BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350216
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10090.1 | Symbols: TPR13 | Tetratricopeptide repeat (TPR)-l... 2806 0.0
> AT5G10090.1 | Symbols: TPR13 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:3153722-3155745 REVERSE LENGTH=1785
Length=1785
Score = 2806 bits (1519), Expect = 0.0
Identities = 1697/1785 (95%), Gaps = 3/1785 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGATAATCCGGTGGAGAAAAAGTCGCGTTGTCGGTTTTTGGGATTTGTGTTTAAT 60
||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGCAGATAATCCAGTGGAGAAAAAGTCGCGTTGTCGGTTTTTGGGGTTTGTGTTTAAC 60
Query 61 AGACGTGGCTTGTGGTCCAAGAAATGTCCCGCAGACAATAGTAGCCATAAAAGCACAATG 120
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 61 AGACGTGGCTTGTGGTCCAAGAAATGTCCCGCGGACAATGGTAGCCATAAAAGCACAATG 120
Query 121 AGTAGCAGCAATGCTTCCACCGCCACCGCTACCACCGCTAACATTCAGTTCACCAAATCT 180
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTAGCAGCAATGCCTCCACCGCAACCGCTACCACCGCTAACATTCAGTTCACCAAATCT 180
Query 181 CCATGTACTGAATTTAACCCGAGGAAGCTTCAAGAAAATAAAGTTTTACCTGAGCCGGTA 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 CCATGTACCGAATTTAACCCGAGGAAGCTTCAAGAAAATAAAGTTTTACCTGAGCCGATC 240
Query 241 GAGATCCAGAACCAGGTACAGAGACCTATTTCAAAACCCTCATCGCATCAATACCCAAAT 300
||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 241 GAGGTCCAGAACCAGGTACAAAGACCTGTTTCAAAACCCTCATCGCATCAATACCCAAAT 300
Query 301 AACCATCAATTAGGCAGTAATGGGAATAACCAACCAAG---TAGTAATCAAGGACCAGTC 357
||| |||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 301 AACAATCAGTTAGGCAGTAATGGGAATAACCAACCAAGTAATAATAATCAAGGACCAGTC 360
Query 358 CAACAACAACAAGCGAGGAAGGTTCCAAGGGAAGCAATTGGTTTATCAGGTGAGCTAGAG 417
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 CAACAACAACAAGCGAGGAAGGTTCCGAGGGAAGCAATTGGTTTATCAGGTGAGCTAGAG 420
Query 418 AGCATGATCATGGATAATCAGAAAGCAAAAGGGAATAATTGCTCTATGGTTCGAGCTTCT 477
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 AGCATGATCATCGATAATCAGAAAGCAAAAGGGAATAATGGCTCTATGGTTCGAGCTTCT 480
Query 478 TCAAGCAATGTGATGTTGTTTGGCAATCTTGGGAACTTGAAGCAGCCCGGAGCATCAGGT 537
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 481 TCAAGCAATGTGATGTTGTTTGGCAATCTTGGGAACTTGAAGCAGCCTGGACCATCGGGT 540
Query 538 GGGAATCAAACTACTATCCAGAACAATGGATACGGGAATACCGGTGGAGGGTATGGAGTG 597
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 541 GGGAATCAAACTACTATCCAGAACAATGGATACGGGAACACTGGTGGAGGGTATGGAGTG 600
Query 598 AAGAAGACGATGGAAGAGGAAAGAAAAACATCGGTTACACCAATACCGGCTTCAAATAAT 657
||||||||| | || ||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 601 AAGAAGACGTTAGAGGAGGAAAGAAAAACATCGGTTGCACAAATACCGGCTTCAAATAAC 660
Query 658 CAAGATCAGTCAGGATCTTTGTGTAGGGCGATTTCCACACGAATGGACCCCGAAACGTTA 717
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 661 CAAGACCAGTCAGGATCTTTGTGTAGAGCGATTTCCACACGAATGGATCCCGAAACGTTA 720
Query 718 AAGATAATGGGTAATGAAGATTATAAGAACGGGAATTTCGCAGAGGCGTTAGCCTTGTAT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAGATAATGGGTAATGAAGATTATAAGAACGGGAATTTCGCAGAGGCGTTAGCCTTGTAT 780
Query 778 GAAGCCGCAATATCCATCGATCCAAAAAAGGCTTCTTATCGAAGCAACAAGAGCGCAGCT 837
||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 781 GAAGCTGCAATATCCATCGATCCAAAAAAGGCTTCTTATCGTAGCAACAAAAGCGCGGCT 840
Query 838 TTAACGGCATTGGGGAGAATTCTCGAGGCAGTATTTGAGTGTAGAGAAGCAATCAGAATC 897
