BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350155
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09300.1 | Symbols: | Thiamin diphosphate-binding fold (THD... 2194 0.0
> AT5G09300.1 | Symbols: | Thiamin diphosphate-binding fold (THDP-binding)
superfamily protein | chr5:2884179-2886863 REVERSE
LENGTH=1588
Length=1588
Score = 2194 bits (1188), Expect = 0.0
Identities = 1344/1421 (95%), Gaps = 4/1421 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCTGCATTTGAGATCTTCTCCTTCATTGAAATCGACTTTCCTCAACATTCTCAGA 60
|||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||
Sbjct 67 ATGGCTCTGCATTTGAGATCTTCTTTTTCATCAAAATCGACTTTACTCAATATTCTCAGA 126
Query 61 CAAAACCTGGGTTTCGGTTCTAGGAGCCACGTGACTCGGCATATCCGCCAAAAT-CTACC 119
|| ||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 127 CACAACCTCGGTTTCGGTTCTAGGAGCCACGTGACTCGGCATATCCGCC-AAATCCTACC 185
Query 120 ACATGATCCTCCGCTTCGAGGTTCACAGAATCCAATTCGTCGGT-TCTGTAACACCGTGG 178
|||||| || ||||||||||||||||||||||||||| | | || ||||||| ||| |||
Sbjct 186 ACATGACCCCCCGCTTCGAGGTTCACAGAATCCAATTAG-CCGTCTCTGTAATACCATGG 244
Query 179 CAGAGCCAGAAACACTCTCGAGTTTTGGTCAGCACGAAGACGCCAGCAATCATCAGGTCA 238
| |||||||| |||||||| ||||||| |||||||||| |||||| |||||||||||| |
Sbjct 245 CGGAGCCAGAGACACTCTCTAGTTTTGTTCAGCACGAATACGCCAACAATCATCAGGTAA 304
Query 239 TGGATTTTCCAGGAGGAAAGGTAGCTTTCACACCTGAGATTCGATTCATATCAGAATCCG 298
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 305 TGGACTTTCCAGGAGGAAAGGTAGCTTTCACACCTGAGATTCAATTCATATCAGAATCTG 364
Query 299 ATTCAGACCGTGTTCCTTGCTACCGTGTTCTTGATGACAATGGCCAACTTATCACCAACA 358
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 ATAAAGAGCGTGTTCCTTGCTACCGTGTTCTTGATGACAATGGCCAACTTATCACCAACA 424
Query 359 GCCAGTTTGTTCAGGTTAGCGAAGAAGTTGCCGTAAAGATATACAGCGATATGGTTACTC 418
|||||||||||||||||||||| || ||||| || |||||||| ||||||||||||||||
Sbjct 425 GCCAGTTTGTTCAGGTTAGCGAGGAGGTTGCGGTGAAGATATATAGCGATATGGTTACTC 484
Query 419 TTCAAATAATGGATAACATATTCTACGAAGCTCAGAGACAAGGCAGACTTTCCTTTTACG 478
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 485 TTCAAATTATGGATAACATATTCTACGAAGCTCAAAGACAAGGCAGACTTTCCTTTTACG 544
Query 479 CTACTGCAATCGGTGAAGAGGCCATTAATATTGCATCAGCTGCTGCTCTCACCCCTCAAG 538
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 545 CTACTGCAATCGGTGAAGAGGCCATTAATATTGCATCAGCTGCTGCTCTCACTCCTCAAG 604
Query 539 ATGTTATCTTTCCTCAGTACAGAGAGCCTGGTGTTCTGTTATGGCGTGGTTTCACTCTTC 598
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 605 ATGTTATCTTTCCTCAGTACAGAGAGCCTGGTGTTCTACTATGGCGTGGTTTCACGCTTC 664
Query 599 AAGAATTTGCAAACCAGTGTTTTGGGAACAAATCTGATTATGGAAAAGGCAGGCAGATGC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 AAGAATTTGCAAACCAGTGTTTTGGGAACAAATCTGATTATGGAAAAGGCAGGCAGATGC 724
