTGCAAAGGAG 923
Query 779 TCCTAAAGCCGGATGTAATTTTCTTTGGAGACAACATCCCGAAGGAAAGAGCTACTCAAG 838
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 TCCTAAAGCCTGATGTAATTTTCTTTGGAGACAACATCCCGAAGGAAAGAGCTACTCAAG 983
Query 839 CAATGGAAATTGCAAAACAGAGCGATGCATTTCTCGTGTTGGGTTCATCCTTAATGACAA 898
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 984 CAATGGAAGTTGCAAAACAGAGCGATGCATTCCTCGTGTTGGGTTCATCCTTAATGACAA 1043
Query 899 TGTCCGCTTTTCGCCTT-GTCAGAGCGGCTCATGAGGCTGGTGCTATGACTGCAATTGTA 957
|||| |||||||||||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct 1044 TGTCTGCTTTTCGCCTTTG-CAGAGCGGCTCATGAGGCTGGTGCTATGACCGCAATTGTA 1102
Query 958 AATATAGGCGAAACAAGAGCTGATGACCTTGTTCCATTGAAAATCAATGCTAGAGTTGGT 1017
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1103 AATATAGGCGAAACAAGAGCTGATGACATTGTTCCATTGAAAATCAATGCTAGGGTTGGT 1162
Query 1018 GAGATATTGCACAGAGTTCTTGACGTGGGGTCGCTCAGTGTCCCAGCTCACTAG 1071
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1163 GAGATATTGCACAGAGTTCTTGACGTGGGATCGCTCAGTGTCCCAGCTCTCTAG 1216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5