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 841 TTAACGGCATTGGGGAGAATTCTGGAGGCGGTATTTGAGTGTAGAGAAGCAATCAGAATC 900
Query 898 GATCCTCATTACCATAGAGCACACCATCGGTTGGCTAACTTGTACCTCAGGTTAGGAGAG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GATCCTCATTACCATAGAGCACACCATCGGTTGGCTAACTTGTACCTCAGGTTAGGAGAG 960
Query 958 GTGGAGAAGTCAATATATCATTTCAAGCATGCAGGTCCAGAAGCTGACCAAGAAGACATT 1017
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 961 GTGGAGAATTCAATATATCATTTCAAGCATGCGGGTCCAGAAGCTGACCAAGAAGACATT 1020
Query 1018 TCAAAAGCTAAAATGGTTCAAACACATCTCAACAAATGTACCGAGGCCAAAAGATTGCGA 1077
||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||| |||
Sbjct 1021 TCAAAGGCTAAAATGGTTCAAACACATCTCAACAAATGTACAGAGGCTAAGAGATTACGA 1080
Query 1078 GATTGGAACACTTTGATCAAAGAAACAGAAAACACCATAACTACAGGCGCTGATGCAGCT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GATTGGAACACTTTGATCAAAGAAACAGAAAACACCATAACTACAGGCGCTGATGCAGCT 1140
Query 1138 CCTCAAGTATATGCATTGCAAGCAGAGGCCTTTTTGAAGACATACAGACATCAAGAGGCC 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CCTCAAGTATATGCATTGCAAGCAGAGGCCTTTTTGAAGACATACAGACATCAAGAGGCC 1200
Query 1198 GACGATGCTTTGTCGAGATGCCCGGTTTTCGATGGGGAAATGAGCACAAAATACTACGGA 1257
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1201 GACGATGCTTTGTCTAGATGCCCGGTTTTCGATGGGGAAATGAGCACAAAGTATTACGGA 1260
Query 1258 CCCATCGGTTACGCCGGTTTCTTGGTCATCTGGGCTCAGGTTCACATGGCTTCCGGCAGG 1317
| ||||||||||| |||||||||||| | |||||||| ||||||||||| ||||||||
Sbjct 1261 TCGATCGGTTACGCTGGTTTCTTGGTCGTTTGGGCTCAAGTTCACATGGCATCCGGCAGA 1320
Query 1318 TTTGTAGAGGCAGTTGAGGCGATTCAACGAGCGGGCAAGCTGGACGGTAACAACAGGGAA 1377
|| |||||||| |||||||| ||||||||||| |||||| |||| |||||||||||||||
Sbjct 1321 TTCGTAGAGGCTGTTGAGGCTATTCAACGAGCTGGCAAGTTGGATGGTAACAACAGGGAA 1380
Query 1378 GTGAGTATGGTTCTCAGGCGTGCGCAGGCGGTTACAGCAGCGCGATCACGAGGGAACGAG 1437
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1381 GTGAGTATGGTTCTCCGGCGTGCGCAGGCGGTTACAGCAGCGCGATCACGAGGAAACGAT 1440
Query 1438 TTCTTTAAAGCCAGACGATTTCAAGAAGCTTGTGCAGCTTATGGTGAAGGCTTAGACCAC 1497
|||||||||||| |||||||||||||||||||| | |||||||| ||||| |||||||||
Sbjct 1441 TTCTTTAAAGCCGGACGATTTCAAGAAGCTTGTACGGCTTATGGCGAAGGGTTAGACCAC 1500
Query 1498 GACTCAAGAAACTCAGTCTTGCTATGTAACCGAGCGGCTTGCCTATCCAAAATAGGCCAG 1557
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1501 GACTCAAGAAACTCAGTCTTGCTATGTAACAGAGCGGCTTGCCTATCCAAAATGGGCCAG 1560
Query 1558 TTCGATAGAGCCGTTGAGGATACCTCCGCGGCACTTGCAGTCCGTCCTAGCTACACCAAG 1617
||||||||||||||||||||||| || |||||||| || ||||||||| |||||||||||
Sbjct 1561 TTCGATAGAGCCGTTGAGGATACATCAGCGGCACTAGCCGTCCGTCCTGGCTACACCAAG 1620
Query 1618 GCTCGACTCAGAAGAGCCGATTGTAACGCTAAGCTTGGGAATTGGGAATCGGCGATTGGA 1677
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1621 GCTCGACTCAGAAGAGCCGATTGTAACGCTAAGCTTGGGAATTGGGAATCGGCGGTTGGA 1680
Query 1678 GATTACGAGATATTGAAAAAAGAGACACCGGAAGATGAGGAAGTGACCAGAGGATTGTCG 1737
|||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1681 GATTACGAGATATTGAGAAAAGAGACACCGGAAGATGAGGAAGTGATAAAAGGATTGTCG 1740
Query 1738 GAGGCTCAGAAGCAGCTCGTGAAACGCCGTGGCCATGACTCTTGA 1782
||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1741 GAGGCACAGAAGCAGCTCGTGAAACGCCGTGGCCATGACTCTTGA 1785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88152157020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5