Query 659 CAGTCCACTATGGCTCTAACAAGCTCAATTATTTTACCGTTTCTGCAACAATTGCTACGC 718
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 725 CCGTCCACTATGGCTCTAACAAGCTCAATTATTTTACCGTTTCTGCAACCATTGCTACGC 784
Query 719 AGTTACCAAATGCGGTTGGTGCTGCTTATTCCTTAAAGATGGACAGGAAGGATGCATGTG 778
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 785 AGTTACCAAACGCGGTTGGTGCTGCTTATTCCTTAAAGATGGACAAGAAGGATGCATGTG 844
Query 779 CAGTCACATATTTTGGCGATGGTGGCACGAGTGAGGGAGATTTCCATGCTGCTTTGAATT 838
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 CGGTCACATATTTTGGCGATGGTGGCACGAGTGAGGGAGATTTCCATGCTGCTTTGAATA 904
Query 839 TTGCAGCAGTTATGGAAGCTCCTGTTATATTTATTTGCCGGAACAATGGATGGGCAATCA 898
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 905 TTGCAGCAGTTATGGAAGCTCCTGTTTTATTTATTTGCCGGAACAATGGATGGGCCATCA 964
Query 899 GTACTCCCACCTCAGATCAGTTCCGAAGTGATGGTGTAGTGGTCAAAGGCCGGGCCTATG 958
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 965 GTACTCCCACCTCAGATCAGTTCCGAAGTGATGGTGTAGTGGTCAAAGGCCGTGCTTATG 1024
Query 959 GCATTCGAAGTATACGTGTGGATGGAAATGATGCACTTGCTATGTACAGTGCGGTGCATA 1018
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1025 GAATTCGAAGTATACGTGTGGATGGAAATGATGCACTTGCCATGTACAGTGCGGTACATA 1084
Query 1019 CTGCTCGCGGAATGGCAATTAGCGAACAGAGGCCAATCTTGATTGAGGCCTTAACATACC 1078
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1085 CTGCTCGCGAAATGGCAATTAGAGAACAGAGGCCAATCTTGATTGAGGCCTTAACATACC 1144
Query 1079 GCGTAGGACACCATTCAACATCAGATGATTCCACAAGGTACCGCTCTTCTGATGAGATAG 1138
| |||||||||||||||||||||||||||||||| |||||||||||| | | ||||||||
Sbjct 1145 GTGTAGGACACCATTCAACATCAGATGATTCCACTAGGTACCGCTCTGCAGGTGAGATAG 1204
Query 1139 AGTGGTGGAACAAAGCAAGAAACCCGTTGTCTAGGTTTAGGACATGGATTGAAAGTAATG 1198
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1205 AGTGGTGGAACAAAGCAAGAAACCCACTGTCTAGGTTTAGGACATGGATTGAAAGTAATG 1264
Query 1199 GCTGGTGGAGTGATGAAGCAGAATCGGATCTGAGAAGCAGAATCAAGAAAGAGATGTTAG 1258
|||||||||||||| || | |||||||||||||||||||||||||| |||||||||||||
Sbjct 1265 GCTGGTGGAGTGATAAAACGGAATCGGATCTGAGAAGCAGAATCAAAAAAGAGATGTTAG 1324
Query 1259 AAGCGCTCCGGGTTGCAGAGAAGACTGAGAAACCGAATCTGAAGAACATGTTCTCAGATG 1318
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1325 AAGCGCTCCGGGTTGCAGAGAAGACTGAGAAACCGAATCTGCAGAACATGTTCTCAGATG 1384
Query 1319 TCTACGATGTTCCTCCTTCTAACCTGATGGAACAAGAACTTCTGGTGAGGCAGACGGTCA 1378
|||||||||||||||| |||||||| | |||||||||||||||||||||||||||| |||
Sbjct 1385 TCTACGATGTTCCTCCATCTAACCTCAGGGAACAAGAACTTCTGGTGAGGCAGACGATCA 1444
Query 1379 ATAGTCACCCCCAAGACTACCCAACAGATGTTCCTCTTTAG 1419
|||||||||| ||||| |||||| ||||||| |||||||||
Sbjct 1445 ATAGTCACCCACAAGATTACCCATCAGATGTGCCTCTTTAG 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69929359185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5